mRNA_E-fasciculatus_F_contig11497.1205.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11497.1205.1
Unique NamemRNA_E-fasciculatus_F_contig11497.1205.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11497.1205.1 vs. uniprot
Match: A0A6H5JCP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP3_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.510e-47
Identity = 246/265 (92.83%), Postives = 248/265 (93.58%), Query Frame = 1 
Query:    1 DDSGAQGLRHIAAGLAAALALCLPALLVATVAWKRASGNVCFGSSHTKESPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLELAVXXXXXXXXXXXXXXXXXXXXXXXXXX-----HQYRRSNSGVSLRSLRSVGSLNDMQHALVREPLSPASTVGQDDIQRLRSLLDTERSRRVAAETALSVGGGSVSSRRSGMC 780
            DDSGAQ LRHIAAGLAA LALCL ALLVA VAWKRASG  CFG SHTKESP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    L+LAVXXXXXXXXXXXXXXXXXXXXXXXXXX     HQYRRSNSGVSLRSLRSVGSLNDMQHALVREPLSPASTVGQDDIQRLRSLLDTERSRR+AAETALSVGGGSVSSRRSGMC
Sbjct:   16 DDSGAQSLRHIAAGLAAGLALCLAALLVAAVAWKRASGGDCFGGSHTKESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQ--LDLAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQYRRSNSGVSLRSLRSVGSLNDMQHALVREPLSPASTVGQDDIQRLRSLLDTERSRRMAAETALSVGGGSVSSRRSGMC 278
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BLAST of mRNA_E-fasciculatus_F_contig11497.1205.1 vs. uniprot
Match: D8LEF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF9_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.170e-15
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 DDSGAQGLRHIAAGLAAALALCLPALLVATVAWKRASGNVCFGSSHTKES 150
            DDSGAQGLRHIAAGLAAALALCL ALLVA VAWKRASG  CFG  HTKES
Sbjct:   16 DDSGAQGLRHIAAGLAAALALCLAALLVAAVAWKRASGRDCFGGGHTKES 65
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BLAST of mRNA_E-fasciculatus_F_contig11497.1205.1 vs. uniprot
Match: D8LEG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG0_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 7.350e-15
Identity = 42/54 (77.78%), Postives = 44/54 (81.48%), Query Frame = -1 
Query:  958 RRSLQGMRLHCPRTRKFVEGRVRESGGPGSPNMHV*EARVGARGRRGRPARAAP 1119
            R SLQ +RLH PR RK VEGRVRE GGPGSPN+HV EARVGARGRR  PAR AP
Sbjct:   11 RGSLQSVRLHGPRARKLVEGRVREPGGPGSPNVHVGEARVGARGRRVPPARPAP 64
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11497.1205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JCP3_9PHAE1.510e-4792.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEF9_ECTSI2.170e-1588.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEG0_ECTSI7.350e-1577.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11497contigE-fasciculatus_F_contig11497:1202..4364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1212
Cds size1212
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927662.352784-CDS-E-fasciculatus_F_contig11497:1201..18301622927662.352784-CDS-E-fasciculatus_F_contig11497:1201..1830Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11497 1202..1830 +
1695995639.2433603-CDS-E-fasciculatus_F_contig11497:1201..18301695995639.2433603-CDS-E-fasciculatus_F_contig11497:1201..1830Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11497 1202..1830 +
1622927662.3680077-CDS-E-fasciculatus_F_contig11497:3781..43641622927662.3680077-CDS-E-fasciculatus_F_contig11497:3781..4364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11497 3782..4364 +
1695995639.251412-CDS-E-fasciculatus_F_contig11497:3781..43641695995639.251412-CDS-E-fasciculatus_F_contig11497:3781..4364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11497 3782..4364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11497.1205.1prot_E-fasciculatus_F_contig11497.1205.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11497 1202..4364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11497.1205.1

>prot_E-fasciculatus_F_contig11497.1205.1 ID=prot_E-fasciculatus_F_contig11497.1205.1|Name=mRNA_E-fasciculatus_F_contig11497.1205.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=404bp
DDSGAQGLRHIAAGLAAALALCLPALLVATVAWKRASGNVCFGSSHTKES
PPSGSGGGGGGGSGDEITTRSAPSSSAAAAEAGGGHTAPPYQAAVAAPNE
RLLLTAEEGYAATAGGKNGGGGGGDSGEEEQRTTNTESCDGGGGQRPPHL
ELAVVEEGRGGGGGGRGRNHATRAAAAKQQHQYRRSNSGVSLRSLRSVGS
LNDMQHALVREPLSPASTVGQDDIQRLRSLLDTERSRRVAAETALSVGGG
SVSSRRSGMCTPSSVGGGGGGGGTPKSRSSSYASFNKQAFARDLDPHGQE
VLSPKSMPPGAGFSTPGRSRGGAGGAPSTPSRSYASLSNMHVGTPRAPRL
SYSALHKFPSARAVEAHALEASSNGAKWARSAISRVGRGGGGGETKAEQL
YDSV
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mRNA from alignment at E-fasciculatus_F_contig11497:1202..4364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11497.1205.1 ID=mRNA_E-fasciculatus_F_contig11497.1205.1|Name=mRNA_E-fasciculatus_F_contig11497.1205.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3163bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11497:1202..4364+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGACTCGGGCGCGCAGGGCCTCCGACACATCGCGGCGGGCCTCGCGGC
GGCCTTGGCTCTCTGCCTCCCGGCGCTCCTGGTGGCCACAGTCGCCTGGA
AGCGCGCATCCGGCAACGTCTGCTTCGGCAGCAGCCACACCAAGGAGAGC
CCCCCTTCCGGCAGCGGCGGCGGCGGCGGCGGTGGCAGCGGTGACGAGAT
CACGACGAGATCGGCGCCGTCCTCGTCGGCAGCGGCGGCGGAGGCCGGGG
GGGGGCACACGGCCCCGCCCTACCAGGCGGCCGTGGCGGCGCCGAACGAG
CGGCTGCTGCTCACGGCCGAGGAAGGCTACGCCGCCACCGCCGGCGGGAA
GAATGGCGGCGGCGGCGGCGGCGACAGCGGTGAGGAGGAGCAGAGGACCA
CCAACACGGAGAGCTGCGACGGCGGCGGCGGGCAGAGGCCGCCGCACCTC
GAGCTGGCCGTCGTCGAGGAAGGCCGCGGCGGCGGGGGCGGCGGGAGGGG
GCGGAATCACGCCACCCGTGCTGCCGCGGCGAAGCAGCAGCACCAGTACC
GCCGGTCGAACTCGGGCGTGAGCCTCAGGAGCCTAAGGAGTGTCGGGAGC
CTCAACGACATGCAGCACGCATTGGTTCGGTGAGTTTCGGTTTTCTGTTT
GTTCGAAGGTGATGGTACAGGGTACCGGCTGGCCACAATTTGGAGGACTT
TTCCCTATTTTGCGCGCAGAAACCCTGGGGTCCTTGTTTTCTCTGTGGGT
ATTCAACGGCTGCGTGTGCTTGGGTTTTAAGGGTTTCGTGTGCTTGACGC
CCAAAGTTGAAAAAATTGGCTCTTATGCCGATCGCCCCGGTCGTCTGGTT
AGGTGTCCGCCTAACCCTCTAGCTCCGGGTCGTGGGTTCGAGTCCCGACG
TGAGTGAGCTTTCTTACAACATGAGCTTTTCTCTCGCTTGCTTTCCTGGT
TGTGGAAAGCGCTATTTATTTTGTTCGTGTGTACACAGGGAAGGGAAGAG
AGGGCCGTGCCCTTCTCGCGTTACCAATCTCAGGCAAAAAGTGCCGCAGG
AGAGGTGGGGAGGGAGAGGAGCTGTACCGGCAGAAATGCTATGGGCACTG
GTTTAACGTGATGACAAAAAAAAAAAAAACGGGAACGTGTTCCGTGCGAA
GAAAGCCTTGGCAAGAATTACGAAAAAAACTGCTTTGCATAAAACAGGAA
GCCTTCTGATTCCTGCGCACCGCACACAAGTCCCACAGACCATGGATAAC
ACTAAAACATCAGAGTGAGTGATGAAACGCATCGGATTACAGCAGTAGGA
CCTGCAGCAAAGACGCCACTAGCCTAAAAGCACACGCTCACGCACACTTC
AGCGAGAAAAGAAAGCACCCCGCACATGATGCAAATTCCAGGTAATTCTG
CAGGTTGTACGCAAAACCAGCACTCCCGAACGTCATGACGTTGAGATTCA
ACGGTGCCACTGCGATGACATTGGCCATGTCCTCTTGCGTCGCCCCCCGG
GAGGCAAGCCACCTAACTCGCGAAGGAGAGCCTAGTAATTCTTGAATATT
AACAACACATACACCCTTGTTCGCCAAGGTCTTGCGTGGTGGCCGGTTTG
TACGAGATGTTGGTTCAGTGTCAATTGTTGTGTTTTTTTTCTTGTGCTGG
CTGTAGTGTGGATCACTCGGAGGCGTGAGCACTACCACACTGCCACATGT
ACACCTCGTCTGTAGACAAATTCGTCCCTCTGAAACTCTACGAGAACACC
AGCCCTGGCATCAACAAGCGCAGGTTGATACAAGTCGAGCACTGCTGTCT
GCACGGAAAAGGAGTTGACGAACCAAAGGGACAATCGGAATAAAGTCAGG
CATGCTGTCTATCTTTTCGCGCACAACACAGGGAGAGTTGAACTAAACAG
TCTTCATGAACCTTACTCCCCTAAATGTTCATGGACCTTACTCGCCTAAA
TGTTCATGAACCTCACTCCCCTCAATGTTCTGGCTGGAAATTGCACCAGG
ACGGAGAGCGTACTACCACTGCTTGCTGTCATGTGTGACGGGTTCATGAA
GATTGTTTTGTTCAGCTCTCCCTGTGTTGTGCGCGAAAGATAGACAGCAT
GCATGAATTTTCCGATTGCCCCTTTGATTCAACTCCATTTCCGTGCAGAC
AGCAGTGCTCGACTTCTATCAACCTGCGCTTGTTGATGCCAGGGTTGGTG
CTCTCGTAGAGTTTCAGAGGGACGATTTTTTGTCTACAGACGAGGTGTGG
GCGTGCCGGGGGTTTGCCACCGCCGCGGACACAAGGGTAGAGCAGTTTTT
TCTACTTTGTTGTGGCCGGAACGCACGCGCGCAGAGTATGACGCGTGACG
TAGAACCCCTTTCATTGAAGGACCGAGGTGCGAAAACGTTGAATCAACGG
TACACTAACTTGCTACGCACGCAACACATTTACGGTCGAGAGTTTTCTCT
GCTGATTGGTCCACAAGTTGCGACCTTCTGTGTTCTAGCGGCGTTGGCAG
AAGGCGGGTGATAAAGAGCATGTCAAGCTATAACCAACCCGGTTTGACAG
CGCTTCCTCCCTCCCCCCCGACCTGTCCAGGGAACCGCTTTCCCCGGCAT
CCACAGTGGGGCAGGACGACATCCAACGCCTGCGTTCGCTGCTGGATACC
GAGCGCTCCCGCCGCGTGGCGGCCGAGACAGCCCTCAGCGTCGGCGGCGG
AAGCGTCTCCTCCCGCCGCTCCGGCATGTGCACGCCTTCCTCCGTCGGAG
GGGGGGGAGGGGGCGGGGGCACTCCCAAGTCCCGGTCGTCTTCCTACGCG
TCGTTCAACAAACAGGCGTTTGCTCGTGACCTGGATCCGCACGGCCAGGA
GGTCCTTTCGCCGAAATCAATGCCCCCCGGCGCCGGGTTCAGTACGCCCG
GCAGGAGCAGGGGCGGCGCGGGCGGGGCGCCCTCGACGCCCTCTCGCTCC
TACGCGAGCCTCTCAAACATGCATGTTGGGACTCCCAGGGCCCCCAGACT
CTCGTACTCTGCCCTCCACAAATTTCCGAGTGCGCGGGCAGTGGAGGCGC
ATGCCCTGGAGGCTTCGTCGAACGGGGCCAAGTGGGCGCGGAGTGCGATT
TCGAGGGTAGGCAGGGGGGGTGGCGGCGGCGAGACCAAAGCGGAGCAGCT
CTACGATTCGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11497:1202..4364+

>mRNA_E-fasciculatus_F_contig11497.1205.1 ID=mRNA_E-fasciculatus_F_contig11497.1205.1|Name=mRNA_E-fasciculatus_F_contig11497.1205.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2424bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11497:1202..4364+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGACTCGGGCGCGCAGGGCCTCCGACACATCGCGGCGGGCCTCGCGGC
GGCCTTGGCTCTCTGCCTCCCGGCGCTCCTGGTGGCCACAGTCGCCTGGA
AGCGCGCATCCGGCAACGTCTGCTTCGGCAGCAGCCACACCAAGGAGAGC
CCCCCTTCCGGCAGCGGCGGCGGCGGCGGCGGTGGCAGCGGTGACGAGAT
CACGACGAGATCGGCGCCGTCCTCGTCGGCAGCGGCGGCGGAGGCCGGGG
GGGGGCACACGGCCCCGCCCTACCAGGCGGCCGTGGCGGCGCCGAACGAG
CGGCTGCTGCTCACGGCCGAGGAAGGCTACGCCGCCACCGCCGGCGGGAA
GAATGGCGGCGGCGGCGGCGGCGACAGCGGTGAGGAGGAGCAGAGGACCA
CCAACACGGAGAGCTGCGACGGCGGCGGCGGGCAGAGGCCGCCGCACCTC
GAGCTGGCCGTCGTCGAGGAAGGCCGCGGCGGCGGGGGCGGCGGGAGGGG
GCGGAATCACGCCACCCGTGCTGCCGCGGCGAAGCAGCAGCACCAGTACC
GCCGGTCGAACTCGGGCGTGAGCCTCAGGAGCCTAAGGAGTGTCGGGAGC
CTCAACGACATGCAGCACGCATTGGTTCGGACGACTCGGGCGCGCAGGGC
CTCCGACACATCGCGGCGGGCCTCGCGGCGGCCTTGGCTCTCTGCCTCCC
GGCGCTCCTGGTGGCCACAGTCGCCTGGAAGCGCGCATCCGGCAACGTCT
GCTTCGGCAGCAGCCACACCAAGGAGAGCCCCCCTTCCGGCAGCGGCGGC
GGCGGCGGCGGTGGCAGCGGTGACGAGATCACGACGAGATCGGCGCCGTC
CTCGTCGGCAGCGGCGGCGGAGGCCGGGGGGGGGCACACGGCCCCGCCCT
ACCAGGCGGCCGTGGCGGCGCCGAACGAGCGGCTGCTGCTCACGGCCGAG
GAAGGCTACGCCGCCACCGCCGGCGGGAAGAATGGCGGCGGCGGCGGCGG
CGACAGCGGTGAGGAGGAGCAGAGGACCACCAACACGGAGAGCTGCGACG
GCGGCGGCGGGCAGAGGCCGCCGCACCTCGAGCTGGCCGTCGTCGAGGAA
GGCCGCGGCGGCGGGGGCGGCGGGAGGGGGCGGAATCACGCCACCCGTGC
TGCCGCGGCGAAGCAGCAGCACCAGTACCGCCGGTCGAACTCGGGCGTGA
GCCTCAGGAGCCTAAGGAGTGTCGGGAGCCTCAACGACATGCAGCACGCA
TTGGTTCGGGAACCGCTTTCCCCGGCATCCACAGTGGGGCAGGACGACAT
CCAACGCCTGCGTTCGCTGCTGGATACCGAGCGCTCCCGCCGCGTGGCGG
CCGAGACAGCCCTCAGCGTCGGCGGCGGAAGCGTCTCCTCCCGCCGCTCC
GGCATGTGCACGCCTTCCTCCGTCGGAGGGGGGGGAGGGGGCGGGGGCAC
TCCCAAGTCCCGGTCGTCTTCCTACGCGTCGTTCAACAAACAGGCGTTTG
CTCGTGACCTGGATCCGCACGGCCAGGAGGTCCTTTCGCCGAAATCAATG
CCCCCCGGCGCCGGGTTCAGTACGCCCGGCAGGAGCAGGGGCGGCGCGGG
CGGGGCGCCCTCGACGCCCTCTCGCTCCTACGCGAGCCTCTCAAACATGC
ATGTTGGGACTCCCAGGGCCCCCAGACTCTCGTACTCTGCCCTCCACAAA
TTTCCGAGTGCGCGGGCAGTGGAGGCGCATGCCCTGGAGGCTTCGTCGAA
CGGGGCCAAGTGGGCGCGGAGTGCGATTTCGAGGGTAGGCAGGGGGGGTG
GCGGCGGCGAGACCAAAGCGGAGCAGCTCTACGATTCGGTGGGAACCGCT
TTCCCCGGCATCCACAGTGGGGCAGGACGACATCCAACGCCTGCGTTCGC
TGCTGGATACCGAGCGCTCCCGCCGCGTGGCGGCCGAGACAGCCCTCAGC
GTCGGCGGCGGAAGCGTCTCCTCCCGCCGCTCCGGCATGTGCACGCCTTC
CTCCGTCGGAGGGGGGGGAGGGGGCGGGGGCACTCCCAAGTCCCGGTCGT
CTTCCTACGCGTCGTTCAACAAACAGGCGTTTGCTCGTGACCTGGATCCG
CACGGCCAGGAGGTCCTTTCGCCGAAATCAATGCCCCCCGGCGCCGGGTT
CAGTACGCCCGGCAGGAGCAGGGGCGGCGCGGGCGGGGCGCCCTCGACGC
CCTCTCGCTCCTACGCGAGCCTCTCAAACATGCATGTTGGGACTCCCAGG
GCCCCCAGACTCTCGTACTCTGCCCTCCACAAATTTCCGAGTGCGCGGGC
AGTGGAGGCGCATGCCCTGGAGGCTTCGTCGAACGGGGCCAAGTGGGCGC
GGAGTGCGATTTCGAGGGTAGGCAGGGGGGGTGGCGGCGGCGAGACCAAA
GCGGAGCAGCTCTACGATTCGGTG
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