mRNA_E-fasciculatus_F_contig115.1208.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig115.1208.1
Unique NamemRNA_E-fasciculatus_F_contig115.1208.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig115.1208.1 vs. uniprot
Match: D8LU74_ECTSI (NUDIX hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU74_ECTSI)

HSP 1 Score: 533 bits (1372), Expect = 6.750e-189
Identity = 278/331 (83.99%), Postives = 284/331 (85.80%), Query Frame = 1 
Query:    1 MISSAMSSASLIGRPVHVAANRLRTTSXXXXXXXXXXXXXXXXTALPSFEYKVQSTEDPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDEVISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRPIISSSSGPSLGAGEGTRRGFSGGDTAVSAMAKAVAEDDRVVGTRTDHSVPGISDTRGGTGVGVAFGAIAGTVFSVPSANSSLFWRPDVGLHQKEGWNVSTDS 993
            MISSA SSA LIGR V VAA RLRT++                   PSFEYKVQST+DPK RKTC TCGFVNYENPKVICGSVLTAKGG  ADG D FYVLGRR+IQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGAN  L DNA SFSAGQETDEV  VRWEDIPWDTLAFPTTSWALWHHRLRVEEAATR II SSSG  LG GEGTRRGFSGGDTAVSA AKAV +DDRVVGTRTDHS PG+SDT G TGVGVAFGAIAGTVFSVPS NSSLFWRPDVGLHQKEGWNVSTDS
Sbjct:    1 MISSARSSAVLIGRRVQVAAKRLRTSTAAAARPS------------PSFEYKVQSTDDPKPRKTCTTCGFVNYENPKVICGSVLTAKGG--ADGKDDFYVLGRRSIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANDTLADNAHSFSAGQETDEVFGVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRSIIGSSSGAPLGTGEGTRRGFSGGDTAVSAGAKAVVDDDRVVGTRTDHSEPGVSDTMG-TGVGVAFGAIAGTVFSVPSVNSSLFWRPDVGLHQKEGWNVSTDS 316
[Close]
BLAST of mRNA_E-fasciculatus_F_contig115.1208.1 vs. uniprot
Match: A0A6H5JUS4_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS4_9PHAE)

HSP 1 Score: 442 bits (1138), Expect = 5.020e-154
Identity = 225/261 (86.21%), Postives = 235/261 (90.04%), Query Frame = 1 
Query:  220 ENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDE---VISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRPIISSSSGPSLGAGEGTRRGFSGGDTAVSAMAKAVAEDDRVVGTRTDHSVPGISDTRGGTGVGVAFGAIAGTVFSVPSANSSLFWRPDVGLHQKEGWNVSTDS 993
            ENPKVICGSVLTAKGG  ADG D FYVLGRR+IQPRRG WGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQM+YSSEL+DTQGAN  L +NA SFSAGQETDE   VISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATR  I SSSG  LG GEG +RGFSGGDTA+SA+AKAV +DDRVVGT+TDH  PG+SDT G TGVGVAFGAIAGTVFSVPS NSSLFWRPDVGLHQKEGWN STDS
Sbjct:   12 ENPKVICGSVLTAKGG--ADGTDDFYVLGRRSIQPRRGLWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMMYSSELRDTQGANDILANNAHSFSAGQETDEASAVISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRSTIGSSSGAPLGTGEGRKRGFSGGDTAISAVAKAVGDDDRVVGTKTDHCEPGVSDTIG-TGVGVAFGAIAGTVFSVPSVNSSLFWRPDVGLHQKEGWNASTDS 269
[Close]
BLAST of mRNA_E-fasciculatus_F_contig115.1208.1 vs. uniprot
Match: A0A7Y3RKT5_9PROT (NUDIX hydrolase n=1 Tax=Parvularcula mediterranea TaxID=2732508 RepID=A0A7Y3RKT5_9PROT)

HSP 1 Score: 168 bits (426), Expect = 1.230e-47
Identity = 84/190 (44.21%), Postives = 122/190 (64.21%), Query Frame = 1 
Query:  139 PSFEYKVQSTEDPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDEVISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRPIISSSSG 708
            PSF+ +V   +D + RK C  CGF++Y+NPK++CGSV T+         DG  +L +R I+PR+GFW +PAG++ELGE+ E+GA REAREE  A++ +  +LAVYS+P IGQ+Q+++ +EL + +G             AG E+++V  V WEDIPW  LAFPT  WAL HHR  + +    P  + + G
Sbjct:    9 PSFQKEVPDGDDRE-RKVCTRCGFIDYQNPKIVCGSVATSP--------DGRILLCKRAIEPRKGFWTLPAGYMELGESVEDGARREAREEALAELKLDRILAVYSIPRIGQVQIMFRAELLNPEGVG-----------AGPESEDVKLVTWEDIPWTELAFPTVYWALRHHREVMGQEVFPPFSNPADG 178
[Close]
BLAST of mRNA_E-fasciculatus_F_contig115.1208.1 vs. uniprot
Match: A7HSZ7_PARL1 (NUDIX hydrolase n=2 Tax=Parvibaculum lavamentivorans TaxID=256618 RepID=A7HSZ7_PARL1)

HSP 1 Score: 162 bits (410), Expect = 8.090e-45
Identity = 81/185 (43.78%), Postives = 119/185 (64.32%), Query Frame = 1 
Query:  142 SFEYKVQSTEDPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDEVISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRPIIS 696
            +F  +V S ++ + R  C  CGF+NY NP+++ GSV+T         +DG ++L RR I+PRRG+W +PAGF+E GET +EGA REAREE NA++ +  +LA+Y++P I Q+Q++Y +EL++             SFSAG+ET E     W+DIPW+ LAFP+  WAL HHR  + + A  P  +
Sbjct:   34 AFSRRVPSGDNLE-RDICDRCGFINYVNPRIVVGSVVT---------HDGKFLLCRRAIEPRRGYWTLPAGFMEQGETTDEGARREAREEANAEIVLRDVLAIYNIPRIAQVQIMYRAELREP------------SFSAGEETLEAGLFEWKDIPWEELAFPSVYWALMHHREAMGKDAIAPFTN 196
[Close]
BLAST of mRNA_E-fasciculatus_F_contig115.1208.1 vs. uniprot
Match: A0A4P6UXA2_9HYPH (NUDIX domain-containing protein n=2 Tax=Roseitalea porphyridii TaxID=1852022 RepID=A0A4P6UXA2_9HYPH)

HSP 1 Score: 159 bits (402), Expect = 4.090e-44
Identity = 85/177 (48.02%), Postives = 106/177 (59.89%), Query Frame = 1 
Query:  172 DPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDEVISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRPIISSS 702
            D   R  C  CGFV YENPK++ GSV+T         + G  +L RR I+PRRG+W +PAG+LELGET EEGAAREAREE NA + + GLL+VY++  + Q+Q+IY + L D              FSAG+ET E +   W DIPWD LAFPT  W L H R      AT P  + S
Sbjct:   17 DTHHRDVCDRCGFVAYENPKIVVGSVVT---------HAGKVLLCRRAIEPRRGYWTVPAGYLELGETPEEGAAREAREEANASLTLHGLLSVYTVRRLSQVQLIYRASLTDGL------------FSAGEETLEAVLFDWRDIPWDDLAFPTVHWMLQHQRAFEAGDATPPFGNPS 172
[Close]
BLAST of mRNA_E-fasciculatus_F_contig115.1208.1 vs. uniprot
Match: A0A520NSW3_9PROT (NUDIX domain-containing protein n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NSW3_9PROT)

HSP 1 Score: 158 bits (400), Expect = 9.750e-44
Identity = 79/162 (48.77%), Postives = 101/162 (62.35%), Query Frame = 1 
Query:  172 DPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDEVISVRWEDIPWDTLAFPTTSWALWHHR 657
            D + R TC  CGF+NYENPK++ G+V T          D   +L RR I PRRGFW IPAGF+EL ET E G  REA+EE  AD+D+ GL+ VY++P I Q+Q+IY + +KD              F+AG ET+E+    W+DIPWD LAFP+  WAL H R
Sbjct:   19 DNRERLTCPDCGFINYENPKIVVGAVCTW---------DSRLLLCRRAIDPRRGFWTIPAGFMELNETAEAGTRREAKEEACADIDIDGLIGVYTIPRISQVQLIYRATVKDGV------------FAAGDETEELDLFGWDDIPWDDLAFPSVKWALDHWR 159
[Close]
BLAST of mRNA_E-fasciculatus_F_contig115.1208.1 vs. uniprot
Match: UPI001F38B021 (NUDIX hydrolase n=1 Tax=Aurantimonas sp. HBX-1 TaxID=2906072 RepID=UPI001F38B021)

HSP 1 Score: 158 bits (400), Expect = 1.170e-43
Identity = 91/204 (44.61%), Postives = 116/204 (56.86%), Query Frame = 1 
Query:  139 PSFEYKVQSTEDPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDEVISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRPIIS--SSSGPSLGAGEGTRRG 744
            PSF  +    +D   RK C  CGFV YENPK++ GSV+          +DG  +L RR I+PRRGFW IPAG+LEL ET EEGA REAREE  A +D+  LLAVYS+P I Q+Q+IY + L +             S +AG E+  V    W+DIPW  LAFP+  WAL H R   E A   P  +   +SG ++  G   + G
Sbjct:    4 PSFSLRAPEDDDLP-RKICDNCGFVAYENPKIVVGSVVR---------HDGRILLCRRAIEPRRGFWTIPAGYLELNETPEEGARREAREEATAVLDIERLLAVYSVPRISQVQLIYRARLAEP------------SIAAGPESLSVDLFAWDDIPWQDLAFPSVHWALAHERAAAEGAPPVPFSNPKGASGDTMPDGRSLKLG 185
[Close]
BLAST of mRNA_E-fasciculatus_F_contig115.1208.1 vs. uniprot
Match: UPI000DF1FA97 (NUDIX hydrolase n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI000DF1FA97)

HSP 1 Score: 158 bits (399), Expect = 1.370e-43
Identity = 82/176 (46.59%), Postives = 111/176 (63.07%), Query Frame = 1 
Query:  184 RKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDEVISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRPIISSSSGP 711
            R  C  CG++ YENPK+I GSV+T     +ADG     ++ RR I+PRRGFW +PAG++ELGE+ EEGAAREA EE  A + +  LLAVYSLP I Q+Q+IY + L             A + +AG E+ EV    WE+IPW +LAFP+ +WAL  HR R+ ++A  P ++    P
Sbjct:   23 RLVCPDCGYIAYENPKIIVGSVVT-----DADGR---ILMCRRAIEPRRGFWTLPAGYMELGESCEEGAAREAWEEARAQIAIDALLAVYSLPRIDQVQLIYRARL------------TAPTVAAGPESLEVALFAWEEIPWSSLAFPSVAWALNDHRARLGQSAFAPAVAPPEPP 178
[Close]
BLAST of mRNA_E-fasciculatus_F_contig115.1208.1 vs. uniprot
Match: A0A6L9MI79_9HYPH (NUDIX domain-containing protein n=2 Tax=Aurantimonas TaxID=182269 RepID=A0A6L9MI79_9HYPH)

HSP 1 Score: 158 bits (399), Expect = 1.650e-43
Identity = 88/184 (47.83%), Postives = 107/184 (58.15%), Query Frame = 1 
Query:  139 PSFEYKVQSTEDPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDEVISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRPI 690
            PSF  ++   +D   RK C  CGFV YENPK++ GSV+          ++G  +L RR I+PR GFW IPAG+LEL ET EEGA REAREE  A + +  LLAVYS+P I Q+Q+IY + L                FSAG E+ EV    W+DIPWD LAFPT  WAL H R     A T P 
Sbjct:    4 PSFSLRLPEGDDLP-RKVCDNCGFVAYENPKIVVGSVVR---------HEGRILLCRRAIEPRSGFWTIPAGYLELNETPEEGARREAREEATATLAIERLLAVYSVPRISQVQLIYRARLA------------VPEFSAGPESLEVALFDWDDIPWDDLAFPTVHWALAHDREAETGATTVPF 165
[Close]
BLAST of mRNA_E-fasciculatus_F_contig115.1208.1 vs. uniprot
Match: A0A2D8G551_9PROT (NUDIX hydrolase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G551_9PROT)

HSP 1 Score: 157 bits (397), Expect = 2.720e-43
Identity = 81/181 (44.75%), Postives = 111/181 (61.33%), Query Frame = 1 
Query:  172 DPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDEVISVRWEDIPWDTLAFPTTSWAL--WHHRLRVEEAATRPIISSSSG 708
            D + R TC  CGF+NYENPK++ G+V T          +G  +L RR I+PRRGFW IPAG++EL ET E GAAREA+EE  AD+D+ GL+ VY++P I Q+Q+IY + L+               F+AG ET+E+    W+ IPW+ LAFP+ +W+L  WH    + EA   P  S+  G
Sbjct:   19 DNRERLTCPDCGFINYENPKIVVGAVCTW---------EGKLLLCRRAIEPRRGFWTIPAGYMELNETAEAGAAREAKEEACADIDIDGLIGVYTIPRISQVQLIYRAVLRGGY------------FAAGDETEELDLFDWDKIPWEDLAFPSVNWSLCHWHE---IAEAKVWPPFSNPPG 175
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig115.1208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU74_ECTSI6.750e-18983.99NUDIX hydrolase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JUS4_9PHAE5.020e-15486.21Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7Y3RKT5_9PROT1.230e-4744.21NUDIX hydrolase n=1 Tax=Parvularcula mediterranea ... [more]
A7HSZ7_PARL18.090e-4543.78NUDIX hydrolase n=2 Tax=Parvibaculum lavamentivora... [more]
A0A4P6UXA2_9HYPH4.090e-4448.02NUDIX domain-containing protein n=2 Tax=Roseitalea... [more]
A0A520NSW3_9PROT9.750e-4448.77NUDIX domain-containing protein n=2 Tax=Rhodospiri... [more]
UPI001F38B0211.170e-4344.61NUDIX hydrolase n=1 Tax=Aurantimonas sp. HBX-1 Tax... [more]
UPI000DF1FA971.370e-4346.59NUDIX hydrolase n=1 Tax=Oleisolibacter albus TaxID... [more]
A0A6L9MI79_9HYPH1.650e-4347.83NUDIX domain-containing protein n=2 Tax=Aurantimon... [more]
A0A2D8G551_9PROT2.720e-4344.75NUDIX hydrolase n=1 Tax=Alphaproteobacteria bacter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig115contigE-fasciculatus_F_contig115:5558..10935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score535.0
Seed ortholog evalue2.4e-149
Seed eggNOG ortholog2880.D8LU74
KEGG rclassRC00002
KEGG koko:K18453
KEGG ReactionR00160,R01054
KEGG Pathwayko00230,ko00740,ko01100,map00230,map00740,map01100
GOsGO:0000041,GO:0003674,GO:0003824,GO:0004551,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008152,GO:0008324,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009624,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0015075,GO:0015318,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0022857,GO:0022890,GO:0030001,GO:0032879,GO:0034220,GO:0034641,GO:0042221,GO:0042592,GO:0042726,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046873,GO:0046915,GO:0047884,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0061088,GO:0065007,GO:0065008,GO:0070838,GO:0071577,GO:0071704,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901360,GO:1901564
EggNOG free text desc.NAD diphosphatase activity
EggNOG OGsCOG2816@1,KOG3084@2759
EC3.6.1.13,3.6.1.18
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-16_000490.1
Exons5
Model size1083
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig115.1208.1prot_E-fasciculatus_F_contig115.1208.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig115 5558..10848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927662.5539896-CDS-E-fasciculatus_F_contig115:5557..57741622927662.5539896-CDS-E-fasciculatus_F_contig115:5557..5774Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig115 5558..5774 +
1695995639.325815-CDS-E-fasciculatus_F_contig115:5557..57741695995639.325815-CDS-E-fasciculatus_F_contig115:5557..5774Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig115 5558..5774 +
1622927662.5690196-CDS-E-fasciculatus_F_contig115:8765..89001622927662.5690196-CDS-E-fasciculatus_F_contig115:8765..8900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig115 8766..8900 +
1695995639.341487-CDS-E-fasciculatus_F_contig115:8765..89001695995639.341487-CDS-E-fasciculatus_F_contig115:8765..8900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig115 8766..8900 +
1622927662.5815833-CDS-E-fasciculatus_F_contig115:9278..94021622927662.5815833-CDS-E-fasciculatus_F_contig115:9278..9402Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig115 9279..9402 +
1695995639.3526936-CDS-E-fasciculatus_F_contig115:9278..94021695995639.3526936-CDS-E-fasciculatus_F_contig115:9278..9402Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig115 9279..9402 +
1622927662.5952754-CDS-E-fasciculatus_F_contig115:9818..99181622927662.5952754-CDS-E-fasciculatus_F_contig115:9818..9918Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig115 9819..9918 +
1695995639.3621614-CDS-E-fasciculatus_F_contig115:9818..99181695995639.3621614-CDS-E-fasciculatus_F_contig115:9818..9918Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig115 9819..9918 +
1622927662.6120157-CDS-E-fasciculatus_F_contig115:10428..108481622927662.6120157-CDS-E-fasciculatus_F_contig115:10428..10848Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig115 10429..10848 +
1695995639.369827-CDS-E-fasciculatus_F_contig115:10428..108481695995639.369827-CDS-E-fasciculatus_F_contig115:10428..10848Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig115 10429..10848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927662.6292613-UTR-E-fasciculatus_F_contig115:10848..109351622927662.6292613-UTR-E-fasciculatus_F_contig115:10848..10935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig115 10849..10935 +
1695995639.3778067-UTR-E-fasciculatus_F_contig115:10848..109351695995639.3778067-UTR-E-fasciculatus_F_contig115:10848..10935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig115 10849..10935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig115.1208.1

>prot_E-fasciculatus_F_contig115.1208.1 ID=prot_E-fasciculatus_F_contig115.1208.1|Name=mRNA_E-fasciculatus_F_contig115.1208.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=332bp
MISSAMSSASLIGRPVHVAANRLRTTSTATAAAAAAAATAAAATALPSFE
YKVQSTEDPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYV
LGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAV
YSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDEVISVRWED
IPWDTLAFPTTSWALWHHRLRVEEAATRPIISSSSGPSLGAGEGTRRGFS
GGDTAVSAMAKAVAEDDRVVGTRTDHSVPGISDTRGGTGVGVAFGAIAGT
VFSVPSANSSLFWRPDVGLHQKEGWNVSTDS*
back to top

mRNA from alignment at E-fasciculatus_F_contig115:5558..10935+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig115.1208.1 ID=mRNA_E-fasciculatus_F_contig115.1208.1|Name=mRNA_E-fasciculatus_F_contig115.1208.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5378bp|location=Sequence derived from alignment at E-fasciculatus_F_contig115:5558..10935+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATATCTTCAGCAATGTCATCGGCCTCGCTGATTGGGCGACCGGTACA
TGTAGCCGCGAACAGGTTGCGAACAACATCAACCGCAACAGCAGCAGCAG
CAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCACTACCTTCGTTCGAG
TACAAGGTGCAGTCGACCGAAGATCCCAAGCTCAGAAAGACGTGCGCCAC
TTGTGGGTTTGTCAACTGTGAGTCAAGTATCTAGTAAACCAACTGCTGCC
TGGTACACTTCTTTGGAGCCTACAATACAGCAGTGTAGGCCACAAGGGAG
ATGTAGATCTGTCTGCTCTTTTGTTTTCTCGGCATAGACTATATATATTT
GTTCATGGCTTGATGGACTTGCGTGGTGTGGCTTACCGCAATGAGTGCAG
CTGATCACACGCCATCACCACACGCAGATCTCGTCCAGAGGCAAAGAGGC
TTTTCCTTGCACGTATCGGTCGTTTTGTCGTACCGTACCCTCGGTTGTGG
AGCAATCGACTTCCTTCCTCTGTTGAAAGACCACTGTACTCATGCAGGGA
TGATCCTGGCGTCCTGTCTCGAGCCCATTACACTTTGTCTCGAATTCATG
TGTAACTTCGACGGGTAGGCAACGGTCGTTATGGCCTATGCACGAGGACC
GTTGCCGTTGCCCGATAACCATGGCAGTCCACGCTATGTAGAATGTCTGT
TGGGCGCTGGGCATGTGCGATACTGCTGTCACCGACGGATTTTACCGTCT
ACAACAATAGACTTTAAAGTCAAATTATGCACACGGTTTATAGTCGAAGA
AAGCAGTGTCATCGTCAGGGACGTTCCCATGGAATGTTATGTGAGAACCG
ACCAATGAAAGTGAGCGCCGTGACAAGGTAAAGCGTTCGCACGGGAGCAG
CTTCTCTTGGACGGATCTCCGGAAATCGATCTTGTTGCCCCCCCATAAAC
CAACACTCGGCCCTAATACCACCACCTAGGTTGCTTCTCACAGTTTCGCA
AGTCTGCTCACCGCAGCCTATCGTTTAGGTTTGCCTCCAGCTGGGAGCAC
CCTACGGGACACCATCTTTGTTCATGGAACCTGTTGGGTCATCGGAGGCA
AAGCACTTCGGTGTGAGGCCTTGCCACCCGAACCACACCAGACCTTCGCG
TCGGCCACTTTGTCCCAACATTGCCTCTTTCTGAAGCCCCTGTGTGTTGC
CTCTGAGATTCCCACGCGCGACGTGAGGAGCGTGGCCCCAAGTTCGTGGG
CTGCGCTTGCTTCGGGGGAGCTGTGGGCATAGTGGCGTCTCTCTCGCTTT
CTCTGGTCTCTGGTTCGGCTGCGTCCTTCACCTGAAATCGGACGTGCACG
AAAGCGACCTTTGGACAGGCGGATATTGACCTGCGAGACCTTGCGCATAT
AGCGTCCAGCTGCTTCGAGCGAGTGAATCACCCAACGTACGCACTCCTAC
GGCATGTGCCAGCATGTGAAGGATTCGCAGCACCCGAGGGGGCGCGTCCA
CGAAGTTTGTCATGAACCTTTATTTTTCAACAATCAAAAGTATTGTTAAC
ACCCAAATTGGTACCACGCACGATAATCCCAAGGCTTTTTCGTACCGACC
TGCCGAACACATCCTCTCCCGAGCCAATGAAAGAAATACTTCACTACCAA
GCGGTTGCTCTACGCGTCTGAGTTGACTCGAGGCTGAAGGGTATGTGAGT
GCTGTATCGCCACCGGGAAAGCTCGCAACGCCTGTTCCTGGCCCAGCATT
AGTCTAGTCATTCCCGATTATTCCCAGGCGGTTTAAACGAGGGGCTCCGA
TACGAGGGCACACGGAAGGGATACTCTCCGGTTCATCACCTTCACCTGGT
ACATAAGACGGGCTTCGCTGTTGTATCCCTCAAGAGAACCCACGAATAGG
TTATTTCTACGGGTTTGTTTTCCGAAAGGGAGAAAAGATCACCCTTTGCG
AAGACCCGGAGCTCGCGACCTGCCAAACTACTTGGTTTCGCACAGCCCGC
ACCTCTGTACAACGTCGCACTGAGTTATTGTTATCTCGGGAGCGATATTT
GGATCGCAACCTTGTTCGCACGATGTGGCAGACACACTTCGGCGTTGTGG
GCATCAGTCATGTGGGATCCTAAGCCTGCAGGGCGCCGCCCCGTGGGACT
ACCCTACCGCATCTCTTGCACAGAACTGCTTGTGCTATAGAGCTCCTATA
GCGATGTTCACCGATAGTTTGACGTCATCTCGATGTGGTTACCGAGGAAT
TGGAGTTGCCCTTTCCCCGTGAGTACGTCGTCCGTTCTATAGCCGTACAG
CCCGAGCCCTTCTTGGCATGCGCGTCGGTGGATAGGCAACCGCTGCCCGC
TAGGTCTCAACCCGTGAAATTGACCATTGTCAGCTAATCATTTGTGACCG
TCTCGCACACAATTGTCAACCGAGCCTATATGTTCCTTTCGTTCTCTCTT
TCTTTCTCCGCTTCCTTGGCGTGCAGTAGGAGTTACGAGGTCTGTCGGCA
AGTACACCCGTGGTTGCTTTGGTTCATGTGTGTACGAGGCGAATGGGTAA
AACGCGAATTAGCTGCTCTGTGGCATTCCGGGATGGTCTCTTCATTCTTT
ATGTGATAGCCCCTGCTGTATGCATGCGCCCTGCTCGACTATGATAGAGG
GCACGACGCGTAGCCAAAGTGATCCATTACTGCTTGCTGTGCAATTTCCA
CCAAGGATAATAAACAAACACTTGGGCTGGTGGCGTCGTTCCCAGATCGT
GGACAGCACACGTAGGTATCCCGACGACCGCTACTGATCGCAGTAAGCTG
CACATTTGTTCACTGTCGCATTCTGCCGGCCCACATTGTGCCTCACCTCC
CTTGCACAGCCTCATTCTATTGTTGATAAGGCATAGGCTCCTGGAAAAAT
GCGGTCCCGCAACAACAATAGGCAGATGGCGCCTTGCCTTCCTTTCTCGG
CATGAGGCCGGGCAGGTGGTGCGTGATAGCTCCTCGCCCATGCCGCACCC
TGCTGCAGCAACGTACCACTCCTGTCTTACACCATCCGCGGGCCCCCCGC
ATCCGCTCGAGGTGACGATCACAACCGCCTGGCTTCATGTGCCTACTATG
CCGGTCCTATCCCATCGGACCCCCGGTGACCTTGGCTTCGACGCAACCAC
TTGTATTGTGAAGTATGACAAAATGCATGCGATGATACGCTGCGCTGAAC
GGGGGCAGACGAAAACCCTAAGGTCATATGCGGCTCGGTGCTTACTGCGA
AGGGAGGTGAAGAGGCCGACGGAAACGACGGCTTTTATGTACTTGGCCGC
CGCAACATACAGCCACGACGAGGCTTTTGGGGCATACCTGCAGGTGCGAT
GAAGTCGAAGCGCCTGTTCCAGCTCTTTCGTCCATATGAGGCATGTCTGA
GTTAATTGGTTTTGCAGCGAGGAAGGCACCTTTGCGAAACTGTGCGTGTG
CGGAAGCACTCTCGATAACTTCACTCGCTTGATTTGTTCCTCGTCGTTGT
GTGGAGAGATGATCAGGTTCCAAGTCTGGGTCTCGCCCCCGCGACAACTA
CAGGAAGAACATAAAATGCATAACAAGGCATACTCGTCGAAAATGATTGT
CCTGGTTGAGTGAGTGCAACTCTCCGACGTGGGGTGCATTGATTGATTCT
ACTGTGGTCGAGGCATGGATACAAGCACAGCTCTCGACCTAACAAATCGC
GGGTTGTGTGTTTGGCAACAGGGTTTCTAGAGCTTGGAGAGACCGGCGAG
GAGGGGGCGGCGAGGGAAGCGAGGGAAGAGATGAACGCCGATGTGGATGT
TGGAGGGCTTCTTGCAGTGTATTCCCTGCCGCACATCGGCCAAATGTAAG
CAAGCTTTGCCTTTTTTCCTTGGCCTTGCATAGGGTGGGTGGAAGGGGTG
GTGGGTGAGGGGGGGGTTGTATGATCTATGAAGAGGAGAGCCCTCCTTGC
CATATTTCGGCATACAGAGTTGAATCCGCATCAAGAACAAACCACCGCCA
GTTGCTTTGAACGAGGTGAATATTCTGGGGCAAAACACTCGCCGCAGTTA
CACAAGGACCGGGCAAGATTCACCACTTCCTTGGCCGTAAAGGCTACAAT
ATCGGGTAAATGGCCAAGGACTTGCCTAAATGAAGGCGCCCGAATACTTC
GCCCCTGCACAGGGGACTTTCGCTTGTTCTCAGAGCCCTTGAGTTCTTCG
ACGTGATGATGCGGGACGTTCCCTTTCTCTGTCCCTGGCTTCTACTGTTT
CAATGGTGAAGCCAGATGATCTACTCATCGGAACTAAAGGACACCCAAGG
AGCGAATGGCGCATTGGTCGACAACGCAAAGAGCTTCTCTGCGGGCCAAG
AAACGGACGAGGCAAGTGCAATATGAATACGGTGGACTCCAACCGCAACT
CATTGGATGGAGGCACGAAACCTATGGTCATTCCATCGGTGCCAAGAACT
ACGGCCTGTGGCTGTCGTATAGCCCGCATGGCTTGTCATCGTTTTTTTTT
GCCTCGTACTTTTGGAACTGTCGCGGACGGAGGGGATGGCACGCCGTAAT
TGAATTTCCCTTCCTGCCATGAATTTATTTTCAGGACGTTCCACATACCT
TTAACCAAATATTCAATGAGCGCAAGCAGAGATGCCGAGAGGTGTGGACA
TCCACGATCGATTTCCGCGGGTAATCAGCTACTGACGCATCCATGCGAAG
CACCTTGGAGATGAGACGCATGGTTCGGCTCTTGACGTCGTCATTTCGAT
CCTACCATGGCAGCAGTGTATGTGGCGGGCTATTTCCAGTTTCCTAGTCA
TCTGCTGGCGACAAGCATGAAGTTACCCCTCTCACAGCAGGTGCTGTACC
ATTCCCTTGGTGTGCGTGCAGGTAATCTCCGTTCGATGGGAAGATATTCC
GTGGGATACCCTTGCCTTTCCCACCACATCGTGGGCGCTGTGGCATCACC
GTCTCAGGGTCGAAGAGGCCGCCACGAGGCCAATCATTAGCTCATCTTCA
GGGCCATCGTTGGGTGCGGGTGAGGGCACAAGGAGAGGCTTCTCAGGAGG
AGATACCGCTGTTTCAGCTATGGCGAAGGCTGTTGCTGAAGATGACCGTG
TCGTGGGCACAAGGACGGATCACTCTGTGCCCGGGATCTCTGATACAAGG
GGTGGAACCGGGGTCGGAGTCGCGTTCGGGGCTATTGCGGGGACGGTATT
CTCTGTGCCATCGGCGAACAGCTCGCTTTTCTGGCGCCCCGACGTAGGGC
TGCACCAAAAGGAGGGTTGGAACGTTTCCACCGACTCGTAGTTGATCAAA
GTCGCGCCTTTGTGTGTCTTGTCGATTTCCTTCTAAACACCGTGTCTTTC
CCGAGTACCAAGGTTGTTTTGAGCCTGC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig115:5558..10935+

>mRNA_E-fasciculatus_F_contig115.1208.1 ID=mRNA_E-fasciculatus_F_contig115.1208.1|Name=mRNA_E-fasciculatus_F_contig115.1208.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1992bp|location=Sequence derived from alignment at E-fasciculatus_F_contig115:5558..10935+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATATCTTCAGCAATGTCATCGGCCTCGCTGATTGGGCGACCGGTACA
TGTAGCCGCGAACAGGTTGCGAACAACATCAACCGCAACAGCAGCAGCAG
CAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCACTACCTTCGTTCGAG
TACAAGGTGCAGTCGACCGAAGATCCCAAGCTCAGAAAGACGTGCGCCAC
TTGTGGGTTTGTCAACTATGATATCTTCAGCAATGTCATCGGCCTCGCTG
ATTGGGCGACCGGTACATGTAGCCGCGAACAGGTTGCGAACAACATCAAC
CGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAG
CACTACCTTCGTTCGAGTACAAGGTGCAGTCGACCGAAGATCCCAAGCTC
AGAAAGACGTGCGCCACTTGTGGGTTTGTCAACTACGAAAACCCTAAGGT
CATATGCGGCTCGGTGCTTACTGCGAAGGGAGGTGAAGAGGCCGACGGAA
ACGACGGCTTTTATGTACTTGGCCGCCGCAACATACAGCCACGACGAGGC
TTTTGGGGCATACCTGCAGACGAAAACCCTAAGGTCATATGCGGCTCGGT
GCTTACTGCGAAGGGAGGTGAAGAGGCCGACGGAAACGACGGCTTTTATG
TACTTGGCCGCCGCAACATACAGCCACGACGAGGCTTTTGGGGCATACCT
GCAGGGTTTCTAGAGCTTGGAGAGACCGGCGAGGAGGGGGCGGCGAGGGA
AGCGAGGGAAGAGATGAACGCCGATGTGGATGTTGGAGGGCTTCTTGCAG
TGTATTCCCTGCCGCACATCGGCCAAATGGTTTCTAGAGCTTGGAGAGAC
CGGCGAGGAGGGGGCGGCGAGGGAAGCGAGGGAAGAGATGAACGCCGATG
TGGATGTTGGAGGGCTTCTTGCAGTGTATTCCCTGCCGCACATCGGCCAA
ATCCAGATGATCTACTCATCGGAACTAAAGGACACCCAAGGAGCGAATGG
CGCATTGGTCGACAACGCAAAGAGCTTCTCTGCGGGCCAAGAAACGGACG
AGCCAGATGATCTACTCATCGGAACTAAAGGACACCCAAGGAGCGAATGG
CGCATTGGTCGACAACGCAAAGAGCTTCTCTGCGGGCCAAGAAACGGACG
AGGTAATCTCCGTTCGATGGGAAGATATTCCGTGGGATACCCTTGCCTTT
CCCACCACATCGTGGGCGCTGTGGCATCACCGTCTCAGGGTCGAAGAGGC
CGCCACGAGGCCAATCATTAGCTCATCTTCAGGGCCATCGTTGGGTGCGG
GTGAGGGCACAAGGAGAGGCTTCTCAGGAGGAGATACCGCTGTTTCAGCT
ATGGCGAAGGCTGTTGCTGAAGATGACCGTGTCGTGGGCACAAGGACGGA
TCACTCTGTGCCCGGGATCTCTGATACAAGGGGTGGAACCGGGGTCGGAG
TCGCGTTCGGGGCTATTGCGGGGACGGTATTCTCTGTGCCATCGGCGAAC
AGCTCGCTTTTCTGGCGCCCCGACGTAGGGCTGCACCAAAAGGAGGGTTG
GAACGTTTCCACCGACTCGTAGGTAATCTCCGTTCGATGGGAAGATATTC
CGTGGGATACCCTTGCCTTTCCCACCACATCGTGGGCGCTGTGGCATCAC
CGTCTCAGGGTCGAAGAGGCCGCCACGAGGCCAATCATTAGCTCATCTTC
AGGGCCATCGTTGGGTGCGGGTGAGGGCACAAGGAGAGGCTTCTCAGGAG
GAGATACCGCTGTTTCAGCTATGGCGAAGGCTGTTGCTGAAGATGACCGT
GTCGTGGGCACAAGGACGGATCACTCTGTGCCCGGGATCTCTGATACAAG
GGGTGGAACCGGGGTCGGAGTCGCGTTCGGGGCTATTGCGGGGACGGTAT
TCTCTGTGCCATCGGCGAACAGCTCGCTTTTCTGGCGCCCCGACGTAGGG
CTGCACCAAAAGGAGGGTTGGAACGTTTCCACCGACTCGTAG
back to top