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Homology
BLAST of mRNA_E-fasciculatus_F_contig11679.1326.1 vs. uniprot
Match: D7G7E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E6_ECTSI) HSP 1 Score: 167 bits (423), Expect = 3.050e-42 Identity = 172/239 (71.97%), Postives = 180/239 (75.31%), Query Frame = 1
Query: 715 TGVEIKTEVSGSG------GDRVDGSEERGDGKDALARLMTGSPPPVSPAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------EDGARSIVLAGGLQAWQVAFVLEVADGAVLNAWSKTLGDSVAALESADAPEGDLEPGWLMQSRLLSSIARVVSTAPVAVQQLFDLGVHSLL 1377
TGVEIKTEV G G GDRV EERG+ +DALARL+TG PP V A A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EDGARS+VLAGGL+AWQVAFVLEVADGAVL+AWSKTLGDSVAALESADAPEG+LEPGWLMQSRLLSSIARVVSTAPVAVQQLFDLG + L
Sbjct: 280 TGVEIKTEVGGVGDXXXXXGDRV---EERGEEEDALARLLTGLPPSVPAATAAGPATAVEPDPMEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGDLFTALGGTEAXXXXXXXXXRGEDGARSVVLAGGLEAWQVAFVLEVADGAVLSAWSKTLGDSVAALESADAPEGELEPGWLMQSRLLSSIARVVSTAPVAVQQLFDLGARTKL 515
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1509 |
| Cds size | 1509 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11679.1326.1 >prot_E-fasciculatus_F_contig11679.1326.1 ID=prot_E-fasciculatus_F_contig11679.1326.1|Name=mRNA_E-fasciculatus_F_contig11679.1326.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=503bp
PSGRSPGGGGGGEEEEPVSVGEEEEEGKGRPTGRSTESSSPSGRSGGGSG
SVGRETTPAAAAAAATAEGEGKEGSTERSENRGGEGNAEEKAAAGDDSKG
DVHSAKRRKRTSDAAAAAAAGGKGGGSGDADDDDDVDAAAAAAAAAVAAA
EGGGGGDGAEVSPPAASASSKKKKGKGKAKGTQPSSSPSPGGGAATGAAA
GATAGISPSASAPASPPPPAAAGGRGSDRGAGGGGGGNTGVEIKTEVSGS
GGDRVDGSEERGDGKDALARLMTGSPPPVSPAGAAATAVAPQPMEEDGEE
QEEEEEDEEEDDDEEEEEEEEEEEEAAGGSGGAASNSGGGGGGGWGDLFT
SVGGNDASSSGGGGGGGGEDGARSIVLAGGLQAWQVAFVLEVADGAVLNA
WSKTLGDSVAALESADAPEGDLEPGWLMQSRLLSSIARVVSTAPVAVQQL
FDLGVHSLLRRILSDYVWCGDLADGGGEVATTITAPSPSTAALLLSDSRP
TAA back to topmRNA from alignment at E-fasciculatus_F_contig11679:1211..4333- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig11679.1326.1 ID=mRNA_E-fasciculatus_F_contig11679.1326.1|Name=mRNA_E-fasciculatus_F_contig11679.1326.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3123bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11679:1211..4333- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTTCAGGCCGCTCCCCTGGCGGCGGCGGCGGCGGGGAGGAAGAAGAACC
CGTGTCTGTTGGGGAGGAAGAAGAAGAAGGAAAGGGCCGTCCCACGGGAC
GTTCCACGGAGTCATCATCCCCGTCGGGCCGCTCCGGCGGCGGCAGCGGT
AGCGTCGGCCGGGAAACGACGCCTGCGGCGGCAGCGGCGGCGGCGACGGC
GGAAGGAGAAGGAAAGGAAGGCTCCACGGAACGATCCGAGAACCGGGGAG
GAGAAGGAAATGCCGAGGAAAAGGCGGCCGCTGGGGATGGTGCGGAGGAC
CCGCCGAGGGCCCCGTCTTCCGCCTCCAAGAAGAGGAAGGGGAAAGGAAG
GGCGGCGGCTGGGGGTGGCGCCGGCGCCACCGCCGCCGCTACCGACGACC
GTGCCGACGACGGAGAAAGTGGGGGGAGCAAAGGGAAAGGGGGAGGAAGG
GACGAGAGTGCTACCCCGTCCCCTACCTCATTTCCAGCAGGGAGAACACC
GCCGCCGCCGCCGCCGTCGTCGTCGTTATCATCCGCTGGTCCAGACTCTA
AGGGCGACGTTCACTCCGCCAAGAGACGGAAGAGGACCAGCGATGCCGCC
GCCGCCGCCGCCGCGGGTGGCAAGGGCGGCGGAAGCGGCGATGCTGATGA
TGATGACGATGTCGATGCAGCAGCAGCGGCGGCGGCGGCGGCAGTAGCAG
CGGCAGAAGGCGGAGGAGGAGGAGATGGCGCGGAGGTCTCACCGCCAGCG
GCATCGGCATCGTCGAAGAAGAAGAAGGGGAAGGGGAAGGCGAAGGGGAC
TCAGCCATCATCATCACCCTCCCCGGGAGGAGGGGCGGCAACCGGAGCGG
CGGCGGGGGCGACGGCGGGGATATCGCCCTCGGCGAGTGCGCCCGCGTCA
CCCCCTCCTCCTGCTGCTGCTGGTGGTCGGGGAAGCGACCGGGGTGCCGG
CGGCGGCGGCGGCGGCAACACCGGCGTTGAAATCAAGACCGAGGTTAGCG
GGAGCGGCGGTGACCGGGTTGATGGTTCGGAGGAGAGAGGGGACGGGAAG
GATGCTCTTGCCCGGCTTATGACGGGATCACCACCGCCCGTGTCGCCGGC
GGGGGCGGCAGCGACAGCGGTAGCGCCCCAACCGATGGAAGAGGATGGGG
AGGAGCAGGAGGAAGAGGAGGAGGATGAGGAAGAAGACGACGACGAGGAG
GAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGCCGCCGGTGGCAGCGGTGG
CGCTGCCAGCAATAGCGGCGGCGGTGGCGGCGGGGGGTGGGGCGATCTGT
TCACCTCTGTGGGAGGGAATGACGCTTCATCATCTGGTGGTGGTGGTGGC
GGCGGTGGCGAGGATGGCGCTAGGTCTATTGTTCTGGCAGGCGGGCTACA
AGCATGGCAGGTGAGAGAGGCGCACGGGGGGGCTGTGGTGTCGTTGGTTG
TCCCGGGACCAGTTGATAGGTGGTATCAGGACGGCTGTTGACGCTCAGCG
CAAGAGCTATGCATACGAGAGATAACGCCCCTTTATCAACTGAACTCTTC
TCACGACACTCTCCCCTTTGCCCACGCCAATACCAACGACCATGACAACA
ACGACGACGACGACGGCGATAAGGTGGCGTTTGTCCTTGAGGTGGCGGAC
GGGGCTGTCCTAAACGCTTGGTCAAAGACCCTGGGAGACAGTGTGGCTGC
ACTGGAAAGTGAGGAGACTTAAGTGACTCGGGTCAATCTTGTTGGGTTTT
TTCATCACTATATGTATCAATGTCGATGTGTCAAACGACACTCGATTTTT
TTTCCACGTCTGTGTGTGTGGGACGCTGTGTTCCTTGGCATTTGAAGGCT
TCCTTATTTTTTCTCATGGCCTTCGATCAATGTCCACGTCAAACGACACT
CGATTTCAGCAACATCCGTGTGTGTAGGGACTCTGTGGCGTGGCAAGACT
GCTTATTTCTCGTTGTTTTGCGTTTACCTAGTTTTTTGTTGGTTCTACAG
GTCGATTTGTTTCTTGTTTTTGTATTCCTTGGACGGCCCTTTTTAGTGAT
GGTTTACTCGGCTGGCACAAACTTAAGCACCAAGTCATTCTGTACTTTGA
ACAACGCCGGTGTCGTTTCTCTGGACACGTACTACCGTCTAGCTAGTAGA
AGTGGAGGAAGGGGGCCAGAGGGGCAGACGACAAAATCCAATGATGGGAG
GAAAAAAAAAAAAAACGGCACTGAACACCCTCCCCCGACGGTATTGGCTT
TGTCGTTCTGTAGTCCATGGCACAGTAAGTAGTACGGCAAGCCTTGATCA
TTTTTGTCGGTTTGTTTCTGTATCCCTTGGTAGCAGTACGGCACATGTGT
TGATCATTTATCTGTTTCGCGCTAACCCAGGTGCCGACGCTCCGGAGGGA
GACCTCGAGCCAGGCTGGCTGATGCAGTCTCGCCTGCTGTCGTCCATCGC
GCGAGTGGTGTCGACGGCTCCCGTGGCTGTACAGCAGCTCTTCGACCTCG
GTACGCACACGAAACTTTAACTTGATCACAGATTCTTCCTTTCTGTTTAT
TGACCCATATTGTCTTCTTTGTGATGTTTATTTGTCTTGCTTTTTTCTTC
TTGATATATGGGAATCGACCGCGTAGGGGGGGTACCATCTCTCCGCCCCT
CACGGTGTAGTCTTTTTGTGTTCTAGTGTTGTATATTTGCTAAAGATGGC
CACGCAGCTGGTTCAACCAAGCCCGTCGTCCATTCCGGCGTTTTGCGGCT
TCTCCTCCTCGTCGTCCTCCTCCTCCTCCGAACGGGGGCGCCGCTTGAGA
AGCTACAGAACGGCGACGGGCAGCTGTATGCATGCACAACAGCTCGCCCG
CCCGCCGGCCTGGCCACGCTCAGTGAAGCCGGGAGCATAAGCGACGCCAG
ATGTTGATGATTATTAACGCTACTGCTGCTGCTGCTCCTCCTCCGTTGCC
CCCCCCCCCCCCCCCCCTGCCCAGGTGTACACTCGCTGCTACGGCGCATC
CTGTCCGACTACGTGTGGTGCGGAGACCTGGCGGACGGGGGCGGGGAGGT
GGCTACTACTATCACCGCCCCCTCCCCCTCCACCGCTGCATTACTGCTGT
CGGATTCTCGTCCCACAGCCGCG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig11679:1211..4333- >mRNA_E-fasciculatus_F_contig11679.1326.1 ID=mRNA_E-fasciculatus_F_contig11679.1326.1|Name=mRNA_E-fasciculatus_F_contig11679.1326.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3018bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11679:1211..4333- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTTCAGGCCGCTCCCCTGGCGGCGGCGGCGGCGGGGAGGAAGAAGAACC
CGTGTCTGTTGGGGAGGAAGAAGAAGAAGGAAAGGGCCGTCCCACGGGAC
GTTCCACGGAGTCATCATCCCCGTCGGGCCGCTCCGGCGGCGGCAGCGGT
AGCGTCGGCCGGGAAACGACGCCTGCGGCGGCAGCGGCGGCGGCGACGGC
GGAAGGAGAAGGAAAGGAAGGCTCCACGGAACGATCCGAGAACCGGGGAG
GAGAAGGAAATGCCGAGGAAAAGGCGGCCGCTGGGGATGCCTTCAGGCCG
CTCCCCTGGCGGCGGCGGCGGCGGGGAGGAAGAAGAACCCGTGTCTGTTG
GGGAGGAAGAAGAAGAAGGAAAGGGCCGTCCCACGGGACGTTCCACGGAG
TCATCATCCCCGTCGGGCCGCTCCGGCGGCGGCAGCGGTAGCGTCGGCCG
GGAAACGACGCCTGCGGCGGCAGCGGCGGCGGCGACGGCGGAAGGAGAAG
GAAAGGAAGGCTCCACGGAACGATCCGAGAACCGGGGAGGAGAAGGAAAT
GCCGAGGAAAAGGCGGCCGCTGGGGATGACTCTAAGGGCGACGTTCACTC
CGCCAAGAGACGGAAGAGGACCAGCGATGCCGCCGCCGCCGCCGCCGCGG
GTGGCAAGGGCGGCGGAAGCGGCGATGCTGATGATGATGACGATGTCGAT
GCAGCAGCAGCGGCGGCGGCGGCGGCAGTAGCAGCGGCAGAAGGCGGAGG
AGGAGGAGATGGCGCGGAGGTCTCACCGCCAGCGGCATCGGCATCGTCGA
AGAAGAAGAAGGGGAAGGGGAAGGCGAAGGGGACTCAGCCATCATCATCA
CCCTCCCCGGGAGGAGGGGCGGCAACCGGAGCGGCGGCGGGGGCGACGGC
GGGGATATCGCCCTCGGCGAGTGCGCCCGCGTCACCCCCTCCTCCTGCTG
CTGCTGGTGGTCGGGGAAGCGACCGGGGTGCCGGCGGCGGCGGCGGCGGC
AACACCGGCGTTGAAATCAAGACCGAGGTTAGCGGGAGCGGCGGTGACCG
GGTTGATGGTTCGGAGGAGAGAGGGGACGGGAAGGATGCTCTTGCCCGGC
TTATGACGGGATCACCACCGCCCGTGTCGCCGGCGGGGGCGGCAGCGACA
GCGGTAGCGCCCCAACCGATGGAAGAGGATGGGGAGGAGCAGGAGGAAGA
GGAGGAGGATGAGGAAGAAGACGACGACGAGGAGGAGGAAGAGGAGGAGG
AGGAGGAAGAGGAGGCCGCCGGTGGCAGCGGTGGCGCTGCCAGCAATAGC
GGCGGCGGTGGCGGCGGGGGGTGGGGCGATCTGTTCACCTCTGTGGGAGG
GAATGACGCTTCATCATCTGGTGGTGGTGGTGGCGGCGGTGGCGAGGATG
GCGCTAGGTCTATTGTTCTGGCAGGCGGGCTACAAGCATGGCAGACTCTA
AGGGCGACGTTCACTCCGCCAAGAGACGGAAGAGGACCAGCGATGCCGCC
GCCGCCGCCGCCGCGGGTGGCAAGGGCGGCGGAAGCGGCGATGCTGATGA
TGATGACGATGTCGATGCAGCAGCAGCGGCGGCGGCGGCGGCAGTAGCAG
CGGCAGAAGGCGGAGGAGGAGGAGATGGCGCGGAGGTCTCACCGCCAGCG
GCATCGGCATCGTCGAAGAAGAAGAAGGGGAAGGGGAAGGCGAAGGGGAC
TCAGCCATCATCATCACCCTCCCCGGGAGGAGGGGCGGCAACCGGAGCGG
CGGCGGGGGCGACGGCGGGGATATCGCCCTCGGCGAGTGCGCCCGCGTCA
CCCCCTCCTCCTGCTGCTGCTGGTGGTCGGGGAAGCGACCGGGGTGCCGG
CGGCGGCGGCGGCGGCAACACCGGCGTTGAAATCAAGACCGAGGTTAGCG
GGAGCGGCGGTGACCGGGTTGATGGTTCGGAGGAGAGAGGGGACGGGAAG
GATGCTCTTGCCCGGCTTATGACGGGATCACCACCGCCCGTGTCGCCGGC
GGGGGCGGCAGCGACAGCGGTAGCGCCCCAACCGATGGAAGAGGATGGGG
AGGAGCAGGAGGAAGAGGAGGAGGATGAGGAAGAAGACGACGACGAGGAG
GAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGCCGCCGGTGGCAGCGGTGG
CGCTGCCAGCAATAGCGGCGGCGGTGGCGGCGGGGGGTGGGGCGATCTGT
TCACCTCTGTGGGAGGGAATGACGCTTCATCATCTGGTGGTGGTGGTGGC
GGCGGTGGCGAGGATGGCGCTAGGTCTATTGTTCTGGCAGGCGGGCTACA
AGCATGGCAGGTGGCGTTTGTCCTTGAGGTGGCGGACGGGGCTGTCCTAA
ACGCTTGGTCAAAGACCCTGGGAGACAGTGTGGCTGCACTGGAAAGTGGC
GTTTGTCCTTGAGGTGGCGGACGGGGCTGTCCTAAACGCTTGGTCAAAGA
CCCTGGGAGACAGTGTGGCTGCACTGGAAAGTGCCGACGCTCCGGAGGGA
GACCTCGAGCCAGGCTGGCTGATGCAGTCTCGCCTGCTGTCGTCCATCGC
GCGAGTGGTGTCGACGGCTCCCGTGGCTGTACAGCAGCTCTTCGACCTCG
GTGCCGACGCTCCGGAGGGAGACCTCGAGCCAGGCTGGCTGATGCAGTCT
CGCCTGCTGTCGTCCATCGCGCGAGTGGTGTCGACGGCTCCCGTGGCTGT
ACAGCAGCTCTTCGACCTCGGTGTACACTCGCTGCTACGGCGCATCCTGT
CCGACTACGTGTGGTGCGGAGACCTGGCGGACGGGGGCGGGGAGGTGGCT
ACTACTATCACCGCCCCCTCCCCCTCCACCGCTGCATTACTGCTGTCGGA
TTCTCGTCCCACAGCCGCGGTGTACACTCGCTGCTACGGCGCATCCTGTC
CGACTACGTGTGGTGCGGAGACCTGGCGGACGGGGGCGGGGAGGTGGCTA
CTACTATCACCGCCCCCTCCCCCTCCACCGCTGCATTACTGCTGTCGGAT
TCTCGTCCCACAGCCGCG back to top
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