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Homology
BLAST of mRNA_E-fasciculatus_F_contig11688.1331.1 vs. uniprot
Match: D8LI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI60_ECTSI) HSP 1 Score: 523 bits (1347), Expect = 1.430e-172 Identity = 300/352 (85.23%), Postives = 310/352 (88.07%), Query Frame = 1
Query: 1 MPMLEAVAETEEPLGSDDAGEPPSPYGMSPGLAGGAPRATPDYARKTWKAYHERQALLAGRRQLSRSVEVDPVVWGDLIGRKLGELIEGERNHPRCVVRGGAADRDGGHCLLPELDDIRLHSGHEQAVAAAVGKPKLLRFSAEGSEYTADDFGAGGGFDEMYERRYAGFSALIKQAGGLAAKRARLRAGYPDDHVESHRERRSREKTSREAEAIPWDLGAARAAARPTVAAAPGGGDGDGXXXVSXXXXXXXXXXXXXXXXXXXXXAICGSGFGDDLFAGDAAAVLQQSAEQQENEHDGQLPDADLDAHPNPHIGPDSHRLLPDEVEAALRGHAEESADGFDASFAAQMQHR 1056
MPML AVAET+E +GSDDAG PPSPYG SPGLAG APRATPDYARKTWKAYHERQALLAGRRQ SR VEVDPVVWGDLIG+KL ELIEGERNHPR VVRGGAADRDGGHCLLPELDDI LHSGHEQAVAAAVGKPK LRFSAEGSEYTADDFGAGGGFDEMY+RRYAGFS LIKQAGGLAAKRAR RAGYPDD VES+RERRSREKTSREAEAIPWDLGAARAAA XXX XXXXXXXXXXXXXX XXXXX FGDDLFAGDAAAVLQQSAEQQEN++DGQ PDADL+AHP PHIGPD+HRLLPDEVEA LRGHAEESADG+DASFAAQMQHR
Sbjct: 1 MPMLAAVAETDEAVGSDDAGWPPSPYGASPGLAG-APRATPDYARKTWKAYHERQALLAGRRQYSRPVEVDPVVWGDLIGKKLAELIEGERNHPRSVVRGGAADRDGGHCLLPELDDIHLHSGHEQAVAAAVGKPKFLRFSAEGSEYTADDFGAGGGFDEMYQRRYAGFSPLIKQAGGLAAKRARSRAGYPDDQVESYRERRSREKTSREAEAIPWDLGAARAAAXXXXX------XXXXXXXXXXXXXXXXXXXXXXXWSXXXXXXXXXXXFGDDLFAGDAAAVLQQSAEQQENKNDGQRPDADLEAHPIPHIGPDAHRLLPDEVEAVLRGHAEESADGYDASFAAQMQHR 345
BLAST of mRNA_E-fasciculatus_F_contig11688.1331.1 vs. uniprot
Match: A0A6H5JK81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK81_9PHAE) HSP 1 Score: 508 bits (1308), Expect = 1.460e-164 Identity = 298/351 (84.90%), Postives = 307/351 (87.46%), Query Frame = 1
Query: 4 PMLEAVAETEEPLGSDDAGEPPSPYGMSPGLAGGAPRATPDYARKTWKAYHERQALLAGRRQLSRSVEVDPVVWGDLIGRKLGELIEGERNHPRCVVRGGAADRDGGHCLLPELDDIRLHSGHEQAVAAAVGKPKLLRFSAEGSEYTADDFGAGGGFDEMYERRYAGFSALIKQAGGLAAKRARLRAGYPDDHVESHRERRSREKTSREAEAIPWDLGAARAAARPTVAAAPGGGDGDGXXXVSXXXXXXXXXXXXXXXXXXXXXAICGSGFGDDLFAGDAAAVLQQSAEQQENEHDGQLPDADLDAHPNPHIGPDSHRLLPDEVEAALRGHAEESADGFDASFAAQMQHR 1056
PML AVAET+E +GSDDAG PPSPYG+S GLAG APRATPDYARKTWKAYHERQALLAGRRQ SR VEVDPVVWGDLIGRKL ELIEGERNHPR VVRGGAADRDGGHCLLPELDDIRLHSGHEQAVAAAV KPK LRFSAEGSEYTADDFGAGGGFDEMY+R FSALIKQ GGLAAKRAR RAGYPDD VESHRE RS EKTSREAEAIPW+LGAARAAA XXX XXXXXXXXXXXXXXXXXXXXX I GS FGDDLFAGDAAAVLQ+SAEQQEN++DGQLPDADL AHP PHIGPDSHRLLPDEVEA LRGHAEES DG+DASFAAQMQHR
Sbjct: 263 PMLAAVAETDEAVGSDDAGRPPSPYGISLGLAG-APRATPDYARKTWKAYHERQALLAGRRQYSRPVEVDPVVWGDLIGRKLAELIEGERNHPRSVVRGGAADRDGGHCLLPELDDIRLHSGHEQAVAAAVCKPKFLRFSAEGSEYTADDFGAGGGFDEMYQR----FSALIKQVGGLAAKRARTRAGYPDDQVESHRESRSSEKTSREAEAIPWELGAARAAAP--------------XXXXXXXXXXXXXXXXXXXXXXXXXXTIGGSEFGDDLFAGDAAAVLQRSAEQQENKNDGQLPDADLKAHPIPHIGPDSHRLLPDEVEAVLRGHAEESVDGYDASFAAQMQHR 594
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 528.9 |
| Seed ortholog evalue | 1.9e-147 |
| Seed eggNOG ortholog | 2880.D8LI60 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1059 |
| Cds size | 1059 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11688.1331.1 >prot_E-fasciculatus_F_contig11688.1331.1 ID=prot_E-fasciculatus_F_contig11688.1331.1|Name=mRNA_E-fasciculatus_F_contig11688.1331.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=353bp
MPMLEAVAETEEPLGSDDAGEPPSPYGMSPGLAGGAPRATPDYARKTWKA YHERQALLAGRRQLSRSVEVDPVVWGDLIGRKLGELIEGERNHPRCVVRG GAADRDGGHCLLPELDDIRLHSGHEQAVAAAVGKPKLLRFSAEGSEYTAD DFGAGGGFDEMYERRYAGFSALIKQAGGLAAKRARLRAGYPDDHVESHRE RRSREKTSREAEAIPWDLGAARAAARPTVAAAPGGGDGDGGGGVSDGGGG DGDGGGGGGRSGGPGGAICGSGFGDDLFAGDAAAVLQQSAEQQENEHDGQ LPDADLDAHPNPHIGPDSHRLLPDEVEAALRGHAEESADGFDASFAAQMQ HR* back to topmRNA from alignment at E-fasciculatus_F_contig11688:503..4267+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig11688.1331.1 ID=mRNA_E-fasciculatus_F_contig11688.1331.1|Name=mRNA_E-fasciculatus_F_contig11688.1331.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3765bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11688:503..4267+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGCCAATGCTGGAGGCGGTTGCCGAGACCGAGGAGCCCCTCGGCTCGGA
CGACGCAGGCGAGCCTCCTTCGCCGTACGGGATGTCGCCGGGGCTGGCCG
GCGGCGCCCCGCGAGCCACCCCGGACTACGCCCGAAAGACCTGGAAGGCT
TATCACGAGCGGCAGGCGCTGTTGGCGGGACGGCGGCAGCTCTCGAGGTC
CGTGGAGGTGGATCCCGTCGTGTGGGGGGACCTGATAGGGAGGAAACTCG
GCGAGCTGATCGAGGGGGAGAGGAACCACCCGCGCTGCGTGGTCCGGGGC
GGGGCGGCGGATAGGGACGGGGGGCACTGCCTGCTGCCAGGTGTGCCGGA
TGTGTCTGTGCTTTGAGAGGTGGCGGCGTAGCTGATCGTTGCCGCCCCGA
CTTGCACTGAGGTCCTGCACAAACAGATGGATCCAACTAATACTTTTGTT
GCGCGTGTGTTGTACGCTGAATTTGTTTGGGTTCAGCTATGTGCACCCGA
AGGATTGTTGGCCATGCCTTTTGTCCAGCGTAGGTTCGGTTGACCCTCCA
GGACACTATCGCCGCTGGGGGGTGCCGACTTTGTGAAATGCCAGTTCGGT
GCGCGGCGTCTTTGCACGCGAAACAGCGAAGTGCACCATTTTTCGTTGTG
GCCGCGGCCATTGTTGTAGTAGTTGTTTTTGCCGTTCGTTGTGTCCGGCT
GTTCGGATTTCGCCGTTCCTGCCTGACGGGCGCGTGTTGAGAAGCACCTG
GCCGTTTCTGTTTCGCCTTCTCGTGAACTTTACAGCTTAGCAGAGCAGTC
CGTTCGCGGTAAAACCATGCAAAAATGCGTGATGTCTCCGTGCACGTTCG
GTGTGGATAGCCGCGTATTCGAAAGCGGAAGCTCACCACAGCCGACGGTT
GTATCTCATGTCCGAGTGCAACTTCCCCCCCACCCGAACTTGCATATTGG
CTTTCAGAGCTGGATGACATTCGCTTGCACAGCGGGCATGAGCAAGCCGT
GGCGGCGGCGGTGGGCAAGCCGAAGTTGCTCCGCTTTTCCGCGGAAGGTT
CTGAGTACACGGCCGACGACTTCGGCGCCGGGGGGGGCTTTGACGAGATG
TACGAAAGGTGAGAAGAGGAGGCGAGACACGGAAGAGAGCGGAGAGGACC
CTTTCCCTTGCGAAGAAGTGTGTTCAGACGCGCCGCCACGTACGAGCCTC
TTATTTGGCCGAGGCTCGTTTCTTGTTTTGTCTATGGGGCACTGTACCCC
TACGGCGACTTTGTTGGGTTTGGTGTAGGACTGAGCACCTGATCTCTTGG
CCAAGTTCTTAGGTTTTGGATTTTTTTTTAGGCTCAAGGTCTGAACTGTT
CATGACCAAGTTCTTAGATTTCGGATAACTTTTTAAGCTCAAGTTCTTAA
CTGCTAGATTCTCAAGTGGTGCCGCATTATATGGCGATGGCGATGTGGTG
ACACATTTCTTGAATCAAACGGGGGACGATATCCGCCCGACTTGCACGAG
AGGTGAGCGAGGCCTGCCACCGATAGAGGACTGGGCAACAACCCTAGAAG
TTGGAGATTCCCATGCCCTTCGTGTCCAATATGTAGGCCGCACGCTCCGA
TGATGCTTGGATATTTGATTGAGTCCTAGTTCACGCAAGTGTCTTTGCCC
TCCCTGCGATTTGTGCCGTCCCCATGAAGATATAGGTTTCACCACGCTCG
ACCGGTTTTCCCGTTTCCTTGTCGTTGTTCCAGTTCCCACGGTGCGGTAC
ACTGCACCCACCCACCGAGTGTTGCTTGTTTGTGTGTGTGTGTTTTCTCT
GTCTCTCCCCCCGTTTCCCACGGATAACTCCCCCCCTTTTTTTTTATGGT
ACGGTCTTTCGTTTTTTCTCGTAGTCTCTCTCTCTGTTTTTCGCGGATTA
CTTTACCTCTTTTTCTTCCAGACGTTTCGACGTTTTTCTTTTCACTTATC
TCTCTTTCACTTATCTCTCTCTTTCCCTGTTTCCCGGCGGATTCCGTGTA
CACGTTGGTTTGTTTTTTCAGACGGTACGCCGGGTTCAGTGCGCTCATTA
AGCAAGCCGGGGGTCTCGCAGCCAAGAGGGCGAGGTTGAGAGCGGGGTAC
CCCGACGACCACGTGGAGAGCCATCGCGAGAGGAGGTCGAGGGTGAGTGC
TATGAGTCGAGCTGCGGCCTTGCAGGCGCGGAACTCGTGTGTTGTGCGAA
AAGCTAGCGCGACTTGTTCGGTGGTTTTCTGTCCCCCCGTTGATGTCTAC
CACCGAGCCCACGGTATGGGCGGCTGGTAGACTTGTAGACAGGGCTTTGC
ATGGGAAGTGATAAGTGCTTTGGTTGAGTTTGAGGATGGGAGAAGGTAGT
GCTTGGGAGGGAAATAGAGCAGGTGCTGCGGCTGTCAGTGCAGGTGAACT
AATATATATATAGTAGTGGAGCGGTTTTCAGAGAGACGCGCGGCCGAGGG
TGGCACTTATATTGTAACACGTTGTTTTTCTGTTGCCGTGTGTTTGAATT
TTGCGGGCGTTCGTGAATTGCAGCACTGTTCACGGCACACAGCGGTGACC
TAACGCTTGCTTCGCGTGCCGAGGCCATTCCATGTGCGTGGTAGCGGTTT
TGGAGAGCGTCCCAGACATACAAGGATGCATTAGAGGCGACAGCAGTGTG
CATACCCCCCCCCCCGGGCACCGCAGCATCACACCACGCCCCTATGTCCG
TAAACAAGACAGACAGACGTTGGCATATTTCTCGATCGGCCGCGCACCGA
GAAACAAAGTAAGCCCAGTTTGCAGCCGATTTCCCTCCACTCACTGAAAG
ACTTCAGCACATACATTTCGACTGCGTTTATACCTCGAGCGGGTAGTCTT
GCTATGTTTTTATATATATTTTTTCATAGCAATACGTTATGTTGCCGCTG
CCTTCCTTGCTGGCTGGCTGACTGCAGGAGAAGACCAGCCGCGAAGCCGA
AGCTATCCCTTGGGACTTGGGCGCAGCACGAGCAGCTGCCCGGCCTACCG
TGGCAGCGGCCCCAGGTGGCGGTGACGGAGACGGCGGCGGCGGCGTCAGC
GATGGTGGCGGTGGCGACGGCGACGGCGGCGGCGGCGGCGGTCGGAGTGG
TGGCCCAGGCGGCGCGATCTGCGGCAGCGGATTCGGGGATGATCTCTTCG
CGGGGGACGCCGCGGCGGTACTACAGCAGTCCGCAGAACAACAGGAAAAT
GAACAGTGAGTTGGCGTCATTTTTGGACGCCGCCATGGGTAACACAGGGT
GCACGAGACGGATACACACACCGACAGCAGTTTTAGAGTGCATAGGCTTC
TTCCCCTTTTCAATGTCACTCTCTCTAACGTGCTGGCCACAGAGCCGCCG
CCACCAGTTTTAGGAGTCCTTTCTTCTTGTTCATACCCCTCTTACGTGCT
GAGCTCAAAGCCACCTCTCGCTGCCATCTCCACCGTCACCGTCACCGCCT
CCGGATGCACATGCCCGCAGTTTTAGAGTGCGTCTTCTTCCTTTTTCAAT
ATCCCTCTCTCTGACGTACTGGCCTCAAAGCCACCGCCTCACGTGTGCCC
CTCCCCTCTGCGACAACTCGCGTGTGTGATGCTGTCAAATACATAGCGAC
GGACAACTCCCGGATGCTGATCTGGACGCGCATCCGAACCCTCACATCGG
CCCCGACTCCCACCGCCTGCTCCCGGACGAAGTGGAAGCGGCGCTCAGGG
GCCACGCAGAGGAGAGCGCGGACGGGTTCGACGCCTCTTTCGCGGCCCAG
ATGCAGCACAGGTGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig11688:503..4267+ >mRNA_E-fasciculatus_F_contig11688.1331.1 ID=mRNA_E-fasciculatus_F_contig11688.1331.1|Name=mRNA_E-fasciculatus_F_contig11688.1331.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2118bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11688:503..4267+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGCCAATGCTGGAGGCGGTTGCCGAGACCGAGGAGCCCCTCGGCTCGGA CGACGCAGGCGAGCCTCCTTCGCCGTACGGGATGTCGCCGGGGCTGGCCG GCGGCGCCCCGCGAGCCACCCCGGACTACGCCCGAAAGACCTGGAAGGCT TATCACGAGCGGCAGGCGCTGTTGGCGGGACGGCGGCAGCTCTCGAGGTC CGTGGAGGTGGATCCCGTCGTGTGGGGGGACCTGATAGGGAGGAAACTCG GCGAGCTGATCGAGGGGGAGAGGAACCACCCGCGCTGCGTGGTCCGGGGC GGGGCGGCGGATAGGGACGGGGGGCACTGCCTGCTGCCAGATGCCAATGC TGGAGGCGGTTGCCGAGACCGAGGAGCCCCTCGGCTCGGACGACGCAGGC GAGCCTCCTTCGCCGTACGGGATGTCGCCGGGGCTGGCCGGCGGCGCCCC GCGAGCCACCCCGGACTACGCCCGAAAGACCTGGAAGGCTTATCACGAGC GGCAGGCGCTGTTGGCGGGACGGCGGCAGCTCTCGAGGTCCGTGGAGGTG GATCCCGTCGTGTGGGGGGACCTGATAGGGAGGAAACTCGGCGAGCTGAT CGAGGGGGAGAGGAACCACCCGCGCTGCGTGGTCCGGGGCGGGGCGGCGG ATAGGGACGGGGGGCACTGCCTGCTGCCAGAGCTGGATGACATTCGCTTG CACAGCGGGCATGAGCAAGCCGTGGCGGCGGCGGTGGGCAAGCCGAAGTT GCTCCGCTTTTCCGCGGAAGGTTCTGAGTACACGGCCGACGACTTCGGCG CCGGGGGGGGCTTTGACGAGATGTACGAAAGAGCTGGATGACATTCGCTT GCACAGCGGGCATGAGCAAGCCGTGGCGGCGGCGGTGGGCAAGCCGAAGT TGCTCCGCTTTTCCGCGGAAGGTTCTGAGTACACGGCCGACGACTTCGGC GCCGGGGGGGGCTTTGACGAGATGTACGAAAGACGGTACGCCGGGTTCAG TGCGCTCATTAAGCAAGCCGGGGGTCTCGCAGCCAAGAGGGCGAGGTTGA GAGCGGGGTACCCCGACGACCACGTGGAGAGCCATCGCGAGAGGAGGTCG AGGACGGTACGCCGGGTTCAGTGCGCTCATTAAGCAAGCCGGGGGTCTCG CAGCCAAGAGGGCGAGGTTGAGAGCGGGGTACCCCGACGACCACGTGGAG AGCCATCGCGAGAGGAGGTCGAGGGAGAAGACCAGCCGCGAAGCCGAAGC TATCCCTTGGGACTTGGGCGCAGCACGAGCAGCTGCCCGGCCTACCGTGG CAGCGGCCCCAGGTGGCGGTGACGGAGACGGCGGCGGCGGCGTCAGCGAT GGTGGCGGTGGCGACGGCGACGGCGGCGGCGGCGGCGGTCGGAGTGGTGG CCCAGGCGGCGCGATCTGCGGCAGCGGATTCGGGGATGATCTCTTCGCGG GGGACGCCGCGGCGGTACTACAGCAGTCCGCAGAACAACAGGAAAATGAA CAGAGAAGACCAGCCGCGAAGCCGAAGCTATCCCTTGGGACTTGGGCGCA GCACGAGCAGCTGCCCGGCCTACCGTGGCAGCGGCCCCAGGTGGCGGTGA CGGAGACGGCGGCGGCGGCGTCAGCGATGGTGGCGGTGGCGACGGCGACG GCGGCGGCGGCGGCGGTCGGAGTGGTGGCCCAGGCGGCGCGATCTGCGGC AGCGGATTCGGGGATGATCTCTTCGCGGGGGACGCCGCGGCGGTACTACA GCAGTCCGCAGAACAACAGGAAAATGAACACGACGGACAACTCCCGGATG CTGATCTGGACGCGCATCCGAACCCTCACATCGGCCCCGACTCCCACCGC CTGCTCCCGGACGAAGTGGAAGCGGCGCTCAGGGGCCACGCAGAGGAGAG CGCGGACGGGTTCGACGCCTCTTTCGCGGCCCAGATGCAGCACAGGTGAC GACGGACAACTCCCGGATGCTGATCTGGACGCGCATCCGAACCCTCACAT CGGCCCCGACTCCCACCGCCTGCTCCCGGACGAAGTGGAAGCGGCGCTCA GGGGCCACGCAGAGGAGAGCGCGGACGGGTTCGACGCCTCTTTCGCGGCC CAGATGCAGCACAGGTGA back to top
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