mRNA_E-fasciculatus_F_contig1161.1289.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1161.1289.1
Unique NamemRNA_E-fasciculatus_F_contig1161.1289.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1161.1289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1161contigE-fasciculatus_F_contig1161:13366..14512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size894
Cds size891
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927671.8606596-CDS-E-fasciculatus_F_contig1161:13365..135091622927671.8606596-CDS-E-fasciculatus_F_contig1161:13365..13509Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1161 13366..13509 +
1695995644.1296072-CDS-E-fasciculatus_F_contig1161:13365..135091695995644.1296072-CDS-E-fasciculatus_F_contig1161:13365..13509Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1161 13366..13509 +
1622927671.8733525-CDS-E-fasciculatus_F_contig1161:13763..145101622927671.8733525-CDS-E-fasciculatus_F_contig1161:13763..14510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1161 13764..14510 +
1695995644.1388764-CDS-E-fasciculatus_F_contig1161:13763..145101695995644.1388764-CDS-E-fasciculatus_F_contig1161:13763..14510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1161 13764..14510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1161.1289.1prot_E-fasciculatus_F_contig1161.1289.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1161 13366..14510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1161.1289.1

>prot_E-fasciculatus_F_contig1161.1289.1 ID=prot_E-fasciculatus_F_contig1161.1289.1|Name=mRNA_E-fasciculatus_F_contig1161.1289.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=297bp
PPRPPRSPRSAFPILRTNKEEEEDDDDDDDGEKAKRQDSSNPAPNPSPKQ
PAPRHSATPATRRHSDPVPVGNEGERVEQFVTHLGARKQNVMELADEVVL
DTQAATLNDESGETGGCDFELPTCLTRDAKVADLTLDYSRRLLLVGDLGK
RFLLEGLDTLTYEPPQLPEMGVPSFGLLLNIARGPGILQCIVELTSEQRR
DDRLDRAKVLEGFRDQLLHSIKARCPAMPLQSNSLPNLMCRSHLMIPAPV
LREALEENNVKYVYHSMWGMKCSTSDYYKHLDDASVRAHETSAGDIE
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mRNA from alignment at E-fasciculatus_F_contig1161:13366..14512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1161.1289.1 ID=mRNA_E-fasciculatus_F_contig1161.1289.1|Name=mRNA_E-fasciculatus_F_contig1161.1289.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1147bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1161:13366..14512+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCACCTCGACCTCCACGGTCTCCACGGTCTGCATTTCCAATACTCAGGAC
AAACAAAGAGGAGGAGGAGGACGACGACGACGACGACGACGGCGAAAAAG
CAAAGCGACAAGACTCTTCTAATCCTGCTCCAAACCCGTCGCCGGTGAGC
TAGTCACGCGTAAACGGCCAAGAGAGTGTATGCTTAGGAACGTTTGATAG
TGCGGACTATGGAGGCCTGTGTAATATGAAGTATGGGTCTCTCCTTGTCC
CAGCGCATCGCTTCTTCGCTAATGGATACCACGCCAACGCTGCATTGTCT
CCTGAAACCAGCTGTACTCCGACGTAACAACCCCAACGTGTTGCCAACCT
CTTGGAATGCGTTTCCCTTTCCCGATGCCCTACGCCCTTGTGGAGCAGAA
GCAGCCTGCACCCCGTCATTCTGCCACGCCGGCCACACGCAGGCACTCGG
ACCCAGTCCCAGTGGGGAACGAGGGGGAGAGGGTTGAGCAGTTTGTCACA
CACCTGGGCGCGAGGAAACAAAACGTGATGGAGCTAGCTGACGAAGTCGT
GTTAGATACACAAGCTGCTACCTTAAATGATGAGTCAGGCGAGACGGGTG
GTTGCGACTTTGAACTCCCCACGTGTCTTACTCGCGACGCCAAGGTTGCG
GACCTCACCCTAGACTATTCTCGTCGACTGCTTCTTGTTGGGGACCTCGG
CAAACGTTTCCTTCTGGAAGGCTTGGACACTCTGACATACGAGCCACCGC
AGCTACCTGAGATGGGCGTACCATCGTTTGGCCTGTTGCTCAATATCGCC
CGAGGTCCGGGGATCCTACAGTGCATCGTGGAGTTGACGTCGGAACAGAG
GAGGGACGACAGACTTGACAGGGCAAAAGTACTAGAGGGTTTCCGAGATC
AACTCCTTCACTCCATCAAAGCCCGTTGCCCGGCGATGCCCCTCCAGTCG
AACTCTCTTCCAAACCTGATGTGCCGCAGTCACCTAATGATTCCTGCACC
GGTTCTGAGGGAAGCCCTCGAGGAGAACAACGTCAAGTACGTCTATCATT
CCATGTGGGGCATGAAGTGCTCCACATCCGACTACTACAAGCACCTCGAC
GACGCGTCGGTTCGTGCTCATGAAACCTCAGCGGGAGATATTGAGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1161:13366..14512+

>mRNA_E-fasciculatus_F_contig1161.1289.1 ID=mRNA_E-fasciculatus_F_contig1161.1289.1|Name=mRNA_E-fasciculatus_F_contig1161.1289.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1782bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1161:13366..14512+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCACCTCGACCTCCACGGTCTCCACGGTCTGCATTTCCAATACTCAGGAC
AAACAAAGAGGAGGAGGAGGACGACGACGACGACGACGACGGCGAAAAAG
CAAAGCGACAAGACTCTTCTAATCCTGCTCCAAACCCGTCGCCGCCACCT
CGACCTCCACGGTCTCCACGGTCTGCATTTCCAATACTCAGGACAAACAA
AGAGGAGGAGGAGGACGACGACGACGACGACGACGGCGAAAAAGCAAAGC
GACAAGACTCTTCTAATCCTGCTCCAAACCCGTCGCCGAAGCAGCCTGCA
CCCCGTCATTCTGCCACGCCGGCCACACGCAGGCACTCGGACCCAGTCCC
AGTGGGGAACGAGGGGGAGAGGGTTGAGCAGTTTGTCACACACCTGGGCG
CGAGGAAACAAAACGTGATGGAGCTAGCTGACGAAGTCGTGTTAGATACA
CAAGCTGCTACCTTAAATGATGAGTCAGGCGAGACGGGTGGTTGCGACTT
TGAACTCCCCACGTGTCTTACTCGCGACGCCAAGGTTGCGGACCTCACCC
TAGACTATTCTCGTCGACTGCTTCTTGTTGGGGACCTCGGCAAACGTTTC
CTTCTGGAAGGCTTGGACACTCTGACATACGAGCCACCGCAGCTACCTGA
GATGGGCGTACCATCGTTTGGCCTGTTGCTCAATATCGCCCGAGGTCCGG
GGATCCTACAGTGCATCGTGGAGTTGACGTCGGAACAGAGGAGGGACGAC
AGACTTGACAGGGCAAAAGTACTAGAGGGTTTCCGAGATCAACTCCTTCA
CTCCATCAAAGCCCGTTGCCCGGCGATGCCCCTCCAGTCGAACTCTCTTC
CAAACCTGATGTGCCGCAGTCACCTAATGATTCCTGCACCGGTTCTGAGG
GAAGCCCTCGAGGAGAACAACGTCAAGTACGTCTATCATTCCATGTGGGG
CATGAAGTGCTCCACATCCGACTACTACAAGCACCTCGACGACGCGTCGG
TTCGTGCTCATGAAACCTCAGCGGGAGATATTGAGAAGCAGCCTGCACCC
CGTCATTCTGCCACGCCGGCCACACGCAGGCACTCGGACCCAGTCCCAGT
GGGGAACGAGGGGGAGAGGGTTGAGCAGTTTGTCACACACCTGGGCGCGA
GGAAACAAAACGTGATGGAGCTAGCTGACGAAGTCGTGTTAGATACACAA
GCTGCTACCTTAAATGATGAGTCAGGCGAGACGGGTGGTTGCGACTTTGA
ACTCCCCACGTGTCTTACTCGCGACGCCAAGGTTGCGGACCTCACCCTAG
ACTATTCTCGTCGACTGCTTCTTGTTGGGGACCTCGGCAAACGTTTCCTT
CTGGAAGGCTTGGACACTCTGACATACGAGCCACCGCAGCTACCTGAGAT
GGGCGTACCATCGTTTGGCCTGTTGCTCAATATCGCCCGAGGTCCGGGGA
TCCTACAGTGCATCGTGGAGTTGACGTCGGAACAGAGGAGGGACGACAGA
CTTGACAGGGCAAAAGTACTAGAGGGTTTCCGAGATCAACTCCTTCACTC
CATCAAAGCCCGTTGCCCGGCGATGCCCCTCCAGTCGAACTCTCTTCCAA
ACCTGATGTGCCGCAGTCACCTAATGATTCCTGCACCGGTTCTGAGGGAA
GCCCTCGAGGAGAACAACGTCAAGTACGTCTATCATTCCATGTGGGGCAT
GAAGTGCTCCACATCCGACTACTACAAGCACCTCGACGACGCGTCGGTTC
GTGCTCATGAAACCTCAGCGGGAGATATTGAG
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