mRNA_E-fasciculatus_F_contig11583.1265.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11583.1265.1
Unique NamemRNA_E-fasciculatus_F_contig11583.1265.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11583.1265.1 vs. uniprot
Match: D8LJD4_ECTSI (Glutamate--cysteine ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD4_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 5.910e-64
Identity = 110/113 (97.35%), Postives = 110/113 (97.35%), Query Frame = 1 
Query:    1 MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILKGRLVDTDVRWDTIATSVDDRTPAERGLLDADP---EAARDPSMVGDGVARLYKSRYDSISSYL 330
            MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILKGRLVDTDVRWDTIATSVDDRTPAERGLLDADP   EAARDPSMVGDGVARLYKSRYDSISSYL
Sbjct:  239 MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILKGRLVDTDVRWDTIATSVDDRTPAERGLLDADPAAKEAARDPSMVGDGVARLYKSRYDSISSYL 351
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BLAST of mRNA_E-fasciculatus_F_contig11583.1265.1 vs. uniprot
Match: A0A7S3HD86_9STRA (Glutamate--cysteine ligase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HD86_9STRA)

HSP 1 Score: 164 bits (415), Expect = 4.330e-49
Identity = 81/111 (72.97%), Postives = 91/111 (81.98%), Query Frame = 1 
Query:    1 MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILKGRLVDTDVRWDTIATSVDDRTPAERGLLDADPEAAR-DPSMVGDGVARLYKSRYDSISSYL 330
            MDAM FGMG CCLQVTFQARDVDESRYMYDQLAVL+P+MLA+TAATPI KGRL D DVRW  IA SVDDRTPAERG+L  +  AA  DP + G G+  + KSRYDSIS+Y+
Sbjct:   54 MDAMGFGMGMCCLQVTFQARDVDESRYMYDQLAVLAPIMLAMTAATPIFKGRLADIDVRWTVIAQSVDDRTPAERGILSPEETAAAADPRLAGQGIKPIPKSRYDSISTYI 164
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BLAST of mRNA_E-fasciculatus_F_contig11583.1265.1 vs. uniprot
Match: A0A836CE91_9STRA (Glutamate--cysteine ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE91_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.370e-47
Identity = 84/110 (76.36%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:    1 MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILKGRLVDTDVRWDTIATSVDDRTPAERGLLDADPEAARDPSMVGDGVARLYKSRYDSISSYL 330
            MDAMAFGMGCCCLQVTFQ RD+DESR+MYDQLAVLSP+MLAL+AATPILKGRLVDTDVRW+ I+ SVDDRTPAE G  +A      DP++VG G+ RL KSRYDSIS+YL
Sbjct:  213 MDAMAFGMGCCCLQVTFQGRDIDESRFMYDQLAVLSPIMLALSAATPILKGRLVDTDVRWNVISASVDDRTPAELG--EATAAVTPDPTLVGGGIRRLLKSRYDSISTYL 320
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BLAST of mRNA_E-fasciculatus_F_contig11583.1265.1 vs. uniprot
Match: A0A7R9U411_9STRA (Glutamate--cysteine ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U411_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.010e-46
Identity = 82/110 (74.55%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILKGRLVDTDVRWDTIATSVDDRTPAERGLLDADPEAARDPSMVGDGVARLYKSRYDSISSYL 330
            MDAMA+GMGCCCLQVTFQARD+ ESRYMYDQLAVL+P+MLA +AA P+ KGRLVDTDVRW  IA S DDR PAERG    D + ARD +MVGDG+ R+YKSRYDSIS YL
Sbjct:  226 MDAMAYGMGCCCLQVTFQARDLQESRYMYDQLAVLAPIMLAFSAAAPVFKGRLVDTDVRWSVIAESCDDRRPAERGEA-VDLDEARDSTMVGDGIKRVYKSRYDSISRYL 334
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BLAST of mRNA_E-fasciculatus_F_contig11583.1265.1 vs. uniprot
Match: A0A7S3W722_EMIHU (Glutamate--cysteine ligase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W722_EMIHU)

HSP 1 Score: 161 bits (408), Expect = 1.110e-45
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = 1 
Query:    1 MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILKGRLVDTDVRWDTIATSVDDRTPAERGLLDADPEAARDPSMVGDGVARLYKSRYDSISSYL 330
            MDAMAFGMGCCCLQVTFQ R+V ESR+++DQLAVL+PVMLALTAATPI +G L++TDVRWD IA SVDDRTPAERG+ D    AAR P M G GV RL KSRYDSISS++
Sbjct:  164 MDAMAFGMGCCCLQVTFQTRNVAESRHLFDQLAVLAPVMLALTAATPIARGVLLNTDVRWDIIAQSVDDRTPAERGMDDG---AARHPEMAGGGVKRLPKSRYDSISSFI 270
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BLAST of mRNA_E-fasciculatus_F_contig11583.1265.1 vs. uniprot
Match: A0A7S2SFD3_9STRA (Glutamate--cysteine ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFD3_9STRA)

HSP 1 Score: 164 bits (415), Expect = 5.030e-45
Identity = 85/113 (75.22%), Postives = 89/113 (78.76%), Query Frame = 1 
Query:    1 MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILKGRLVDTDVRWDTIATSVDDRTPAERGL---LDADPEAARDPSMVGDGVARLYKSRYDSISSYL 330
            MDAMAFGMGCCCLQVTFQARDVDESRYM+DQLAVLSPV LALTAATP+LKGRL DTDVRWDTIA SVDDRTP ERG      AD E      M G G  RL KSRY S+S Y+
Sbjct:  251 MDAMAFGMGCCCLQVTFQARDVDESRYMFDQLAVLSPVFLALTAATPVLKGRLADTDVRWDTIAASVDDRTPMERGEDAPTAADDERLGRAEMAGGGRRRLRKSRYGSVSGYI 363
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BLAST of mRNA_E-fasciculatus_F_contig11583.1265.1 vs. uniprot
Match: R1D452_EMIHU (Glutamate--cysteine ligase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D452_EMIHU)

HSP 1 Score: 163 bits (413), Expect = 7.040e-45
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 1 
Query:    1 MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILKGRLVDTDVRWDTIATSVDDRTPAERGLLDADPEAARDPSMVGDGVARLYKSRYDSISSYL 330
            MDAMAFGMGCCCLQVTFQ R+V ESR+++DQLAVL+PVMLALTAATPI +G L+DTDVRWD IA SVDDRTPAERG+ D    AAR P M G GV RL KSRYDSISS++
Sbjct:  238 MDAMAFGMGCCCLQVTFQTRNVAESRHLFDQLAVLAPVMLALTAATPIARGVLLDTDVRWDIIAQSVDDRTPAERGMDDG---AARHPEMAGGGVKRLPKSRYDSISSFI 344
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BLAST of mRNA_E-fasciculatus_F_contig11583.1265.1 vs. uniprot
Match: A0A7S3DU52_9STRA (Glutamate--cysteine ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DU52_9STRA)

HSP 1 Score: 154 bits (388), Expect = 9.900e-44
Identity = 75/110 (68.18%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:    1 MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILKGRLVDTDVRWDTIATSVDDRTPAERGLLDADPEAARDPSMVGDGVARLYKSRYDSISSYL 330
            MDAMAFGMGCCCLQVTFQ +D+DESR+MYDQLAV++P+++ALTA+TPILKGRL DTD RW  I+ SVD RTPAERG  D  P A   P +   G  R+YKSRYDSIS+Y+
Sbjct:  197 MDAMAFGMGCCCLQVTFQGKDIDESRFMYDQLAVMAPILMALTASTPILKGRLADTDARWGVISESVDCRTPAERGRND--PNAPH-PELNAQGRRRIYKSRYDSISTYI 303
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BLAST of mRNA_E-fasciculatus_F_contig11583.1265.1 vs. uniprot
Match: A0A7S2K593_9STRA (Glutamate--cysteine ligase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K593_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.210e-43
Identity = 75/110 (68.18%), Postives = 90/110 (81.82%), Query Frame = 1 
Query:    1 MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILKGRLVDTDVRWDTIATSVDDRTPAERGLLDADPEAARDPSMVGDGVARLYKSRYDSISSYL 330
            MDAMAFGMGCCCLQVTFQ  DVDESR++YDQ+AVL+P+++ALTAATPILKGR+VDTD RW  I+ +VDDRTPAERGL + D        +  +G  RLYKSRYDSIS+Y+
Sbjct:  367 MDAMAFGMGCCCLQVTFQNEDVDESRFVYDQIAVLAPILMALTAATPILKGRIVDTDCRWGIISEAVDDRTPAERGLAEQDGSMPTQSELAANGKRRLYKSRYDSISTYI 476
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BLAST of mRNA_E-fasciculatus_F_contig11583.1265.1 vs. uniprot
Match: A0A6V2P2J7_EMIHU (Glutamate--cysteine ligase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2P2J7_EMIHU)

HSP 1 Score: 155 bits (393), Expect = 1.590e-43
Identity = 77/111 (69.37%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:    1 MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILKGRLVDTDVRWDTIATSVDDRTPAERGLLDADPEAARD-PSMVGDGVARLYKSRYDSISSYL 330
            MDAMAFGMGCCCLQVTFQARD+ ESR++YDQLAVL P+MLALTAATPI +G L+DTDVRWD IA SVDDRTPAERG+     E      +M G G  RL+KSRY++IS+Y+
Sbjct:  260 MDAMAFGMGCCCLQVTFQARDLSESRHLYDQLAVLGPIMLALTAATPIARGVLLDTDVRWDIIAQSVDDRTPAERGVAAGGGEGGGGHAAMAGHGTKRLHKSRYETISTYI 370
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11583.1265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJD4_ECTSI5.910e-6497.35Glutamate--cysteine ligase n=1 Tax=Ectocarpus sili... [more]
A0A7S3HD86_9STRA4.330e-4972.97Glutamate--cysteine ligase (Fragment) n=1 Tax=Spum... [more]
A0A836CE91_9STRA1.370e-4776.36Glutamate--cysteine ligase n=1 Tax=Tribonema minus... [more]
A0A7R9U411_9STRA1.010e-4674.55Glutamate--cysteine ligase n=1 Tax=Pinguiococcus p... [more]
A0A7S3W722_EMIHU1.110e-4574.55Glutamate--cysteine ligase n=1 Tax=Emiliania huxle... [more]
A0A7S2SFD3_9STRA5.030e-4575.22Glutamate--cysteine ligase n=1 Tax=Rhizochromulina... [more]
R1D452_EMIHU7.040e-4575.45Glutamate--cysteine ligase n=2 Tax=Emiliania huxle... [more]
A0A7S3DU52_9STRA9.900e-4468.18Glutamate--cysteine ligase (Fragment) n=1 Tax=Amph... [more]
A0A7S2K593_9STRA1.210e-4368.18Glutamate--cysteine ligase n=1 Tax=Leptocylindrus ... [more]
A0A6V2P2J7_EMIHU1.590e-4369.37Glutamate--cysteine ligase n=1 Tax=Emiliania huxle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11583contigE-fasciculatus_F_contig11583:958..2792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue4.9e-54
Seed eggNOG ortholog2880.D8LJD4
Preferred nameGCLC
KEGG rclassRC00064,RC00090
KEGG koko:K11204
KEGG ReactionR00894,R10993
KEGG Pathwayko00270,ko00480,ko01100,ko04212,ko04216,map00270,map00480,map01100,map04212,map04216
KEGG ModuleM00118
GOsGO:0000096,GO:0000166,GO:0000287,GO:0000302,GO:0000303,GO:0000305,GO:0000902,GO:0000904,GO:0001101,GO:0001678,GO:0002009,GO:0002165,GO:0003008,GO:0003013,GO:0003018,GO:0003254,GO:0003674,GO:0003824,GO:0004357,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006082,GO:0006355,GO:0006518,GO:0006520,GO:0006534,GO:0006536,GO:0006575,GO:0006732,GO:0006749,GO:0006750,GO:0006766,GO:0006767,GO:0006790,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006857,GO:0006915,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007568,GO:0007584,GO:0008015,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009058,GO:0009064,GO:0009069,GO:0009266,GO:0009408,GO:0009410,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0012501,GO:0014070,GO:0014823,GO:0015711,GO:0015833,GO:0016043,GO:0016595,GO:0016597,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0017109,GO:0019184,GO:0019219,GO:0019222,GO:0019725,GO:0019748,GO:0019752,GO:0019852,GO:0022008,GO:0023051,GO:0023057,GO:0030030,GO:0030154,GO:0030162,GO:0030182,GO:0030435,GO:0030554,GO:0030587,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031406,GO:0031667,GO:0032268,GO:0032269,GO:0032270,GO:0032354,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032868,GO:0032869,GO:0032870,GO:0032989,GO:0032990,GO:0032991,GO:0033500,GO:0034097,GO:0034284,GO:0034635,GO:0034641,GO:0034698,GO:0035107,GO:0035114,GO:0035120,GO:0035150,GO:0035220,GO:0035239,GO:0035295,GO:0035690,GO:0035728,GO:0035729,GO:0036094,GO:0042176,GO:0042221,GO:0042391,GO:0042398,GO:0042493,GO:0042542,GO:0042592,GO:0042593,GO:0042886,GO:0042939,GO:0042981,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043436,GO:0043523,GO:0043524,GO:0043531,GO:0043603,GO:0043604,GO:0043648,GO:0043934,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0044752,GO:0045454,GO:0045732,GO:0045862,GO:0045892,GO:0045934,GO:0046677,GO:0046685,GO:0046686,GO:0046688,GO:0046872,GO:0046937,GO:0046938,GO:0046982,GO:0046983,GO:0048037,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050662,GO:0050789,GO:0050794,GO:0050801,GO:0050865,GO:0050866,GO:0050880,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051181,GO:0051186,GO:0051188,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051409,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051881,GO:0051900,GO:0055082,GO:0060255,GO:0060429,GO:0060548,GO:0060562,GO:0061136,GO:0061564,GO:0061687,GO:0065007,GO:0065008,GO:0070555,GO:0070848,GO:0070887,GO:0071214,GO:0071229,GO:0071230,GO:0071241,GO:0071248,GO:0071260,GO:0071276,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071363,GO:0071371,GO:0071372,GO:0071375,GO:0071407,GO:0071417,GO:0071495,GO:0071496,GO:0071585,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071840,GO:0072337,GO:0072348,GO:0080090,GO:0090066,GO:0090702,GO:0097066,GO:0097067,GO:0097068,GO:0097069,GO:0097159,GO:0097237,GO:0097367,GO:0097501,GO:0098754,GO:0098849,GO:0099120,GO:0104004,GO:0120036,GO:0120039,GO:1901214,GO:1901215,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901800,GO:1902494,GO:1902679,GO:1903050,GO:1903052,GO:1903320,GO:1903321,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1904386,GO:1904387,GO:1990170,GO:1990748,GO:2000058,GO:2000060,GO:2000112,GO:2000113,GO:2000489,GO:2000490,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.glutamate-cysteine ligase activity
EggNOG OGsKOG3754@1,KOG3754@2759
EC6.3.2.2
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size330
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11583.1265.1prot_E-fasciculatus_F_contig11583.1265.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11583 958..2792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927669.5003948-CDS-E-fasciculatus_F_contig11583:957..10111622927669.5003948-CDS-E-fasciculatus_F_contig11583:957..1011Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11583 958..1011 +
1695995642.8860793-CDS-E-fasciculatus_F_contig11583:957..10111695995642.8860793-CDS-E-fasciculatus_F_contig11583:957..1011Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11583 958..1011 +
1622927669.5180478-CDS-E-fasciculatus_F_contig11583:1960..21521622927669.5180478-CDS-E-fasciculatus_F_contig11583:1960..2152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11583 1961..2152 +
1695995642.9025948-CDS-E-fasciculatus_F_contig11583:1960..21521695995642.9025948-CDS-E-fasciculatus_F_contig11583:1960..2152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11583 1961..2152 +
1622927669.5301945-CDS-E-fasciculatus_F_contig11583:2708..27921622927669.5301945-CDS-E-fasciculatus_F_contig11583:2708..2792Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11583 2709..2792 +
1695995642.9120522-CDS-E-fasciculatus_F_contig11583:2708..27921695995642.9120522-CDS-E-fasciculatus_F_contig11583:2708..2792Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11583 2709..2792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11583.1265.1

>prot_E-fasciculatus_F_contig11583.1265.1 ID=prot_E-fasciculatus_F_contig11583.1265.1|Name=mRNA_E-fasciculatus_F_contig11583.1265.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp
MDAMAFGMGCCCLQVTFQARDVDESRYMYDQLAVLSPVMLALTAATPILK
GRLVDTDVRWDTIATSVDDRTPAERGLLDADPEAARDPSMVGDGVARLYK
SRYDSISSYL
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mRNA from alignment at E-fasciculatus_F_contig11583:958..2792+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11583.1265.1 ID=mRNA_E-fasciculatus_F_contig11583.1265.1|Name=mRNA_E-fasciculatus_F_contig11583.1265.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1835bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11583:958..2792+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATGCCATGGCCTTCGGCATGGGCTGCTGCTGTCTGCAGGTTACATT
TCAGGTGCGGGTGGGGGGGGGGGGTCCCTGCCAACGTGTCATGGGACCGA
AGGAATGCGGCTGCCATAGCACTGCTGTGCCGCAGCGATGACACCATCCT
GTATTTGCAGACGTTAACACATGGACGTGGTAGGATGTGCGATACCGTTG
GTGTGCTGCTCCTCACATGCGCTTTTCAAGGTACGGCAGCGGTGTTGCTG
TTGTCCGGATGTTGCGTTGAAACGTTTCTGCAAAAAAGTAGTTGAAGAAC
CGTGGGGCTTGGGGGGCGGGGTTTCGACACGGTCTACACTCCACCCAAGG
CGTGCCACGTGCACATGTTCTGAAGGGTAACATAACATAACATTCGAGAC
CGCCCTTGGAACGGACCCGTTTAACGTGGCGGCGTGCCCGGTTGTGCACT
TGCAAGCGTCTCGGTATCCCCTATCCCCTGGGTGCCACCACTGTGGATGC
CATCTGCTGTGTGCGTACAGGAGGTGTCCCTTGGTAAGGCCGGTGCCCGA
TGTAGTGCCGGTCAAACCTCTGGGCATGAATGTCCACTCCTATAATAAAC
CCTAGGTTGAGTGCACTCCTATAATAAAACCTAGTTATTCCTGAATAGGG
CCGGTGCCCGGTAAGTGCCGATCAAACCTCTGGGCATAAATGTCCACTCC
TGTACTAAATAAAACCTTACTTCCTGTTAAGTAATAGATATTCCTGTTCT
GAATAGGGCCGGTGCCCGATATAGTGTCGGTCAAACCTCTGGGCATGAAA
CTTTCATTCCTCTACTAAAGCCTATAGTTATCCCTTTCTGAAAAGTGCCG
GTGTCCGGTGTAGTGCTGTCGGTCAAACCTCTGGGTACTATAACGGGACG
CCTAATTGTACTGCTGGTTAGTGCGCGAAAACCCTCTTCGCTCTCACCAC
CGTGATAATCTCACAACATTTTCTCCCCTCCGCACTCCCCCGATCCCCGT
CAGGCTCGAGACGTAGACGAGTCGCGGTACATGTACGACCAGCTCGCGGT
GCTGAGCCCGGTGATGCTGGCTCTCACCGCGGCAACGCCGATCCTGAAGG
GCCGCCTGGTGGACACGGACGTGAGATGGGACACCATCGCCACTTCCGTT
GATGACCGCACGCCTGCCGAGCGGGGTTTGCTCGACGCCGACCCGGTGGG
TGTTTTCGATTCGGCGTCTCGTGGAGGCAATCAATTTCCTCTGCGCTAGC
GATGCGAAACGTTTTGTTTTTCTCGTGGCTTCTGCATCGCCGATTTGTTT
TTTCTGAAGAGAGGGAACATCCGGAGTTTCTTTCGTTTGGTTTTCTACAA
AAGAAGCGAATAAAACTCGTAGCTCATAGACACGTGCGTTTGATTTGCCG
TCTCGTGAGCGCAATCGCCCCAGGTTGCTTCGCATAGGCTTTGTTTTTTA
CGTCGGCTTCTGCATCACCAAATTCCTTTGTGATTTAGAATAAAACATCC
GAAGTTCTTCGTCATATTTTTAGAAACGAAACAAACTCGCTCTCTACCCA
TCGAAACGAGGGGAAAATTAGCGACGAATGCGGCTTCCGCATCACCACGT
GCATGTATACCAACGAATCTACGACCGCCGTCGGGTGATACGTTACGACC
GCACCTACTACTCTTTCGCTTCACACGCCACCGTTTCTGCATCCCATAGC
GGCTGTGTTAATCTCGGTTCTGTTGGTGCATCCGTCTCTCAGGCGGCGAA
GGAGGCGGCCAGGGACCCTAGCATGGTCGGTGACGGCGTGGCCCGGCTGT
ACAAGAGCCGGTACGACAGCATCTCCAGCTACCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11583:958..2792+

>mRNA_E-fasciculatus_F_contig11583.1265.1 ID=mRNA_E-fasciculatus_F_contig11583.1265.1|Name=mRNA_E-fasciculatus_F_contig11583.1265.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11583:958..2792+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATGCCATGGCCTTCGGCATGGGCTGCTGCTGTCTGCAGGTTACATT
TCAGATGGATGCCATGGCCTTCGGCATGGGCTGCTGCTGTCTGCAGGTTA
CATTTCAGGCTCGAGACGTAGACGAGTCGCGGTACATGTACGACCAGCTC
GCGGTGCTGAGCCCGGTGATGCTGGCTCTCACCGCGGCAACGCCGATCCT
GAAGGGCCGCCTGGTGGACACGGACGTGAGATGGGACACCATCGCCACTT
CCGTTGATGACCGCACGCCTGCCGAGCGGGGTTTGCTCGACGCCGACCCG
GCTCGAGACGTAGACGAGTCGCGGTACATGTACGACCAGCTCGCGGTGCT
GAGCCCGGTGATGCTGGCTCTCACCGCGGCAACGCCGATCCTGAAGGGCC
GCCTGGTGGACACGGACGTGAGATGGGACACCATCGCCACTTCCGTTGAT
GACCGCACGCCTGCCGAGCGGGGTTTGCTCGACGCCGACCCGGAGGCGGC
CAGGGACCCTAGCATGGTCGGTGACGGCGTGGCCCGGCTGTACAAGAGCC
GGTACGACAGCATCTCCAGCTACCTGGAGGCGGCCAGGGACCCTAGCATG
GTCGGTGACGGCGTGGCCCGGCTGTACAAGAGCCGGTACGACAGCATCTC
CAGCTACCTG
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