mRNA_E-fasciculatus_F_contig11600.1283.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11600.1283.1
Unique NamemRNA_E-fasciculatus_F_contig11600.1283.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11600.1283.1 vs. uniprot
Match: A0A6H5JC35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 7.730e-42
Identity = 125/308 (40.58%), Postives = 132/308 (42.86%), Query Frame = 1 
Query:    1 RDGFFVTYPAGSPPSSHGAMDTFASSSPSLCAPWADHGGFFPADGFPGPEEAGGSGAGVSGGFGGGGG--------------------QNWASAVRGSECQQ------------QQQP----------------------------------------------------------------------------------------------------------------------EHHMPGFSEGVWYRQQQGPQTLPQEDFGQVDDWLNSPYLLGEDEVGGGHDPDGAVESAARNAATDVENLGIL 474
            R G+FV YP GS P+SH AM TFASSSPSLCAP A++GGFFPADGF GPE+AG SGAGVSGGF                         QNWAS VRGSEC               Q P                                                                                                                      EHHMPGFSE VWY QQQGPQTL QE FGQVDDWLNSPYLL EDE+GGGHD DGAVE AARNAATDV+NLGIL
Sbjct:  199 RAGYFVAYPDGSVPNSHEAMGTFASSSPSLCAPLANYGGFFPADGFTGPEQAGESGAGVSGGFXXXXXXXXXXXXXXXXXXXXXXXXXQNWASTVRGSECTDGSYQSHTSWCSAPQSPLSSPYIMSASSLGSVGPPPAAPAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATGGXXXXXXXXLNPLGGGKCGYGSTQQLLQLQLXXXXXXXXXXXXXXEHHMPGFSESVWYHQQQGPQTLRQEGFGQVDDWLNSPYLLREDEIGGGHDLDGAVEGAARNAATDVDNLGIL 506
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BLAST of mRNA_E-fasciculatus_F_contig11600.1283.1 vs. uniprot
Match: D7G094_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G094_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 4.240e-32
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:  268 MPGFSEGVWYRQQQGPQTLPQEDFGQVDDWLNSPYLLGEDEVGGGHDPDGAVESAARNAATDVENLGIL 474
            MP FSEGVWY QQQGPQTLPQE FG VDDWLNSPYLLGEDE+GG HDPDGAVE AARN+ATDV+NLGIL
Sbjct:    1 MPDFSEGVWYHQQQGPQTLPQEGFGHVDDWLNSPYLLGEDEIGGRHDPDGAVECAARNSATDVDNLGIL 69
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11600.1283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC35_9PHAE7.730e-4240.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G094_ECTSI4.240e-3286.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11600contigE-fasciculatus_F_contig11600:30..2299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-14_005000.1
Exons2
Model size1979
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11600.1283.1prot_E-fasciculatus_F_contig11600.1283.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11600 87..797 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927671.4625108-UTR-E-fasciculatus_F_contig11600:29..861622927671.4625108-UTR-E-fasciculatus_F_contig11600:29..86Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11600 30..86 +
1695995643.9298816-UTR-E-fasciculatus_F_contig11600:29..861695995643.9298816-UTR-E-fasciculatus_F_contig11600:29..86Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11600 30..86 +
1622927671.4999611-UTR-E-fasciculatus_F_contig11600:797..22991622927671.4999611-UTR-E-fasciculatus_F_contig11600:797..2299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11600 798..2299 +
1695995643.9625785-UTR-E-fasciculatus_F_contig11600:797..22991695995643.9625785-UTR-E-fasciculatus_F_contig11600:797..2299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11600 798..2299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927671.4756064-CDS-E-fasciculatus_F_contig11600:86..2691622927671.4756064-CDS-E-fasciculatus_F_contig11600:86..269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11600 87..269 +
1695995643.9399095-CDS-E-fasciculatus_F_contig11600:86..2691695995643.9399095-CDS-E-fasciculatus_F_contig11600:86..269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11600 87..269 +
1622927671.4858894-CDS-E-fasciculatus_F_contig11600:560..7971622927671.4858894-CDS-E-fasciculatus_F_contig11600:560..797Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11600 561..797 +
1695995643.9544683-CDS-E-fasciculatus_F_contig11600:560..7971695995643.9544683-CDS-E-fasciculatus_F_contig11600:560..797Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11600 561..797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11600.1283.1

>prot_E-fasciculatus_F_contig11600.1283.1 ID=prot_E-fasciculatus_F_contig11600.1283.1|Name=mRNA_E-fasciculatus_F_contig11600.1283.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=140bp
MDTFASSSPSLCAPWADHGGFFPADGFPGPEEAGGSGAGVSGGFGGGGGQ
NWASAVRGSECQQQQQPEHHMPGFSEGVWYRQQQGPQTLPQEDFGQVDDW
LNSPYLLGEDEVGGGHDPDGAVESAARNAATDVENLGIL*
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mRNA from alignment at E-fasciculatus_F_contig11600:30..2299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11600.1283.1 ID=mRNA_E-fasciculatus_F_contig11600.1283.1|Name=mRNA_E-fasciculatus_F_contig11600.1283.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2270bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11600:30..2299+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGACGGTTTCTTCGTCACCTACCCAGCCGGGTCTCCGCCTAGCAGCCA
CGGGGCCATGGACACTTTCGCCTCTTCCTCTCCGTCTCTCTGTGCTCCCT
GGGCCGACCACGGAGGCTTCTTCCCCGCCGACGGGTTTCCAGGGCCCGAG
GAGGCGGGAGGGAGCGGAGCCGGTGTGTCGGGTGGATTCGGCGGCGGCGG
CGGGCAGAACTGGGCCAGTGCAGTTCGTGGCTCCGAGTGCGTCGGCGGCA
GCTGTCAGTCTCACAACACCTCTTGGTGTTCTTCCCCGCAGTCGCCGTTG
TCCTCCCCGTACATAGTGTCTTCCTCCTCGCTCGGGTCCGTGGGACCGCC
TCCGGCCGCCGCCGCCGCCGCCGCCGCCGGGGGCCTGAACCCACTCGGCG
GCAGCAGGTACGGCGGTTACGGCAGTACCCAGCAGCTGCAGCAGCTGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAT
GCAGATGCAGATGCAGCAGCTGCAGCAGCAGCAGCAGCAGCAGCAGCCAG
AACACCACATGCCGGGGTTCTCCGAGGGCGTGTGGTACCGCCAGCAACAA
GGGCCGCAGACTCTTCCGCAGGAGGATTTCGGGCAAGTCGACGACTGGTT
GAACTCACCCTATCTGCTCGGGGAAGACGAGGTAGGCGGCGGTCATGACC
CCGACGGCGCGGTAGAAAGTGCCGCCCGAAACGCTGCTACGGACGTCGAG
AACTTGGGGATTCTGTAGCGCACGCACAACTCATACGAAGGAGGGGTGCA
GGGCCTCCACGCACGCGCTCTCTCTCTTGTGGTAGTTGTTGTGCCATTGC
GGGCTTCCCCACGCGTGTTTGGAGACTAAACTCACTTTGCTTGTCTTCGT
CCGCTCAGGAGCTACATTTTTTTGCGCGCGACGTGTCTTATCGCCTCACC
AAGGGCTATTATGAGCGGTAGGGAGATTAATTAGTTTAGTGTTGTTATTA
GAGAAGGGCCAAGACCCAAGTATCATCAGCATATTGTTGTCTTCAGAGAA
AGGCTAAGGGGTTGAGGCTATGGCCACGTTTGTTTCGGGGTGTTGCGGTC
ACGTTTGCTTCCCCCGACGTATGGGCTTTGACCAGGTAATAATTGTAGTC
TACATAGCATGCATGGCGTTATTTCTGCGTGTCTTAGTGCTGTCTTCATT
TGCGTGGCTGTTTTGTCTGTATTTGCTGTGAGATCAAGCTTTGGTCGCCG
TGGTGCATGCGGCAGTTAGCCTTGGAGTGATGTTGACGCAGGCAGGGCCG
AGGCTTACCGGCCGCGCCCCCCCGCCCTCCGAGGCACCTCTTCTTCTGTG
TGTCAGTGGCTTGGTGCGCACGAGAGCGACCGCCGACGTACGCGTTCTCG
AGCAGGCGCACACGTATTAGAAGAGTAGACTCATAGGAGAGAGCCGCCGC
TCTGCCTTGGTTTTTAACGTAGTAGACTGACTGCCCTGTGGCGATGTTGG
TTTTTCGATATGAGGAGAGGTTTGGCGTCGTCGTGCTGGGTCGCTAAAAG
CGATTGTAAGTTAAGTGTGAAGGCGCCGGTGTAGTATGCATGTCATGGGG
TTTGTTTTGCTTGACATCTCAAGTTAATGGTGGCATCCGCATCTATCTGT
GTGCGTGCGCTCTTGTGTGCATATTAGTGTGGTGTGGTGAGGTCTGTGTA
GTAGGTTGGTCGAGTACCGTCCGGATCAGGAGCCAATCGTGTAGAAGAGT
GCGGCTCGGTGGGAATCTCCTGTTCTTCCAAGTCTTTGTAAAGCGTGTTC
GTGTCTGTCTGTACCCGTTTTAAAACGTTTCGGGTATAGTTATGATGGTC
CGTTGGGTGGGTGGGGAATCACATTTATACGGTGGTGTTTTTTTTCTTTT
TGTTATTCTTGGTTAGTTGCGACTTAACATACTACCAACGCAGCGTTTGC
CGCTGTTCGTGCTGTTTGCGTAAAATAGTGGTGATTATTGGTGTCGTCGC
GCTTCGCTATCGTTATTGCTTCTACTGTTTTTCGGCAAACGACTTTATTC
CTTCTTTGTTTTAAAAGGCAACTCGTGGTATTGGGCGAGGGTTCCGAATC
TAGTGTGTCCCGCCTTGCAGGGCAGTTCGCCTGCCGTGTGCTCTATTATA
TAAAGCAACGTTTTCTACTTCTTTCCAGACACGTACGCGTACCTATCTTT
TGCCCTTCACCGGTTTTTGTGTGAGGAATACCGATGATCCGATGTAACAT
CCCAAACAAGGGCAACAGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11600:30..2299+

>mRNA_E-fasciculatus_F_contig11600.1283.1 ID=mRNA_E-fasciculatus_F_contig11600.1283.1|Name=mRNA_E-fasciculatus_F_contig11600.1283.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11600:30..2299+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACACTTTCGCCTCTTCCTCTCCGTCTCTCTGTGCTCCCTGGGCCGA
CCACGGAGGCTTCTTCCCCGCCGACGGGTTTCCAGGGCCCGAGGAGGCGG
GAGGGAGCGGAGCCGGTGTGTCGGGTGGATTCGGCGGCGGCGGCGGGCAG
AACTGGGCCAGTGCAGTTCGTGGCTCCGAGTGCATGGACACTTTCGCCTC
TTCCTCTCCGTCTCTCTGTGCTCCCTGGGCCGACCACGGAGGCTTCTTCC
CCGCCGACGGGTTTCCAGGGCCCGAGGAGGCGGGAGGGAGCGGAGCCGGT
GTGTCGGGTGGATTCGGCGGCGGCGGCGGGCAGAACTGGGCCAGTGCAGT
TCGTGGCTCCGAGTGCCAGCAGCAGCAGCAGCCAGAACACCACATGCCGG
GGTTCTCCGAGGGCGTGTGGTACCGCCAGCAACAAGGGCCGCAGACTCTT
CCGCAGGAGGATTTCGGGCAAGTCGACGACTGGTTGAACTCACCCTATCT
GCTCGGGGAAGACGAGGTAGGCGGCGGTCATGACCCCGACGGCGCGGTAG
AAAGTGCCGCCCGAAACGCTGCTACGGACGTCGAGAACTTGGGGATTCTG
TAGCAGCAGCAGCAGCAGCCAGAACACCACATGCCGGGGTTCTCCGAGGG
CGTGTGGTACCGCCAGCAACAAGGGCCGCAGACTCTTCCGCAGGAGGATT
TCGGGCAAGTCGACGACTGGTTGAACTCACCCTATCTGCTCGGGGAAGAC
GAGGTAGGCGGCGGTCATGACCCCGACGGCGCGGTAGAAAGTGCCGCCCG
AAACGCTGCTACGGACGTCGAGAACTTGGGGATTCTGTAG
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