mRNA_E-fasciculatus_F_contig1148.1193.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1148.1193.1 vs. uniprot
Match: D7FM71_ECTSI (60S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM71_ECTSI) HSP 1 Score: 146 bits (368), Expect = 6.980e-41 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 2
Query: 62 MPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQLQ 277
MPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQLQ
Sbjct: 1 MPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQLQ 72
BLAST of mRNA_E-fasciculatus_F_contig1148.1193.1 vs. uniprot
Match: A0A836CJ21_9STRA (Ribosomal protein L38 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ21_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.020e-28 Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 2
Query: 62 MPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 274
MPKQIHDIRDFLQKARR+DAKSVKIK K TKFKIRCSRYLYTLCV DK+KADKLTQSLPPGL +K +
Sbjct: 1 MPKQIHDIRDFLQKARRKDAKSVKIK--KTAEVTKFKIRCSRYLYTLCVADKDKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_E-fasciculatus_F_contig1148.1193.1 vs. uniprot
Match: A0A485KGK6_9STRA (Aste57867_4412 protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KGK6_9STRA) HSP 1 Score: 107 bits (267), Expect = 6.410e-26 Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 2
Query: 62 MPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 274
MPKQI DIRDFLQKARR+DA+SVKIK K KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K +
Sbjct: 1 MPKQITDIRDFLQKARRKDARSVKIK--KTAQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_E-fasciculatus_F_contig1148.1193.1 vs. uniprot
Match: W2IQQ0_PHYPR (60S ribosomal protein L38 n=16 Tax=Peronosporaceae TaxID=4777 RepID=W2IQQ0_PHYPR) HSP 1 Score: 107 bits (266), Expect = 9.000e-26 Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 2
Query: 62 MPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 274
MPKQI DIRDFLQKARR+DA+SVKIK K+ KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K +
Sbjct: 1 MPKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_E-fasciculatus_F_contig1148.1193.1 vs. uniprot
Match: A0A067CFE6_SAPPC (60S ribosomal protein L38 n=3 Tax=Oomycota TaxID=4762 RepID=A0A067CFE6_SAPPC) HSP 1 Score: 107 bits (266), Expect = 9.000e-26 Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 2
Query: 62 MPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 274
MPKQI DIRDFLQKARR+DA+SVKIK K KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K +
Sbjct: 1 MPKQITDIRDFLQKARRKDARSVKIK--KTPQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_E-fasciculatus_F_contig1148.1193.1 vs. uniprot
Match: M4BFU5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFU5_HYAAE) HSP 1 Score: 107 bits (266), Expect = 1.530e-25 Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 2
Query: 62 MPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 274
MPKQI DIRDFLQKARR+DA+SVKIK K+ KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K +
Sbjct: 20 MPKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 88
BLAST of mRNA_E-fasciculatus_F_contig1148.1193.1 vs. uniprot
Match: A0A1E7ETU4_9STRA (Ribosomal protein L38 n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7ETU4_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.770e-25 Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 2
Query: 62 MPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 274
MPKQI DIRDFLQKARR DAK VKIK K TKFKIRCSR+LYTLCVTD EKADKLTQSLPPGL +K +
Sbjct: 1 MPKQITDIRDFLQKARRSDAKLVKIK--KRDSQTKFKIRCSRFLYTLCVTDAEKADKLTQSLPPGLQRKSI 69
BLAST of mRNA_E-fasciculatus_F_contig1148.1193.1 vs. uniprot
Match: F0Y0E5_AURAN (Ribosomal protein L38 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0E5_AURAN) HSP 1 Score: 104 bits (260), Expect = 6.840e-25 Identity = 55/71 (77.46%), Postives = 59/71 (83.10%), Query Frame = 2
Query: 62 MPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 274
MPK+I DIRDFLQKARRRDAKSVKIK K KFKIRCSRYLYTL V+D EKADKLTQSLPPGL +K +
Sbjct: 1 MPKEISDIRDFLQKARRRDAKSVKIKKTKGV--VKFKIRCSRYLYTLRVSDTEKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_E-fasciculatus_F_contig1148.1193.1 vs. uniprot
Match: RL38_BRABE (60S ribosomal protein L38 n=5 Tax=Eumetazoa TaxID=6072 RepID=RL38_BRABE) HSP 1 Score: 103 bits (258), Expect = 1.380e-24 Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 2
Query: 62 MPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQLQ 277
MPKQIH+I+DFL ARR+DAKSVKIK NK + KFK+RCSRYLYTL +TDKEKADKL QSLPPGL K+L+
Sbjct: 1 MPKQIHEIKDFLLTARRKDAKSVKIKKNK--DNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKELK 70
BLAST of mRNA_E-fasciculatus_F_contig1148.1193.1 vs. uniprot
Match: A0A0P1ACU3_PLAHL (60s ribosomal protein l38 n=10 Tax=Oomycota TaxID=4762 RepID=A0A0P1ACU3_PLAHL) HSP 1 Score: 103 bits (258), Expect = 1.930e-24 Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 2
Query: 62 MPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGL 259
MPKQI DIRDFLQKARR+DA+SVKIK K+ KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL
Sbjct: 1 MPKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGL 64 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1148.1193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1148.1193.1 >prot_E-fasciculatus_F_contig1148.1193.1 ID=prot_E-fasciculatus_F_contig1148.1193.1|Name=mRNA_E-fasciculatus_F_contig1148.1193.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=153bp SGSSSSSSSKRCITSSSRSHHAEANPRHQGLPAEGSPPRCQVGEDQEQQGback to top mRNA from alignment at E-fasciculatus_F_contig1148:3426..7877- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1148.1193.1 ID=mRNA_E-fasciculatus_F_contig1148.1193.1|Name=mRNA_E-fasciculatus_F_contig1148.1193.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4452bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1148:3426..7877- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1148:3426..7877- >mRNA_E-fasciculatus_F_contig1148.1193.1 ID=mRNA_E-fasciculatus_F_contig1148.1193.1|Name=mRNA_E-fasciculatus_F_contig1148.1193.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=918bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1148:3426..7877- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |