mRNA_E-fasciculatus_F_contig11456.1173.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11456.1173.1
Unique NamemRNA_E-fasciculatus_F_contig11456.1173.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11456.1173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11456contigE-fasciculatus_F_contig11456:2647..4108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size650
Cds size498
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11456.1173.1prot_E-fasciculatus_F_contig11456.1173.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11456 2797..4108 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927658.33165-UTR-E-fasciculatus_F_contig11456:2646..27961622927658.33165-UTR-E-fasciculatus_F_contig11456:2646..2796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11456 2647..2796 +
1695995637.7828314-UTR-E-fasciculatus_F_contig11456:2646..27961695995637.7828314-UTR-E-fasciculatus_F_contig11456:2646..2796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11456 2647..2796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927658.3477895-CDS-E-fasciculatus_F_contig11456:2796..28131622927658.3477895-CDS-E-fasciculatus_F_contig11456:2796..2813Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11456 2797..2813 +
1695995637.7930691-CDS-E-fasciculatus_F_contig11456:2796..28131695995637.7930691-CDS-E-fasciculatus_F_contig11456:2796..2813Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11456 2797..2813 +
1622927658.3609185-CDS-E-fasciculatus_F_contig11456:3627..41081622927658.3609185-CDS-E-fasciculatus_F_contig11456:3627..4108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11456 3628..4108 +
1695995637.8022661-CDS-E-fasciculatus_F_contig11456:3627..41081695995637.8022661-CDS-E-fasciculatus_F_contig11456:3627..4108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11456 3628..4108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11456.1173.1

>prot_E-fasciculatus_F_contig11456.1173.1 ID=prot_E-fasciculatus_F_contig11456.1173.1|Name=mRNA_E-fasciculatus_F_contig11456.1173.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=166bp
MQKSITSFFGGPKDGAAGPPSPPKPRPPSAKPSPKAKKPKAAKKAAKPAA
AKKPRRIVDGGGEEDKTASAPPAPPASTSSIEEKGDGESSPSPEKETEVA
AGKRKQAAGEEGGEEKAAAAAASGPRGGEAGEEEDEPEGGEDAPAQKKPR
RLRRLAEKKANAAAED
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mRNA from alignment at E-fasciculatus_F_contig11456:2647..4108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11456.1173.1 ID=mRNA_E-fasciculatus_F_contig11456.1173.1|Name=mRNA_E-fasciculatus_F_contig11456.1173.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11456:2647..4108+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAGCGCGAGCGCGAGGCAGCAACAACAACACAGACAACGAGAGACCGA
GCGCAGCACCTGGAGAGCGGCCTCCCAGATATCCCAGCCGGGTGACTTGT
GAAAGGATCTAGGACGGAATCCGCTTGAATCCGCGAACGACGAGCAACCC
ATGCAGAAGTCAATCACGTGAGCTTTGATGGATCCCTCTATATTTGATTT
TGAAATTGGCATCTGGGCAGCAACAACGGCGTCTTTCCAGTTCTCTTCCT
GTCGTGTGATCGACGCGTAGTTCCCTCGCCCGTTCCCTTTGCTCAACCAG
ATAAGTGGCCGCTCTATCGTACCATACGCTGGCTGTACATGGTTCCCAAG
CCGAAATCGCCAACGTGCTTCGGTACCTGACTGAACTGCGGCTCCAAGCA
CGAGCGTTTTTTTTTTTTGAAAAGTTCAAATTCGCTCGCTGGTAAGTCCG
ATCCCCGATAAGAGAGACAAGAGTGAGAGCTCACAACCTACCAGTCCTGG
TGTGGTAGTCGAGGACAGGTGAACAATTTGGGGTCATTGAGGAACCCTCG
TATTGCTTTCGTTGCCGAGGGTGGGAGCTTGAGACGTTGACATGTTGACG
CGGGGAAATGAGTGTGCATGGAATTCTGGGAGTTGCGCGAATTCGCGGTC
GGTCATGTTTGCACTGAGAAAATAGAGTGTGCGAAGCTTCAAGCAGCGGT
AATTCAGCACCGTCTGCATAGCACCAACAATGTGGAGCGTGTCGCGGTAA
AGCGGTGTTTAGCAATGTCATAACCCCTCGGTGTCATAGTTATGGTATCA
TCTAAGCGCAGGAAATACCCATCAACAGTTGAAGCAACGACAGCAACACC
ACAATAGTGATACGTCCCGCTTCCGCTCGTCGGAAGACATTCCGCTCTCA
AGTCCCCTCTTTACAACGCCGCCGCCCGGTTCGGTTCTCCTCCCACCACG
TCCGGTGCCCAACGCCTGTCCCTCCACGAAGCTCATTTTTCGGAGGGCCG
AAAGACGGGGCGGCAGGCCCGCCTTCCCCCCCCAAGCCGCGCCCGCCTTC
TGCCAAACCCTCGCCTAAGGCCAAGAAGCCGAAGGCAGCCAAGAAGGCCG
CCAAACCCGCCGCCGCCAAGAAACCGAGGCGCATTGTCGACGGCGGCGGT
GAGGAGGACAAGACGGCATCGGCGCCGCCCGCCCCCCCGGCCTCGACCAG
CAGCATCGAGGAGAAGGGCGACGGGGAGAGCAGCCCCTCCCCGGAGAAGG
AGACGGAAGTAGCCGCCGGAAAGCGGAAGCAGGCCGCGGGAGAGGAGGGC
GGAGAGGAGAAGGCGGCAGCGGCAGCGGCATCGGGACCCCGAGGCGGGGA
GGCCGGGGAGGAGGAGGACGAGCCGGAGGGGGGGGAGGATGCACCGGCCC
AGAAGAAGCCGAGGAGGTTGCGCCGCCTCGCCGAGAAGAAGGCCAACGCC
GCTGCGGAGGAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11456:2647..4108+

>mRNA_E-fasciculatus_F_contig11456.1173.1 ID=mRNA_E-fasciculatus_F_contig11456.1173.1|Name=mRNA_E-fasciculatus_F_contig11456.1173.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=996bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11456:2647..4108+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGAAGTCAATCACATGCAGAAGTCAATCACCTCATTTTTCGGAGGG
CCGAAAGACGGGGCGGCAGGCCCGCCTTCCCCCCCCAAGCCGCGCCCGCC
TTCTGCCAAACCCTCGCCTAAGGCCAAGAAGCCGAAGGCAGCCAAGAAGG
CCGCCAAACCCGCCGCCGCCAAGAAACCGAGGCGCATTGTCGACGGCGGC
GGTGAGGAGGACAAGACGGCATCGGCGCCGCCCGCCCCCCCGGCCTCGAC
CAGCAGCATCGAGGAGAAGGGCGACGGGGAGAGCAGCCCCTCCCCGGAGA
AGGAGACGGAAGTAGCCGCCGGAAAGCGGAAGCAGGCCGCGGGAGAGGAG
GGCGGAGAGGAGAAGGCGGCAGCGGCAGCGGCATCGGGACCCCGAGGCGG
GGAGGCCGGGGAGGAGGAGGACGAGCCGGAGGGGGGGGAGGATGCACCGG
CCCAGAAGAAGCCGAGGAGGTTGCGCCGCCTCGCCGAGAAGAAGGCCAAC
GCCGCTGCGGAGGATCTCATTTTTCGGAGGGCCGAAAGACGGGGCGGCAG
GCCCGCCTTCCCCCCCCAAGCCGCGCCCGCCTTCTGCCAAACCCTCGCCT
AAGGCCAAGAAGCCGAAGGCAGCCAAGAAGGCCGCCAAACCCGCCGCCGC
CAAGAAACCGAGGCGCATTGTCGACGGCGGCGGTGAGGAGGACAAGACGG
CATCGGCGCCGCCCGCCCCCCCGGCCTCGACCAGCAGCATCGAGGAGAAG
GGCGACGGGGAGAGCAGCCCCTCCCCGGAGAAGGAGACGGAAGTAGCCGC
CGGAAAGCGGAAGCAGGCCGCGGGAGAGGAGGGCGGAGAGGAGAAGGCGG
CAGCGGCAGCGGCATCGGGACCCCGAGGCGGGGAGGCCGGGGAGGAGGAG
GACGAGCCGGAGGGGGGGGAGGATGCACCGGCCCAGAAGAAGCCGAGGAG
GTTGCGCCGCCTCGCCGAGAAGAAGGCCAACGCCGCTGCGGAGGAT
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