mRNA_E-fasciculatus_F_contig115.1206.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig115.1206.1
Unique NamemRNA_E-fasciculatus_F_contig115.1206.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig115.1206.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI)

HSP 1 Score: 494 bits (1272), Expect = 4.480e-176
Identity = 242/265 (91.32%), Postives = 250/265 (94.34%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPTESTGLAVFAELWGNFALRQFALAAVSPSAVKEWAAQGQARKGASMWYLVKDYLTRGGIDEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGIE 795
            MDKSGASGARRVATE+WRKDELVFDTVQWRRGDGFAADVMAS WKLLHGGCVESLRNHKGRSCKW+TIFRHPIARLLSAYDHCLGAPKDP+CPPTESTGLA FAELWGNFA+RQFALAAVSPSAVKEWAAQ QAR G SMWYLVK+YL RGGI EDEVL S LEPVKGLLSTQYAAVGIAQEL+TTMVLFSKALS EGLDW+SSWATLGINEEDKQDSEYDITES  FRQAL NPRI SALRLDMSLYEHAVHVF DQVA+FGIE
Sbjct:    1 MDKSGASGARRVATEQWRKDELVFDTVQWRRGDGFAADVMASRWKLLHGGCVESLRNHKGRSCKWITIFRHPIARLLSAYDHCLGAPKDPVCPPTESTGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVLGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDITESEPFRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGIE 265          
BLAST of mRNA_E-fasciculatus_F_contig115.1206.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE)

HSP 1 Score: 488 bits (1255), Expect = 3.020e-169
Identity = 240/265 (90.57%), Postives = 247/265 (93.21%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPTESTGLAVFAELWGNFALRQFALAAVSPSAVKEWAAQGQARKGASMWYLVKDYLTRGGIDEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGIE 795
            MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHK RSCKWLTIFRHPIARLLSAY HCL APKDP+CPPTESTGL VFAELWGNFA+RQFAL +VSPSAVKEWAAQ QAR G SMWYLVK+YL RGGI EDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALS EGLDW+SSWATLGINEE KQDSEYDI ES  FRQAL NPRI SALRLDMSLYEHA+HVF DQVA+FGIE
Sbjct:  279 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKERSCKWLTIFRHPIARLLSAYHHCLEAPKDPVCPPTESTGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATLGINEEVKQDSEYDIAESEPFRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGIE 543          
BLAST of mRNA_E-fasciculatus_F_contig115.1206.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.330e-45
Identity = 106/308 (34.42%), Postives = 158/308 (51.30%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELV----FDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKG---RSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPT------ESTGLAVFAELWGNFALRQFALAAVSPSAVK----EWAAQG-----QARKGASMWYLVKDYLTRGGIDEDE-------------------VLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGIEEG 801
            M+K+G S  + +    W K + V    +D+ QW  G  FA D +     L+ G   E LR   G   R CKW TIFRHPI RL+SAY +C   P+D +C         + T L  FAE WG+F LRQFALA V P  +     ++ A G       ++    WY +K YL +  +DE E                    +  +L+PV+ LL+ +YAAVG+ ++ ET+++LF++AL   G DW  ++ ++G       D  +   E+    ++  +PR+   L LD+ LY++AV V N QV K+G+ EG
Sbjct:    1 MNKAGGSTVKYMLAP-WTKAQNVTVGLYDSPQWLEGKDFAQDFLGDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQ-LDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKK---NSDGTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGLGEG 303          
BLAST of mRNA_E-fasciculatus_F_contig115.1206.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.460e-44
Identity = 101/299 (33.78%), Postives = 151/299 (50.50%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMAS-----HWKLLHGGCVESLR-------NHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPP----TESTGLAVFAELWGNFALRQFALAAVSPSAVKEW-------AAQGQARKGASM---WYLVKDYLT-RGGIDEDEV-----LESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLG-INEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGIEE 798
            + K+G +  +R+  + W  +   +D+ QW++G G+A  V AS      W    GG +E+LR       + +   C+W T+FRHP++RL+SAY +C   P D +C      + +  L  FA  WGNFALRQFAL  VS   VK++        A G   +   +   WY++K +L  R G+ +D       LE M  PV  LL   YA VGI ++   T+ LF  AL   G+ W   +   G +N     D+ +   +    +QAL++P I   L LD+ LY  AV +FN Q   +GI +
Sbjct:   94 LQKAGGTTVKRLLFDSWGSESTTYDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLNDRSGVADDTSPEGTRLEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLN----VDTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGIAQ 388          
BLAST of mRNA_E-fasciculatus_F_contig115.1206.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 4.270e-38
Identity = 92/287 (32.06%), Postives = 140/287 (48.78%), Query Frame = 1
Query:    1 MDKSGASGARRVA----TERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPT----ESTGLAVFAELWGNFALRQFALAAVSPS------AVKEWAAQGQARKGASM--WYLVKDYLTR-------GGIDEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGI 792
            M+KSG    R++     TE+     L FD ++W  G  +A   +  +    +GG  E LR +  R CKW T+FRHP++R++SAY +C  A  D +C           L  FAE WGN+ LRQFALA++          V E+  Q +      +  WY  K YL         G    +  L   L   +  LST+YAAVGI +E + +M LF++ L+    DW   +   G  +++   S+++    +  + A  +P +   + LD+ LY+HA+ V   QVA  GI
Sbjct:   58 MNKSGGMTVRKMIMPFLTEKGVSTAL-FDDIEWSSGRSYAETFVKENAVFTYGGYTEGLRMYDDRDCKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDFCGPTQPESGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSG--KKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQVADLGI 341          
BLAST of mRNA_E-fasciculatus_F_contig115.1206.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.100e-35
Identity = 93/295 (31.53%), Postives = 140/295 (47.46%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAAD-----VMASHWKLLHGGCVESLRNHK--GRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPP----TESTGLAVFAELWGNFALRQFALAAVSPSAVKEWAAQGQARKGASMWYLVKDYLTR-----GGI---------------DEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGI 792
            + K G S  + +  +RW     ++D+++W+ GD F+A       +   W ++ GG  E+LR  +  G  C++ T+FRHPIAR++SAY +C     D  C       +   L  FA+ WGNFALRQFAL  V    V+E              Y +K YL R     GG+                 D  L  +L+P   L+   Y AVGI ++  TT+ LF   L    ++W   +A  G +  D  + + +I    T +QA  +  +   +RLD+ LYEHAV VF+ Q    G+
Sbjct:  183 LQKCGGSTVKDLLEDRWGSRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSDDVQE--------------YQLKMYLERPQKEDGGVLGQREAMTAHQDAAATPDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVDIVNKQLEIE---TLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGL 460          
BLAST of mRNA_E-fasciculatus_F_contig115.1206.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 2.140e-35
Identity = 95/302 (31.46%), Postives = 147/302 (48.68%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAAD-----VMASHWKLLHGGCVESLRNHK--GRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPP----TESTGLAVFAELWGNFALRQFALAAVSPSAVKEWAAQGQAR-------KGASMWYLVKDYLTRG-----GI-----------DEDEVLES----MLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGI 792
            + K G S  + +    +     ++D+ QW+ GD  +A+          W ++ GG  E+LR  +     C++ T+FRHPIAR++SAY +C     D  C       +   L  FA+ WGNFA+RQFAL  V    V+E+    +A+       K  + WY +K YL R      G+           D    LE+    +L+P   L+ + Y AVGI ++  TT+ LF  AL   G+ W + +A  G    D ++      ES T +QA  +  +   +RLD+ LYEHAV VF++Q   +G+
Sbjct:  162 LQKCGGSTVKYMLRRSYGSRYSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATLEAPLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRL---ESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGL 460          
BLAST of mRNA_E-fasciculatus_F_contig115.1206.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 9.250e-27
Identity = 85/288 (29.51%), Postives = 136/288 (47.22%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELV---FDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKG-RSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPT----ESTGLAVFAELWGNFALRQFALAAVSPSAVKEWAAQGQARKGASMWYLVKDYL-----------TRGGIDEDEVLESM-----LEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGI 792
            M+K+G +  RR+  +           F   Q+  GD     ++     L+ G   E LR +     CKW T+ RHPIARL+SA+++C   P D +C       E   +  FAE WGN  + QFALA    + +     +      +  WY  K Y            T   I   +V +++     L+PV+ LL ++YAAVGI ++ ET+M+LF  AL   G +W S+ A+          ++ D+  ++     + +P +   L LD+ LYEHA  V   Q++++G+
Sbjct:   43 MNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNAGDRGVQQILDRRPSLIWGAYTEGLRPYATVLGCKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAFEDLNDILVTEVK------SPPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRNVHDSKAKNDLLVAS-----MTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319          
BLAST of mRNA_E-fasciculatus_F_contig115.1206.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 9.600e-27
Identity = 77/256 (30.08%), Postives = 122/256 (47.66%), Query Frame = 1
Query:   85 WRRGDGFAADVMASHWKLLHGGCVESLRNHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPT----ESTGLAVFAELWGNFALRQFALAAVSPSAVKEWAAQGQARKGASMWYLVKDYL--------------TRGGIDEDEV--LESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGI 792
            + RGD    D++     L+ GG  E LR    + CKW T+ RHPIARL+SA+ +C G  +D +C       E   +  FA+ WGN+AL QFAL  V    +            A  W+  K Y                R   DE +   +  +L+PV+ LL + YAAVGI +  + +M+LF  AL   G +W  + A+L   +   +     + + A    A+ +P +   + LD+ LYE+A  +  +Q+ ++ +
Sbjct:   74 YARGDKGIQDLLNDKPVLIAGGYAEGLRTSAFQGCKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEIFA------EEVDAPAWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNK----IVEKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319          
BLAST of mRNA_E-fasciculatus_F_contig115.1206.1 vs. uniprot
Match: F0Y323_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y323_AURAN)

HSP 1 Score: 66.2 bits (160), Expect = 1.250e-8
Identity = 64/245 (26.12%), Postives = 95/245 (38.78%), Query Frame = 1
Query:   52 RKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPTESTGLAV-----FAELWGNFALRQFALAA-VSPSAVKEWAAQGQARKGA-SMWYLVKDYLTRGGIDEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVF 765
            R D+  FD    R  D    D  A   + L+GG   S     G SC W+T FR P+ARL+SA  HC     DP+C    +   A       A  WGNF      LA   + +A      + + R GA  +W   +  L  G     E   + L  V   L   +  V + +  E +M L    +      WA      G +       ++    +A    A A+P +   +  D ++Y  A+ +F
Sbjct:  671 RCDDANFDWASKRCPD---LDPAAGANRWLNGGYALS-HAAAGPSCAWITNFREPVARLVSAQFHCTLHDHDPLCGDRPAAWFAAANASRMARYWGNFGFTNLLLAPRFAGTAAPRRDMRARRRDGAPKVWQRWRAALGGGDDPRTEAGAANLRRVVAALGDLFDVVVVVERWEDSMALLDCRVPLRDGTWAD---LAGAHLNTHGSEQHGDRAAAALAVARADPAVAEEIAADTAIYSAALALF 908          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig115.1206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LU75_ECTSI4.480e-17691.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQM0_9PHAE3.020e-16990.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS84_ECTSI1.330e-4534.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G715_ECTSI2.460e-4433.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JY77_9PHAE4.270e-3832.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G716_ECTSI1.100e-3531.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FWQ3_ECTSI2.140e-3531.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQY7_9PHAE9.250e-2729.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNJ0_9PHAE9.600e-2730.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y323_AURAN1.250e-826.12Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig115contigE-fasciculatus_F_contig115:1566..2369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue3.1e-38
Seed eggNOG ortholog2880.D7G715
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2CYGC@1,2S47N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size804
Cds size804
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927662.5066469-CDS-E-fasciculatus_F_contig115:1565..23691622927662.5066469-CDS-E-fasciculatus_F_contig115:1565..2369Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig115 1566..2369 -
1695995639.3098857-CDS-E-fasciculatus_F_contig115:1565..23691695995639.3098857-CDS-E-fasciculatus_F_contig115:1565..2369Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig115 1566..2369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig115.1206.1prot_E-fasciculatus_F_contig115.1206.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig115 1566..2369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig115.1206.1

>prot_E-fasciculatus_F_contig115.1206.1 ID=prot_E-fasciculatus_F_contig115.1206.1|Name=mRNA_E-fasciculatus_F_contig115.1206.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=268bp
MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGG
CVESLRNHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPTESTGL
AVFAELWGNFALRQFALAAVSPSAVKEWAAQGQARKGASMWYLVKDYLTR
GGIDEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLD
WASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEH
AVHVFNDQVAKFGIEEG*
back to top

mRNA from alignment at E-fasciculatus_F_contig115:1566..2369-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig115.1206.1 ID=mRNA_E-fasciculatus_F_contig115.1206.1|Name=mRNA_E-fasciculatus_F_contig115.1206.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=804bp|location=Sequence derived from alignment at E-fasciculatus_F_contig115:1566..2369- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACAAGAGCGGCGCTTCAGGGGCTCGGCGTGTCGCCACGGAGCGTTG GCGGAAGGATGAGCTCGTGTTCGACACTGTCCAGTGGCGCCGGGGTGACG GCTTTGCGGCGGACGTCATGGCTTCTCACTGGAAACTCCTGCACGGAGGC TGCGTGGAGAGCCTTCGGAACCACAAGGGACGGTCGTGCAAGTGGCTCAC TATCTTCAGGCACCCGATCGCACGTCTTTTATCCGCGTATGACCATTGCC TAGGGGCCCCCAAGGACCCCATTTGCCCACCCACCGAATCGACGGGGCTG GCAGTATTCGCTGAACTCTGGGGTAACTTTGCATTGAGACAATTCGCGCT GGCAGCAGTGTCACCGTCCGCAGTGAAGGAATGGGCAGCGCAAGGGCAAG CGCGTAAGGGTGCGTCCATGTGGTACCTCGTCAAGGATTACCTGACTCGG GGAGGGATAGATGAAGACGAGGTGCTCGAGAGCATGCTGGAGCCTGTGAA GGGGCTGCTCAGCACGCAGTACGCTGCTGTCGGGATAGCCCAGGAGCTGG AAACGACGATGGTTCTGTTTAGCAAGGCACTATCTACGGAAGGTCTGGAC TGGGCGTCCTCTTGGGCGACACTCGGCATCAATGAGGAAGACAAGCAAGA TTCAGAATACGACATCACTGAATCCGCAACATTTCGCCAGGCCCTGGCGA ATCCTCGAATCACCTCTGCCCTAAGGTTGGATATGTCACTCTACGAGCAT GCCGTGCACGTATTCAACGATCAAGTCGCCAAATTTGGAATTGAGGAGGG ATGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig115:1566..2369-

>mRNA_E-fasciculatus_F_contig115.1206.1 ID=mRNA_E-fasciculatus_F_contig115.1206.1|Name=mRNA_E-fasciculatus_F_contig115.1206.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1608bp|location=Sequence derived from alignment at E-fasciculatus_F_contig115:1566..2369- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACAAGAGCGGCGCTTCAGGGGCTCGGCGTGTCGCCACGGAGCGTTG
GCGGAAGGATGAGCTCGTGTTCGACACTGTCCAGTGGCGCCGGGGTGACG
GCTTTGCGGCGGACGTCATGGCTTCTCACTGGAAACTCCTGCACGGAGGC
TGCGTGGAGAGCCTTCGGAACCACAAGGGACGGTCGTGCAAGTGGCTCAC
TATCTTCAGGCACCCGATCGCACGTCTTTTATCCGCGTATGACCATTGCC
TAGGGGCCCCCAAGGACCCCATTTGCCCACCCACCGAATCGACGGGGCTG
GCAGTATTCGCTGAACTCTGGGGTAACTTTGCATTGAGACAATTCGCGCT
GGCAGCAGTGTCACCGTCCGCAGTGAAGGAATGGGCAGCGCAAGGGCAAG
CGCGTAAGGGTGCGTCCATGTGGTACCTCGTCAAGGATTACCTGACTCGG
GGAGGGATAGATGAAGACGAGGTGCTCGAGAGCATGCTGGAGCCTGTGAA
GGGGCTGCTCAGCACGCAGTACGCTGCTGTCGGGATAGCCCAGGAGCTGG
AAACGACGATGGTTCTGTTTAGCAAGGCACTATCTACGGAAGGTCTGGAC
TGGGCGTCCTCTTGGGCGACACTCGGCATCAATGAGGAAGACAAGCAAGA
TTCAGAATACGACATCACTGAATCCGCAACATTTCGCCAGGCCCTGGCGA
ATCCTCGAATCACCTCTGCCCTAAGGTTGGATATGTCACTCTACGAGCAT
GCCGTGCACGTATTCAACGATCAAGTCGCCAAATTTGGAATTGAGGAGGG
ATGAATGGACAAGAGCGGCGCTTCAGGGGCTCGGCGTGTCGCCACGGAGC
GTTGGCGGAAGGATGAGCTCGTGTTCGACACTGTCCAGTGGCGCCGGGGT
GACGGCTTTGCGGCGGACGTCATGGCTTCTCACTGGAAACTCCTGCACGG
AGGCTGCGTGGAGAGCCTTCGGAACCACAAGGGACGGTCGTGCAAGTGGC
TCACTATCTTCAGGCACCCGATCGCACGTCTTTTATCCGCGTATGACCAT
TGCCTAGGGGCCCCCAAGGACCCCATTTGCCCACCCACCGAATCGACGGG
GCTGGCAGTATTCGCTGAACTCTGGGGTAACTTTGCATTGAGACAATTCG
CGCTGGCAGCAGTGTCACCGTCCGCAGTGAAGGAATGGGCAGCGCAAGGG
CAAGCGCGTAAGGGTGCGTCCATGTGGTACCTCGTCAAGGATTACCTGAC
TCGGGGAGGGATAGATGAAGACGAGGTGCTCGAGAGCATGCTGGAGCCTG
TGAAGGGGCTGCTCAGCACGCAGTACGCTGCTGTCGGGATAGCCCAGGAG
CTGGAAACGACGATGGTTCTGTTTAGCAAGGCACTATCTACGGAAGGTCT
GGACTGGGCGTCCTCTTGGGCGACACTCGGCATCAATGAGGAAGACAAGC
AAGATTCAGAATACGACATCACTGAATCCGCAACATTTCGCCAGGCCCTG
GCGAATCCTCGAATCACCTCTGCCCTAAGGTTGGATATGTCACTCTACGA
GCATGCCGTGCACGTATTCAACGATCAAGTCGCCAAATTTGGAATTGAGG
AGGGATGA
back to top