mRNA_E-fasciculatus_F_contig11521.1225.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11521.1225.1
Unique NamemRNA_E-fasciculatus_F_contig11521.1225.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11521.1225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11521contigE-fasciculatus_F_contig11521:2699..4377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927665.1230423-CDS-E-fasciculatus_F_contig11521:2698..27631622927665.1230423-CDS-E-fasciculatus_F_contig11521:2698..2763Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11521 2699..2763 +
1695995640.6744137-CDS-E-fasciculatus_F_contig11521:2698..27631695995640.6744137-CDS-E-fasciculatus_F_contig11521:2698..2763Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11521 2699..2763 +
1622927665.1449754-CDS-E-fasciculatus_F_contig11521:4039..43761622927665.1449754-CDS-E-fasciculatus_F_contig11521:4039..4376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11521 4040..4376 +
1695995640.685928-CDS-E-fasciculatus_F_contig11521:4039..43761695995640.685928-CDS-E-fasciculatus_F_contig11521:4039..4376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11521 4040..4376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11521.1225.1prot_E-fasciculatus_F_contig11521.1225.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11521 2699..4376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11521.1225.1

>prot_E-fasciculatus_F_contig11521.1225.1 ID=prot_E-fasciculatus_F_contig11521.1225.1|Name=mRNA_E-fasciculatus_F_contig11521.1225.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=134bp
SERRTTNKQRCPVTGEAVGGRRVRTATGSAAAPPPPPARSPGSRHGTPSD
APGAALAAGVVALAAKTTTTLPPAWLRDRPSLPQATSSSTTYGTTSSPRI
CVPPRRGGAVKTTAWSCSSCAASGVFLRAGSVRG
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mRNA from alignment at E-fasciculatus_F_contig11521:2699..4377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11521.1225.1 ID=mRNA_E-fasciculatus_F_contig11521.1225.1|Name=mRNA_E-fasciculatus_F_contig11521.1225.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1679bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11521:2699..4377+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTGAGCGAAGAACGACCAACAAACAACGATGTCCGGTGACCGGGGAAGC
AGTGGGGGGAAGAAGGTGGGCCCTTCGGATACAGAACAACAGCAGTAACA
GCAGTAGTAGTGCAGCCTGAAAGTTGGCTACAGATAGGGTAAGTAGATCG
GGGACGTTAGGTTAGATACCACACCCCCTTGACCGATTTTCAAAGCTCGA
CTACAGTACTAATACTCCACGACGAAGCAAGAGCAACCATCAACTGTACT
GCTGTATACTTTCGGAAAGCTCTCGACGAGACGAGATGGCTCCACTGCCG
CCATGCTTCGGCACCGTTACGGGTTGTGCGGCAGGGAGTTAATCGAGCAT
TGAAAATTGAAAGTCGGGCCACAGGGGGTGTGATATCTTACCCCATCTAA
CGGTACTTCACACACTTCACAGCACAGCCAACAAGACCACAAACTCGAAG
GCACACATGTTCAGCACCTCTAGGACTCTTGTGTGCCATCGTTTTGTGCT
CTCGTTTTGTGCGGCGCAGCCAGTACTACCGCTGTAGCACTTGATGCAAT
CCCTCGTCGGCACGGGAGCTACACCACGTATGTAGCGTACCGCAGTACTG
CTGCTGTCGTGCAGCCCACCTAGTCGACCTGCAATCGACCCAACCTTTCT
GCTTTTACGTGTCTCCCCTGCGCAGCAGCAGTCGAACCCCCACCTTGTTG
GTCCAAAGTGCATCCCTAGAGCACCAGCACTGGTATGTAGGAGTGCTGTA
TTTTGCTAAAGGCTCTTTCCCGGCTCACCCACCCACCGGGCCACTTGAAG
GCGCGTAAGCACGGACCCTCGGTCGTTGCGGTTGTCGTCGTCGTCGTCGT
CGTCGTCGTCGATATTTTGGTTGGTGGTATTGACATTGGTGTTGCTGTCT
CTGAGCATGGTGCTGTTGTTGGTAGCCGTCCTCGTTGGTGTGATGGTTGG
TCGCTGGTGCTGGTGCTGGTGCTTGTGCTGTCGGTACTACTGGTAACGGC
GCGTAGTTGCTCTCAAGTGTTGTACTTTAACCGTATTTACGCGTATTTCT
GAACGACCGTGCCCACCCGTTTAAGCATGCTTTCCGGACGTATGAACCAG
GGGGATGCCACACAGGACGTTCCACCGCCGCTGGATAGTGCCGGCTCAGC
ACCCACTGCTGCTTTTGTCAAGCTTTGAAAAGTGCCTTCTCATCTCTCCC
GAGCATGCCGCTAGAGGACACCCAGGCCCCCTTTTTTTTAAAGAAAAATA
CAAGTACAAACACCGAAAGAGGCCCCCTTTTTTTTGTTTTGATCGCCTTT
CTCACGCGTTAACAAACCCCTCTTACTCCGGCCATCTACAGGGTACGCAC
GGCCACCGGAAGCGCAGCCGCACCCCCTCCTCCTCCGGCTCGGAGCCCCG
GATCGCGCCACGGAACCCCTTCGGACGCACCCGGGGCGGCACTAGCAGCA
GGAGTAGTAGCGCTCGCAGCAAAAACAACGACGACACTCCCCCCGGCGTG
GCTTCGCGATCGTCCCTCGCTGCCACAAGCGACGAGTTCCTCGACGACGT
ACGGTACGACGTCGTCCCCAAGGATATGTGTGCCGCCACGCAGGGGGGGG
GCGGTCAAGACGACAGCGTGGTCTTGCAGCAGCTGTGCAGCCTCGGGAGT
GTTCTTGCGGGCGGGAAGTGTGAGGGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11521:2699..4377+

>mRNA_E-fasciculatus_F_contig11521.1225.1 ID=mRNA_E-fasciculatus_F_contig11521.1225.1|Name=mRNA_E-fasciculatus_F_contig11521.1225.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=804bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11521:2699..4377+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTGAGCGAAGAACGACCAACAAACAACGATGTCCGGTGACCGGGGAAGC
AGTGGGGGGAAGAAGAGTGAGCGAAGAACGACCAACAAACAACGATGTCC
GGTGACCGGGGAAGCAGTGGGGGGAAGAAGGGTACGCACGGCCACCGGAA
GCGCAGCCGCACCCCCTCCTCCTCCGGCTCGGAGCCCCGGATCGCGCCAC
GGAACCCCTTCGGACGCACCCGGGGCGGCACTAGCAGCAGGAGTAGTAGC
GCTCGCAGCAAAAACAACGACGACACTCCCCCCGGCGTGGCTTCGCGATC
GTCCCTCGCTGCCACAAGCGACGAGTTCCTCGACGACGTACGGTACGACG
TCGTCCCCAAGGATATGTGTGCCGCCACGCAGGGGGGGGGCGGTCAAGAC
GACAGCGTGGTCTTGCAGCAGCTGTGCAGCCTCGGGAGTGTTCTTGCGGG
CGGGAAGTGTGAGGGGGGGTACGCACGGCCACCGGAAGCGCAGCCGCACC
CCCTCCTCCTCCGGCTCGGAGCCCCGGATCGCGCCACGGAACCCCTTCGG
ACGCACCCGGGGCGGCACTAGCAGCAGGAGTAGTAGCGCTCGCAGCAAAA
ACAACGACGACACTCCCCCCGGCGTGGCTTCGCGATCGTCCCTCGCTGCC
ACAAGCGACGAGTTCCTCGACGACGTACGGTACGACGTCGTCCCCAAGGA
TATGTGTGCCGCCACGCAGGGGGGGGGCGGTCAAGACGACAGCGTGGTCT
TGCAGCAGCTGTGCAGCCTCGGGAGTGTTCTTGCGGGCGGGAAGTGTGAG
GGGG
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