mRNA_E-fasciculatus_F_contig11545.1237.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11545.1237.1
Unique NamemRNA_E-fasciculatus_F_contig11545.1237.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11545.1237.1 vs. uniprot
Match: D7G4D2_ECTSI (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D2_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 8.290e-21
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:   46 IDKPVGTLLLLFPCWWSIALAAPVGTLPDAKLMALFATGSVLMR 177
            IDKP GTLLLLFPCWWSIALAAP+GTLPDAKLMALFATGSVLMR
Sbjct:   15 IDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMR 58
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BLAST of mRNA_E-fasciculatus_F_contig11545.1237.1 vs. uniprot
Match: A0A6H5JSZ9_9PHAE (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.290e-20
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:   46 IDKPVGTLLLLFPCWWSIALAAPVGTLPDAKLMALFATGSVLMR 177
            IDKP GTLLLLFPCWWSIALAAP+GTLPDAKLMALFATGSVLMR
Sbjct:  152 IDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMR 195
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BLAST of mRNA_E-fasciculatus_F_contig11545.1237.1 vs. uniprot
Match: D7G4D3_ECTSI (4-hydroxybenzoate nonaprenyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.550e-18
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   46 IDKPVGTLLLLFPCWWSIALAAPVGTLPDAKLMALFATGSVLMR 177
            IDKP GTLLL+FPCWW +ALAAP+GTLPDAKLM  FA GS L+R
Sbjct:   15 IDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 58
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BLAST of mRNA_E-fasciculatus_F_contig11545.1237.1 vs. uniprot
Match: UPI001EFE17F9 (4-hydroxybenzoate octaprenyltransferase n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI001EFE17F9)

HSP 1 Score: 77.4 bits (189), Expect = 2.400e-15
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    4 WVRVGARTDAXXXXIDKPVGTLLLLFPCWWSIALAAPVGTLPDAKLMALFATGSVLMR 177
            W+    R  A    +D+P+GT LLLFPCWWSIALAAP G  PD +LMALFA G+V+MR
Sbjct:   27 WLPRAWRPYALLARLDRPIGTWLLLFPCWWSIALAAPAGHWPDLRLMALFALGAVVMR 84
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BLAST of mRNA_E-fasciculatus_F_contig11545.1237.1 vs. uniprot
Match: A0A835ZKZ5_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKZ5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.700e-15
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   46 IDKPVGTLLLLFPCWWSIALAAPVGTLPDAKLMALFATGSVLMR 177
            +DKP+GT+LLL+PCWWS ALAAP G LPD KL+ALF TG+ +MR
Sbjct:   18 VDKPIGTMLLLWPCWWSTALAAPAGALPDFKLLALFGTGAFVMR 61
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BLAST of mRNA_E-fasciculatus_F_contig11545.1237.1 vs. uniprot
Match: UPI001CEC92D4 (4-hydroxybenzoate octaprenyltransferase n=1 Tax=Indioceanicola profundi TaxID=2220096 RepID=UPI001CEC92D4)

HSP 1 Score: 74.3 bits (181), Expect = 3.320e-14
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    4 WVRVGARTDAXXXXIDKPVGTLLLLFPCWWSIALAAPVGTLPDAKLMALFATGSVLMR 177
            W+       A    +D+P+GT LLLFPCWWSIALA P G  PD  LMALFA G+V+MR
Sbjct:   32 WLPAALTPYARLARLDRPIGTWLLLFPCWWSIALATPAGQWPDLYLMALFAIGAVVMR 89
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BLAST of mRNA_E-fasciculatus_F_contig11545.1237.1 vs. uniprot
Match: UPI0006447C38 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006447C38)

HSP 1 Score: 73.2 bits (178), Expect = 1.070e-13
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   46 IDKPVGTLLLLFPCWWSIALAAPVGTLPDAKLMALFATGSVLMR 177
            +DKP+GTLLLL+PCW+S A AA  GTLPD KLM +FATG++LMR
Sbjct:  153 LDKPIGTLLLLYPCWFSTAFAAAPGTLPDIKLMVMFATGAILMR 196
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BLAST of mRNA_E-fasciculatus_F_contig11545.1237.1 vs. uniprot
Match: D8S6M3_SELML (Uncharacterized protein (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S6M3_SELML)

HSP 1 Score: 71.6 bits (174), Expect = 2.150e-13
Identity = 29/44 (65.91%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:   46 IDKPVGTLLLLFPCWWSIALAAPVGTLPDAKLMALFATGSVLMR 177
            +DKP+GT LL +PC+WSIALAAP G+LPD K++ALF TG++L+R
Sbjct:   22 LDKPIGTWLLAWPCFWSIALAAPAGSLPDLKMLALFGTGAILLR 65
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BLAST of mRNA_E-fasciculatus_F_contig11545.1237.1 vs. uniprot
Match: UPI001B8C5EBB (4-hydroxybenzoate octaprenyltransferase n=1 Tax=Magnetospirillum sp. J10 TaxID=611300 RepID=UPI001B8C5EBB)

HSP 1 Score: 71.6 bits (174), Expect = 2.330e-13
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    4 WVRVGARTDAXXXXIDKPVGTLLLLFPCWWSIALAAPVGTLPDAKLMALFATGSVLMR 177
            WV   AR       +D+P+GT LLLFPCWWS+ALAA  G  PD +LM LFA G+V+MR
Sbjct:   20 WVPAAARPYLRLMRLDRPIGTWLLLFPCWWSVALAADGG--PDLRLMTLFAIGAVIMR 75
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BLAST of mRNA_E-fasciculatus_F_contig11545.1237.1 vs. uniprot
Match: A0A1Y5E670_9PROT (4-hydroxybenzoate octaprenyltransferase n=1 Tax=Alphaproteobacteria bacterium 46_93_T64 TaxID=1856292 RepID=A0A1Y5E670_9PROT)

HSP 1 Score: 71.6 bits (174), Expect = 2.510e-13
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   46 IDKPVGTLLLLFPCWWSIALAAPVGTLPDAKLMALFATGSVLMR 177
            ID+P+GT LLL+PCWWSIALAAP G++PDA L  LFA G+ +MR
Sbjct:   39 IDRPIGTWLLLYPCWWSIALAAPAGSVPDAVLFILFAIGAFVMR 82
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11545.1237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4D2_ECTSI8.290e-2195.454-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A6H5JSZ9_9PHAE3.290e-2095.454-hydroxybenzoate polyprenyltransferase, mitochond... [more]
D7G4D3_ECTSI1.550e-1877.274-hydroxybenzoate nonaprenyltransferase n=1 Tax=Ec... [more]
UPI001EFE17F92.400e-1560.344-hydroxybenzoate octaprenyltransferase n=1 Tax=Ol... [more]
A0A835ZKZ5_9STRA5.700e-1570.454-hydroxybenzoate polyprenyltransferase, mitochond... [more]
UPI001CEC92D43.320e-1456.904-hydroxybenzoate octaprenyltransferase n=1 Tax=In... [more]
UPI0006447C381.070e-1370.45hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D8S6M3_SELML2.150e-1365.91Uncharacterized protein (Fragment) n=4 Tax=Selagin... [more]
UPI001B8C5EBB2.330e-1356.904-hydroxybenzoate octaprenyltransferase n=1 Tax=Ma... [more]
A0A1Y5E670_9PROT2.510e-1368.184-hydroxybenzoate octaprenyltransferase n=1 Tax=Al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11545contigE-fasciculatus_F_contig11545:786..965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog2880.D7G4D2
Preferred nameCOQ2
KEGG rclassRC00209,RC02895
KEGG koko:K06125,ko:K07964,ko:K13412
KEGG ReactionR05000,R05616,R07273,R07811
KEGG Pathwayko00130,ko00531,ko01100,ko01110,ko04626,ko05145,ko05205,map00130,map00531,map01100,map01110,map04626,map05145,map05205
KEGG ModuleM00078,M00128
GOsGO:0000428,GO:0002083,GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005975,GO:0006066,GO:0006071,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008412,GO:0009058,GO:0009059,GO:0009108,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009987,GO:0010259,GO:0010467,GO:0016020,GO:0016021,GO:0016070,GO:0016740,GO:0016765,GO:0018130,GO:0019400,GO:0019438,GO:0019748,GO:0019751,GO:0019866,GO:0030880,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032592,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0042180,GO:0042181,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044455,GO:0044464,GO:0044550,GO:0046483,GO:0048856,GO:0050829,GO:0050830,GO:0050832,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0098542,GO:0098573,GO:1900558,GO:1900560,GO:1900561,GO:1900563,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901661,GO:1901663,GO:1902494,GO:1990234
EggNOG free text desc.4-hydroxybenzoate decaprenyltransferase activity
EggNOG OGsCOG0382@1,KOG1381@2759
EC2.5.1.39,2.7.11.1,3.2.1.166
COG Functional cat.H
CAZyGH79
BiGG ReactioniMM904.YNR041C,iND750.YNR041C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01001,ko01006
Ec32 ortholog description4-hydroxybenzoate nonaprenyltransferase
Ec32 orthologEc-00_007360.1
Exons1
Model size181
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927666.633432-CDS-E-fasciculatus_F_contig11545:785..9651622927666.633432-CDS-E-fasciculatus_F_contig11545:785..965Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11545 786..965 -
1695995641.474496-CDS-E-fasciculatus_F_contig11545:785..9651695995641.474496-CDS-E-fasciculatus_F_contig11545:785..965Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11545 786..965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11545.1237.1prot_E-fasciculatus_F_contig11545.1237.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11545 786..965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11545.1237.1

>prot_E-fasciculatus_F_contig11545.1237.1 ID=prot_E-fasciculatus_F_contig11545.1237.1|Name=mRNA_E-fasciculatus_F_contig11545.1237.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=60bp
CWVRVGARTDAXXXXIDKPVGTLLLLFPCWWSIALAAPVGTLPDAKLMAL
FATGSVLMR*
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mRNA from alignment at E-fasciculatus_F_contig11545:786..965-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11545.1237.1 ID=mRNA_E-fasciculatus_F_contig11545.1237.1|Name=mRNA_E-fasciculatus_F_contig11545.1237.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=180bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11545:786..965- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCTGGGTCCGCGTTGGAGCCCGTACGGACGCCTGNNNNNNNNNNATCGA
CAAACCAGTAGGGACTTTGCTCTTGCTGTTCCCTTGCTGGTGGAGCATTG
CGCTGGCGGCGCCGGTGGGTACTCTCCCTGATGCGAAGCTGATGGCCCTG
TTCGCCACCGGATCTGTGTTGATGAGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11545:786..965-

>mRNA_E-fasciculatus_F_contig11545.1237.1 ID=mRNA_E-fasciculatus_F_contig11545.1237.1|Name=mRNA_E-fasciculatus_F_contig11545.1237.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=360bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11545:786..965- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCTGGGTCCGCGTTGGAGCCCGTACGGACGCCTGNNNNNNNNNNATCGA
CAAACCAGTAGGGACTTTGCTCTTGCTGTTCCCTTGCTGGTGGAGCATTG
CGCTGGCGGCGCCGGTGGGTACTCTCCCTGATGCGAAGCTGATGGCCCTG
TTCGCCACCGGATCTGTGTTGATGAGGTGATGCTGGGTCCGCGTTGGAGC
CCGTACGGACGCCTGNNNNNNNNNNATCGACAAACCAGTAGGGACTTTGC
TCTTGCTGTTCCCTTGCTGGTGGAGCATTGCGCTGGCGGCGCCGGTGGGT
ACTCTCCCTGATGCGAAGCTGATGGCCCTGTTCGCCACCGGATCTGTGTT
GATGAGGTGA
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