mRNA_E-fasciculatus_F_contig11426.1149.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11426.1149.1
Unique NamemRNA_E-fasciculatus_F_contig11426.1149.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11426.1149.1 vs. uniprot
Match: D8LJ52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ52_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.460e-47
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 2 
Query:    2 LAGHLRGQGFVVVASGPVADGRTKIYACARGIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA 250
            LAGHLRGQGFVVVASGPVADGRTKIYACARGIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA
Sbjct: 1027 LAGHLRGQGFVVVASGPVADGRTKIYACARGIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA 1109
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BLAST of mRNA_E-fasciculatus_F_contig11426.1149.1 vs. uniprot
Match: A0A6H5KY58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY58_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.580e-45
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 2 
Query:    2 LAGHLRGQGFVVVASGPVADGRTKIYACARGIGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA 250
            LAGHLR QGFVVVASGP+ADGRT IYACARG+GVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA
Sbjct:  658 LAGHLRVQGFVVVASGPLADGRTSIYACARGMGVEALFFAELVFEKEMHELAFTFKCQDERLTSRFVCHMHLRRVIGDHQPIA 740
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11426.1149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ52_ECTSI1.460e-47100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY58_9PHAE3.580e-4595.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11426contigE-fasciculatus_F_contig11426:251..1140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size340
Cds size261
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11426.1149.1prot_E-fasciculatus_F_contig11426.1149.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11426 251..1061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927653.0731454-CDS-E-fasciculatus_F_contig11426:250..3771622927653.0731454-CDS-E-fasciculatus_F_contig11426:250..377Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11426 251..377 +
1695995636.680475-CDS-E-fasciculatus_F_contig11426:250..3771695995636.680475-CDS-E-fasciculatus_F_contig11426:250..377Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11426 251..377 +
1622927653.086765-CDS-E-fasciculatus_F_contig11426:927..10611622927653.086765-CDS-E-fasciculatus_F_contig11426:927..1061Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11426 928..1061 +
1695995636.6950154-CDS-E-fasciculatus_F_contig11426:927..10611695995636.6950154-CDS-E-fasciculatus_F_contig11426:927..1061Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11426 928..1061 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927653.1015935-UTR-E-fasciculatus_F_contig11426:1061..11401622927653.1015935-UTR-E-fasciculatus_F_contig11426:1061..1140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11426 1062..1140 +
1695995636.7077394-UTR-E-fasciculatus_F_contig11426:1061..11401695995636.7077394-UTR-E-fasciculatus_F_contig11426:1061..1140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11426 1062..1140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11426.1149.1

>prot_E-fasciculatus_F_contig11426.1149.1 ID=prot_E-fasciculatus_F_contig11426.1149.1|Name=mRNA_E-fasciculatus_F_contig11426.1149.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=87bp
PGWAPSGSGVRRGCVGASCGRPHQDLRVRPRDRGGSALLRRAGIREGNAR
AGIHVQVSGRTPDVAVRVPHAPASGYRRPSADRLIR*
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mRNA from alignment at E-fasciculatus_F_contig11426:251..1140+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11426.1149.1 ID=mRNA_E-fasciculatus_F_contig11426.1149.1|Name=mRNA_E-fasciculatus_F_contig11426.1149.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=890bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11426:251..1140+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTGGCTGGGCACCTTCGGGGTCAGGGGTTCGTCGTGGTTGCGTCGGGGC
CAGTTGCGGACGGCCGCACCAAGATTTACGCGTGCGCCCGCGGGATCGGG
GTGGAAGCGCTCTTCTTCGCAGAGCTGGTGCGTTTTGTCTACTTTCGCGC
TAAGACTTCCCGCTGCTTTTCCTCTAATGGCTCTTGCTCTCTGTTCCTTC
ACCGAGCCTGCCTTTGCTCCTCTCGCGTGTTCCACCTCTAGTCGATATGC
TCGTCCTCCGCACTGCATGTTTCACGCAAACACGCCTCTACCCCATTCTT
TGTTCATGTCCGCTCACAAGTTGAGAATGGAAACACAAACATAGGGCAGT
TATGTACATAGAACCCGCAAGCAGCGGGAGCAGAGAAAGAGAAGGAAGGA
GGAGCCAGGGAACACGCAACCCTCGCGCCCGATCCCACCTCAAAACTGTC
TATATTGGAAGATAATGCAGAACGTACTACGTATGTATGTTGTGAGCGTT
AGGTGTTGGCGGTGTCTGTGTAGGAAAAACCTTCCATCACGAAAGGGATG
CATGGCCCATGGTCAATTGACTCTTGTTGAATGAAGATCGGCAATAATAC
GTTACGTGCCTACACTCCCTACACCCCCCGACCCCCCCCTGATCGCCATG
GAATAACGCCGAATGCGGATTGCTCAGGTATTCGAGAAGGAAATGCACGA
GCTGGCATTCACGTTCAAGTGTCAGGACGAACGCCTGACGTCGCGGTTCG
TGTGCCACATGCACCTGCGTCGGGTTATCGGCGACCATCAGCCGATCGCT
TAATTCGATGAGATGTCAACACAACTTGCAGCACTGGCCGCTCAATCGGG
AGTTGCTTTGCCTGTTGAAGGCGGGAGGAGAATTGAACGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11426:251..1140+

>mRNA_E-fasciculatus_F_contig11426.1149.1 ID=mRNA_E-fasciculatus_F_contig11426.1149.1|Name=mRNA_E-fasciculatus_F_contig11426.1149.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11426:251..1140+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTGGCTGGGCACCTTCGGGGTCAGGGGTTCGTCGTGGTTGCGTCGGGGC
CAGTTGCGGACGGCCGCACCAAGATTTACGCGTGCGCCCGCGGGATCGGG
GTGGAAGCGCTCTTCTTCGCAGAGCTGCCTGGCTGGGCACCTTCGGGGTC
AGGGGTTCGTCGTGGTTGCGTCGGGGCCAGTTGCGGACGGCCGCACCAAG
ATTTACGCGTGCGCCCGCGGGATCGGGGTGGAAGCGCTCTTCTTCGCAGA
GCTGGTATTCGAGAAGGAAATGCACGAGCTGGCATTCACGTTCAAGTGTC
AGGACGAACGCCTGACGTCGCGGTTCGTGTGCCACATGCACCTGCGTCGG
GTTATCGGCGACCATCAGCCGATCGCTTAATTCGATGAGTATTCGAGAAG
GAAATGCACGAGCTGGCATTCACGTTCAAGTGTCAGGACGAACGCCTGAC
GTCGCGGTTCGTGTGCCACATGCACCTGCGTCGGGTTATCGGCGACCATC
AGCCGATCGCTTAATTCGATGA
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