mRNA_E-fasciculatus_F_contig11579.1263.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11579.1263.1
Unique NamemRNA_E-fasciculatus_F_contig11579.1263.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11579.1263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11579contigE-fasciculatus_F_contig11579:2986..3714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927669.2544558-CDS-E-fasciculatus_F_contig11579:2985..30651622927669.2544558-CDS-E-fasciculatus_F_contig11579:2985..3065Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11579 2986..3065 +
1695995642.7411263-CDS-E-fasciculatus_F_contig11579:2985..30651695995642.7411263-CDS-E-fasciculatus_F_contig11579:2985..3065Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11579 2986..3065 +
1622927669.2674408-CDS-E-fasciculatus_F_contig11579:3516..37121622927669.2674408-CDS-E-fasciculatus_F_contig11579:3516..3712Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11579 3517..3712 +
1695995642.7491019-CDS-E-fasciculatus_F_contig11579:3516..37121695995642.7491019-CDS-E-fasciculatus_F_contig11579:3516..3712Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11579 3517..3712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11579.1263.1prot_E-fasciculatus_F_contig11579.1263.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11579 2986..3712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11579.1263.1

>prot_E-fasciculatus_F_contig11579.1263.1 ID=prot_E-fasciculatus_F_contig11579.1263.1|Name=mRNA_E-fasciculatus_F_contig11579.1263.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
CQGGGQAQGVLHARRQRRQRRPRRRHSPTAAAGAHHRPHPQRQNRHRHQH
QHQHQRPTVAAAMTGRRRKRLPTVAPPAPMREPGVGAATVAG
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mRNA from alignment at E-fasciculatus_F_contig11579:2986..3714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11579.1263.1 ID=mRNA_E-fasciculatus_F_contig11579.1263.1|Name=mRNA_E-fasciculatus_F_contig11579.1263.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=729bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11579:2986..3714+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTCAGGGCGGCGGTCAAGCACAAGGCGTTCTCCACGCTCGGCGGCAGCG
GCGGCAGCGGCGGCCGCGGCGGCGGCACAGGCAAGTCATGTTAGCGAGGG
CGGGGTGTGTGTGTGGAGGAGTAAATAAACACTTGGTATCTCAGCTACAC
ACCAGACGGCGGGGTTCGTTGGTCTCCCGCGTGGCCCGCCACATTTCGGT
TATCACTTCTGAACCGCCTTGTTATTGCATATCCAGAACGGAGAGAATGT
TTCTCTTGTTACAAGTCCCGTCTGTCTGCCCAGTGGGAGGAGCACGACCC
TTAAGAATAGCGAGGAAGAGAGAATAGGCTCAGCCTTTCGGCCATCAAGC
GATCGGTCGGTGTCTCTCCCTCTTCGTCCCGTTGAGCAAGCAGCGCGCGG
GTACGAGAAGAACCGCCGTCTAGCACACACTCCGCTAAGAAAAACTCATG
TTTACCGTCATCACGTTGACCGGCCCCCCTTACCCCCACCCCCGCCCACG
CCCTCTCTGCCCATCCCCCCCCGTACTCCAGCCCAACGGCGGCGGCGGGG
GCTCATCATCGTCCGCACCCTCAGCGGCAGAACCGGCACCGGCACCAACA
CCAACACCAGCACCAGCGGCCGACGGTAGCGGCGGCGATGACGGGGCGGA
GGAGGAAGAGGCTTCCAACGGTGGCTCCACCAGCCCCGATGCGGGAGCCG
GGAGTGGGAGCGGCGACGGTGGCGGGGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11579:2986..3714+

>mRNA_E-fasciculatus_F_contig11579.1263.1 ID=mRNA_E-fasciculatus_F_contig11579.1263.1|Name=mRNA_E-fasciculatus_F_contig11579.1263.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11579:2986..3714+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTCAGGGCGGCGGTCAAGCACAAGGCGTTCTCCACGCTCGGCGGCAGCG
GCGGCAGCGGCGGCCGCGGCGGCGGCACAGTGTCAGGGCGGCGGTCAAGC
ACAAGGCGTTCTCCACGCTCGGCGGCAGCGGCGGCAGCGGCGGCCGCGGC
GGCGGCACAGCCCAACGGCGGCGGCGGGGGCTCATCATCGTCCGCACCCT
CAGCGGCAGAACCGGCACCGGCACCAACACCAACACCAGCACCAGCGGCC
GACGGTAGCGGCGGCGATGACGGGGCGGAGGAGGAAGAGGCTTCCAACGG
TGGCTCCACCAGCCCCGATGCGGGAGCCGGGAGTGGGAGCGGCGACGGTG
GCGGGGCCCAACGGCGGCGGCGGGGGCTCATCATCGTCCGCACCCTCAGC
GGCAGAACCGGCACCGGCACCAACACCAACACCAGCACCAGCGGCCGACG
GTAGCGGCGGCGATGACGGGGCGGAGGAGGAAGAGGCTTCCAACGGTGGC
TCCACCAGCCCCGATGCGGGAGCCGGGAGTGGGAGCGGCGACGGTGGCGG
GG
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