mRNA_E-fasciculatus_F_contig11434.1158.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11434.1158.1
Unique NamemRNA_E-fasciculatus_F_contig11434.1158.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11434.1158.1 vs. uniprot
Match: A0A6H5JFR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR6_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.500e-62
Identity = 151/296 (51.01%), Postives = 154/296 (52.03%), Query Frame = 1 
Query:    1 MRFAAAGASATLVLGALAPPARAFVAQAPTGGATRFSRSSGGDVLVAGRRASVGRRPSEMAAATKMAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQ--------------------------------------------------------------------------------------------------------------------------------------PEDAASKRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEE 486
            MRFAAA ASATL L  LAP A+AFVAQAP GGATRFSRSSGGDVLVA RRASVGRR SE+AAATKMAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQ                                                                                                                                      PEDAA+KRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEE
Sbjct:    1 MRFAAA-ASATLALATLAPTAQAFVAQAPAGGATRFSRSSGGDVLVARRRASVGRRRSELAAATKMAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQLLGAKVVIGSSDGGPDAEEAPPGLADEVVSALPASTEYLIWVDSPEARAAAKAAKLEIGVLGSLLGGGFKESLEAVRSVEGGVRPVVVHAGRLFGAAGGDEPVPFLTGPKAEPVLDESITRQAVLVGPGTVLSSPEDAATKRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEE 295
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11434.1158.1 vs. uniprot
Match: D7FWZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ9_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.960e-53
Identity = 95/97 (97.94%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:  196 MAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQPEDAASKRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEE 486
            MAIAGPGDDAKV+VCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQPEDAA+KRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEE
Sbjct:    1 MAIAGPGDDAKVMVCGPPGGIAGLIAGRLTAAGGIREVVLADETETLEQQPEDAATKRASVAEAIERLINGSERKRGLELSVVSVDGFATTDEEWEE 97
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11434.1158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFR6_9PHAE1.500e-6251.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWZ9_ECTSI1.960e-5397.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11434contigE-fasciculatus_F_contig11434:164..3911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue7.4e-43
Seed eggNOG ortholog2880.D7FWZ9
EggNOG OGs2BY4X@1,2SKQ1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_003740.1
Exons3
Model size486
Cds size486
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11434.1158.1prot_E-fasciculatus_F_contig11434.1158.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11434 164..3911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927656.9444199-CDS-E-fasciculatus_F_contig11434:163..3041622927656.9444199-CDS-E-fasciculatus_F_contig11434:163..304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11434 164..304 -
1695995637.2031305-CDS-E-fasciculatus_F_contig11434:163..3041695995637.2031305-CDS-E-fasciculatus_F_contig11434:163..304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11434 164..304 -
1622927656.9614413-CDS-E-fasciculatus_F_contig11434:2312..24931622927656.9614413-CDS-E-fasciculatus_F_contig11434:2312..2493Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11434 2313..2493 -
1695995637.214823-CDS-E-fasciculatus_F_contig11434:2312..24931695995637.214823-CDS-E-fasciculatus_F_contig11434:2312..2493Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11434 2313..2493 -
1622927656.9718409-CDS-E-fasciculatus_F_contig11434:3747..39111622927656.9718409-CDS-E-fasciculatus_F_contig11434:3747..3911Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11434 3748..3911 -
1695995637.2263634-CDS-E-fasciculatus_F_contig11434:3747..39111695995637.2263634-CDS-E-fasciculatus_F_contig11434:3747..3911Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11434 3748..3911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11434.1158.1

>prot_E-fasciculatus_F_contig11434.1158.1 ID=prot_E-fasciculatus_F_contig11434.1158.1|Name=mRNA_E-fasciculatus_F_contig11434.1158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=162bp
MRFAAAGASATLVLGALAPPARAFVAQAPTGGATRFSRSSGGDVLVAGRR
ASVGRRPSEMAAATKMAIAGPGDDAKVVVCGPPGGIAGLIAGRLTAAGGI
REVVLADETETLEQQPEDAASKRASVAEAIERLINGSERKRGLELSVVSV
DGFATTDEEWEE
back to top

mRNA from alignment at E-fasciculatus_F_contig11434:164..3911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11434.1158.1 ID=mRNA_E-fasciculatus_F_contig11434.1158.1|Name=mRNA_E-fasciculatus_F_contig11434.1158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3748bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11434:164..3911- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGTTCGCTGCCGCCGGTGCCAGCGCGACACTGGTCCTCGGCGCATT
GGCACCACCGGCGCGAGCCTTCGTGGCGCAGGCTCCGACGGGAGGTGCCA
CGAGATTCTCACGGAGCAGTGGCGGCGATGTGTTGGTGGCAGGGAGGAGG
GCGAGCGTCGGCAGGTGGGTGGGTGTGTGTGTGTGCTGCCAACATGAGTC
GGTGCTGTTGCTGCTGCTGCTGCACAAGAGCTGCAAAACATGCACGCCCC
CCCCTGTGGCTAACACGAAGACTCTGCATGCTTGGCGTAGTCCAGCAGCG
AGGCCCGAGACTCGTGCCTTGTTTCTGTAATGACCAGCAGATGTTCTCCA
ATGCGTCCGGGCGAGCGGGTTGAGCTACCTCTGCGATATTTGAGTATCCA
TAGGTTTCAATTGGCACACGGCACACATGCATGTTCCCGACGAGAAAAAG
CGGCGCAACCGCCTCCAACACCCCCACACGCTCCTCCTGCTAACGCGCAC
AACTTCTCCGCCGCACGGCACGGCACTGGCACTTCCTATAATCATATGTT
AGGCCCGTGAGGGTCGTAGTACTTCGGTCCCGCTGCTTCTCTTGTTTCCG
CTAGTCCAGATTTTTCCTTCAATCGCTTTCGTCCCATCTCAACACTACTA
CATACTGCTGTGTGTTTGTAGCTGCTCTGCATGACGTGTCCGCTGTACAG
CAGTAGTTTGTAGATACAGACTTTGGGCGTGTGCCCGAGGCCCTCGAGGT
TGCAGAGAGGCGACTCGGCGACTTGCTGTTTGCGGGGCAGATCGTCCTCT
CTCGTGAGCGTTGGTGACGCGTGGGGTGGCGCAGCCACGCGCAGCGTGTT
TGGACCCGCAGGTAGTGTATCCGCGCGCGGAGTCTTTGCAGCACAGCAGT
TCGAAAGCTGCGCCGCCTGTAGCAGCAGCATCAGCCCCGGTGGCCTTCTG
CTCGCGATCGCGCTGTTCTATACTACAAGATTAGAGAGAGAGGGGGGGGG
GGGGGCGTGTGTGCGCCGTTCCAGTGTAATCATAGTGGTTGCATGCCGAA
GGACCGACGGTGCCCCACGAGACCCAACACCTTCGTCGACTGTGACCTAT
GCAAACGACAGCCGTGGTGTCGTACATGCAAACCAATCACGCTAAGAAGG
AATAGCGCGCACCCGAATGCCTCAGTAACAAGAAAACCGATCCGCCAAAG
ACAAAAAAAACGTTCTGCCCAAAACACCCATCATAATTTAATTAAAAAAA
AAAAAAAGCTTCAATTGAGTCTGTGGAGTTAAATAGTGGAAAGACGCTTC
TATGGAGGACGCAACAATATATATCAAATACGGTGTGCGTCCTTACGTAG
AGGTTCGACTGTTCTCAACTCGAGAGGGTGTTGTTTCACCCCCACCCGCC
CCCCACCCCCGTGGATAGGAGACCGTCTGAGATGGCGGCGGCAACGAAGA
TGGCGATAGCCGGGCCTGGAGACGACGCCAAGGTCGTGGTGTGCGGCCCT
CCTGGCGGCATCGCGGGCCTGATCGCCGGCAGGCTCACGGCGGCGGGTGG
GATAAGGGAGGTCGTCCTCGCCGACGAGACCGAGACCTTGGAGCAGCAGG
TGGGGGCGGCGCGTGCCGTGGGCCTGAGCCCTGTGGGCTTGTCGAGGGGG
CGTACTCTTATGTGTTTGCATGCCGTTAGCTTTTAGATCGTGCACCACGC
GTCCTCAAGAGAACCGGGGCATTGGAGTACTGTAGGTGTGGTTTGCGTGT
TGCTGTTCCTGTTGACATCGGTCGGGCCAACCATGAACATCTACAGGCCT
TTGACAGCAGTACTATACATGCATTCATGTTTCTCCAAGGTGAGCGCAGG
GAGACGAAGTTTCCTAGCTTCCAGCCCTCGTGTCGGAGGTGAACCGCGAA
CCTGGTCCTACCGCTCCACCGGTACCCCGTGTGGCATACCAACGTTTGTG
CCCGGAGCAAGGGGAAAGTTCCGAGCTTTGTATACGCTCCCCTCTTTCTT
TCCGCCGTCCTGCTTTTTTTCTTGGCGTATTTGTCCTCTTGGTCTTCTTT
TTTTTTCCCCATGACTGCCTCTCTCTCTGTCTGTCTGTCTGTCTGCCTCC
CTCTCTGCCGCCTTCTAACCGTTGCCCGTCTATTTTCTTCCCCTCTCTGT
CCGTCCGTTTTGTCTGTCTGCCTATGAACCCACCGTTCGGGATATCAACG
CAAAACCCAACAATAACAACAACAAACAACCATACAAACCAACACACAGC
TCCTAGGCGCCAAGGTGGTGGTCGGATCGTCCGACGGGGGGCCCGGCGCA
GAGGAGGCCCCCCCCGGCCTCGCAGACGAGGTCGTTTCGGCGCTCCCCGC
CTCCACCGACTACCTCATCTGGGTTGACTCGCCCGAGGCAAGGGCGTCGG
CCAAGGTCGCCAAGCTCGAGATCGGCGTCCTCGGCAGCCTTCTGGGAGGA
GGGTTTAAGGTGGGGGGGGGGTGACGCCTAGAAGTTCTGGTCCGCGCACG
GTTTTTTGGTCAAGAAATGTGATCCAGACGGGAACACCGGCGCCGCAGTG
ACCGAGAGATAGCAGGGATGGGAAGGAAGGAAGAGCGGATATTACAGCGG
CTTGGGTTTTCAACGTGTTGCCGGGGGTGATGTGATGGTTTTCGCCCTTC
CGCGACTTGCCACCCGGCGTTTGACGATGCCCGATGCCTCCTTTGCTGTG
TGTATCGCTCGCGATACATGGGTCGCGCCACAAGCTGCGGCTGGTGGTAC
GGTATGGTATTGGTGCGGTACGGGTGTACTGCTGTGCCTGTTTCGTTATT
TCCCTGCTCTATGTGTACCACCAAGCGAATCGCTCCTCTCGCCTTTGTAT
GGTTGTTCTTGCTGTTGTTTCGCCTCCGTACAGGAGTCGCTGGAGGCGGT
GCGCAGCGTGGAGGGGGGCGTCAGGCCCGTGGTCGTCCACGCCGGCAGGC
TGTTCGGCGCCGCCGGGGGCGAGGAGCCCGTGCCCTTCCTCACCGGGCCC
AAGGCGGAGCCGGTTCTGGACGAGAGCATCACGAGGCAGGCGGTGCTGGT
GGGGCCAGGGACCGTGCTGTCGTCGGTGAGAGGATGGCTGATGGCTGGGT
GTAGGCATCATGCCCCTTCTTCCTCCACGGCGCCGCCCGTCAAGCAGACC
CCCACGTGCGATGTACCGCCACTCTGCTACAAAAGCGTGTTGTACATTTT
TGCTTTTTGCTTCGGTATTAGCGTAGAGGCTATGCGGCGGCCTTTTTTCT
CTCTCTCTCTCTCGGTGAGGTCAGTCTTTCCGCTGATGTACTGTTGAGTT
CATACCCTCCAGGGCGTTGGTCGTGTTTTGTTTTGTTTTTTTGTCTCCGT
CCTGTCCTCTTCTCCCGTCTCCCCCCAAGCCACCCTTGACTCTCGCTGCC
CCTTCCGCCCTTGTTCCTGCCTCGTACGATAATGTACGACCTTTGATTTC
TCGCGCTTACACTGGTACAACTCTTATTTCCTTCTCCCTACACCCCCCTT
CCTTAATTTCCTGCTGCCCCATTACCTTAGTTCTATAAACCATTCGTCTC
GCCTGGCACCCTCCCCCATCCAAACCCGTACGCGCCAAAACACAACAAAT
AAAACAGCCGGAGGACGCCGCCTCCAAGCGGGCGAGCGTCGCGGAAGCGA
TCGAGCGGCTCATCAACGGATCGGAGAGGAAGAGGGGGCTGGAGCTCTCT
GTGGTGAGCGTCGACGGCTTCGCGACCACGGACGAAGAGTGGGAAGAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11434:164..3911-

>mRNA_E-fasciculatus_F_contig11434.1158.1 ID=mRNA_E-fasciculatus_F_contig11434.1158.1|Name=mRNA_E-fasciculatus_F_contig11434.1158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=972bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11434:164..3911- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGTTCGCTGCCGCCGGTGCCAGCGCGACACTGGTCCTCGGCGCATT
GGCACCACCGGCGCGAGCCTTCGTGGCGCAGGCTCCGACGGGAGGTGCCA
CGAGATTCTCACGGAGCAGTGGCGGCGATGTGTTGGTGGCAGGGAGGAGG
GCGAGCGTCGGCAGATGCGGTTCGCTGCCGCCGGTGCCAGCGCGACACTG
GTCCTCGGCGCATTGGCACCACCGGCGCGAGCCTTCGTGGCGCAGGCTCC
GACGGGAGGTGCCACGAGATTCTCACGGAGCAGTGGCGGCGATGTGTTGG
TGGCAGGGAGGAGGGCGAGCGTCGGCAGGAGACCGTCTGAGATGGCGGCG
GCAACGAAGATGGCGATAGCCGGGCCTGGAGACGACGCCAAGGTCGTGGT
GTGCGGCCCTCCTGGCGGCATCGCGGGCCTGATCGCCGGCAGGCTCACGG
CGGCGGGTGGGATAAGGGAGGTCGTCCTCGCCGACGAGACCGAGACCTTG
GAGCAGCAGGAGACCGTCTGAGATGGCGGCGGCAACGAAGATGGCGATAG
CCGGGCCTGGAGACGACGCCAAGGTCGTGGTGTGCGGCCCTCCTGGCGGC
ATCGCGGGCCTGATCGCCGGCAGGCTCACGGCGGCGGGTGGGATAAGGGA
GGTCGTCCTCGCCGACGAGACCGAGACCTTGGAGCAGCAGCCGGAGGACG
CCGCCTCCAAGCGGGCGAGCGTCGCGGAAGCGATCGAGCGGCTCATCAAC
GGATCGGAGAGGAAGAGGGGGCTGGAGCTCTCTGTGGTGAGCGTCGACGG
CTTCGCGACCACGGACGAAGAGTGGGAAGAGCCGGAGGACGCCGCCTCCA
AGCGGGCGAGCGTCGCGGAAGCGATCGAGCGGCTCATCAACGGATCGGAG
AGGAAGAGGGGGCTGGAGCTCTCTGTGGTGAGCGTCGACGGCTTCGCGAC
CACGGACGAAGAGTGGGAAGAG
back to top