mRNA_E-fasciculatus_F_contig11401.1136.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11401.1136.1
Unique NamemRNA_E-fasciculatus_F_contig11401.1136.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig11401.1136.1 vs. uniprot
Match: D8LIC2_ECTSI (Eukaryotic initiation factor eIF3 i subunit p36 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC2_ECTSI)

HSP 1 Score: 394 bits (1011), Expect = 3.300e-137
Identity = 193/198 (97.47%), Postives = 195/198 (98.48%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPPKMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQVRLVQGRSSGV 597
            RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPPKMKATKVVWGALNEKLIV+YADGTIRTFDP+DGTELEYAQV   QGRSSGV
Sbjct:    2 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPPKMKATKVVWGALNEKLIVAYADGTIRTFDPFDGTELEYAQVGTRQGRSSGV 199          
BLAST of mRNA_E-fasciculatus_F_contig11401.1136.1 vs. uniprot
Match: A0A6H5KMX5_9PHAE (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMX5_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 8.110e-100
Identity = 152/188 (80.85%), Postives = 155/188 (82.45%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPPKMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQV 567
            RPILLKGHERAITCVVYNNDGDLVFTA+KDQIPSLWYAKTGERIGTYQGHQG                               RELVVYNHMGPVRSV+FAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQL+KIA LEIDLPPKMKAT VVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQV
Sbjct:    2 RPILLKGHERAITCVVYNNDGDLVFTASKDQIPSLWYAKTGERIGTYQGHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELVVYNHMGPVRSVAFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLDKIASLEIDLPPKMKATTVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQV 189          
BLAST of mRNA_E-fasciculatus_F_contig11401.1136.1 vs. uniprot
Match: A0A835ZF13_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF13_9STRA)

HSP 1 Score: 247 bits (631), Expect = 1.370e-78
Identity = 113/180 (62.78%), Postives = 139/180 (77.22%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPPKMKATKVVWGALNEKLIVSYADGTIRTFDPYDG 543
            RPILLK HERAITCV+YN DGDLVFTAAKD +P++W A TGER+GTY GH GAVW+LS  WDS  +LSASADA+ R+WDVQTG  LV Y H GPVRSV +AEGGQ+F + S PF DSPG IS+++ P DV   Q +++A  EI +P K K T+V+W ALN++++ S+ DGTIR FDP  G
Sbjct:    2 RPILLKSHERAITCVIYNADGDLVFTAAKDNVPTVWRADTGERLGTYIGHSGAVWELSCRWDSKYLLSASADATVRLWDVQTGESLVSYPHRGPVRSVCWAEGGQKFVSASQPFMDSPGFISIYDTPSDVDPSQYQQVASREISIPNKEKCTEVLWSALNDRILASFEDGTIRVFDPETG 181          
BLAST of mRNA_E-fasciculatus_F_contig11401.1136.1 vs. uniprot
Match: A0A6V2RRW4_HETAK (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2RRW4_HETAK)

HSP 1 Score: 218 bits (555), Expect = 3.830e-67
Identity = 104/183 (56.83%), Postives = 135/183 (73.77%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPPKMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTEL 552
            RPILLKGHER+IT V+YN DGDL+FTA+KD +PS+WY++ GERIGTY GH GAVWDL  SWDSTR+LS SADA+ +MWDV+TG E   +NH GPVRSV +AEG Q F +VSDPF +SP  +SV++ PDD   +Q+EKI  LEI L  K       +   N++++V+  DG+IR +D   G ++
Sbjct:    2 RPILLKGHERSITKVLYNRDGDLIFTASKDSVPSVWYSENGERIGTYHGHVGAVWDLDCSWDSTRLLSGSADATVKMWDVETGVETCTFNHKGPVRSVRWAEGCQAFVSVSDPFMESPPFVSVYDCPDDADPEQIEKIPRLEIQL-DKKSTGGAHFIKENKEILVAMEDGSIRIYDAETGEQI 183          
BLAST of mRNA_E-fasciculatus_F_contig11401.1136.1 vs. uniprot
Match: A0A7S1TX14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TX14_9STRA)

HSP 1 Score: 205 bits (521), Expect = 3.990e-63
Identity = 95/184 (51.63%), Postives = 135/184 (73.37%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPPKMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELE 555
            RPILLKGHERA+T V+YN DGDL+F+A+KD  P++WYA TG R+GT+ GHQG VWDL V+ DS+R+L+ASADA+ R+WDV+TGREL  Y H GPVR+V++AEGG+ FAT ++PF   PG ++V+  P       L  I     ++PP+++A ++VW   N++L+++Y DG++   D   G EL+
Sbjct:   30 RPILLKGHERALTKVMYNKDGDLLFSASKDNKPTVWYADTGVRLGTFNGHQGTVWDLDVTHDSSRLLTASADATVRLWDVRTGRELANYTHRGPVRAVAWAEGGEYFATAAEPFGRYPGQVAVYYCPAGAEEYDLLPIEGRMFEIPPEVRAAQLVWLNNNKELLIAYDDGSLHILDAEFGEELQ 213          
BLAST of mRNA_E-fasciculatus_F_contig11401.1136.1 vs. uniprot
Match: A0A7R9YCC7_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCC7_9STRA)

HSP 1 Score: 207 bits (526), Expect = 3.880e-62
Identity = 97/183 (53.01%), Postives = 136/183 (74.32%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPPKMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTEL 552
            RPILLKGHERA+T V YN DGDL+F+AAKD  P++WYA TG R+GT+ GHQGAVWDL VS+DS+R+L+ASADA+ R+W+V+TGREL  Y+H GPVR+V++AEG Q FAT ++PF   PG I+V+  P D        I     ++PP+++A+++ W   N++++++Y DG++R  D   G EL
Sbjct:   40 RPILLKGHERALTRVKYNADGDLLFSAAKDPKPTVWYADTGVRLGTFNGHQGAVWDLDVSYDSSRLLTASADATVRLWEVRTGRELCQYDHSGPVRAVAWAEGCQYFATAAEPFGKHPGQIAVYYCPSDAEEYDQLPIENRVFEIPPEVRASQIAWLNNNKEILIAYDDGSLRILDAEYGDEL 222          
BLAST of mRNA_E-fasciculatus_F_contig11401.1136.1 vs. uniprot
Match: A0A7S2NVM0_9STRA (Eukaryotic translation initiation factor 3 subunit I n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVM0_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.430e-59
Identity = 98/192 (51.04%), Postives = 129/192 (67.19%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPPKMK-----ATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQ 564
            RPILLKGHER+IT V YN DGDL+FTA+KD +PS+W A+ G R+GT+ GH+G +WDL     +T +LSASAD + ++W +  G+ +  Y H GPVR V++A GGQ FAT+SDPF + PG ISVF  P     +Q  +   LEI+LP   K     AT VVW  LNE + V++ +G IR +DP +G ELE  Q
Sbjct:    2 RPILLKGHERSITVVKYNRDGDLLFTASKDHVPSVWRAEDGSRLGTFNGHKGTIWDLDSDSTTTYLLSASADTTVKLWSICDGQIIRDYPHRGPVRGVAWAAGGQMFATISDPFVEHPGYISVFAVPKSESPEQWSEKPILEIELPKNNKGQRVNATNVVWLNLNEAIFVTFDNGCIRLYDPENGEELEEIQ 193          
BLAST of mRNA_E-fasciculatus_F_contig11401.1136.1 vs. uniprot
Match: A0A1Z5K121_FISSO (Eukaryotic translation initiation factor 3 subunit I n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K121_FISSO)

HSP 1 Score: 198 bits (503), Expect = 3.260e-59
Identity = 97/184 (52.72%), Postives = 126/184 (68.48%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPP----KMKATKVVWGALNEKLIVSYADGTIRTFDPYDG 543
            RP LL+GHER IT V +N+DGDL+FTA+KD +PS+W  + GER+GTY GH+G VWDL     + R+L+ASAD S R+WDV+TG  + V+NH GPVR V++AEG Q F T+SDPF D P  I VF+AP+D           LEI+LP      +K T V W ALNE L+V++ +G IR +DP  G
Sbjct:    2 RPYLLQGHERPITTVQFNHDGDLLFTASKDLVPSVWRVENGERLGTYNGHKGTVWDLDCDRFTKRLLTASADTSCRLWDVRTGECIFVFNHKGPVRGVAWAEGSQMFVTISDPFVDHPAKICVFDAPEDQDPSTYTDPPRLEIELPKINGKVVKPTHVHWTALNEDLLVAFDNGQIRLYDPETG 185          
BLAST of mRNA_E-fasciculatus_F_contig11401.1136.1 vs. uniprot
Match: A0A7S3L4V7_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4V7_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.070e-52
Identity = 86/184 (46.74%), Postives = 122/184 (66.30%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPP----KMKATKVVWGALNEKLIVSYADGTIRTFDPYDG 543
            RP LL+GHER IT + +N DGDL+FTA+KD +PS+W+   G+R+GTY GH+G VWDLS    S R+L+ASAD + R+W+VQTG  +  + H GPVR V +AEG Q+F T++D F D P  ISV++ P+    +       L IDLP     ++  T V W A+NE ++V++ +G I+ +DP  G
Sbjct:    2 RPYLLQGHERPITSIEFNYDGDLLFTASKDHVPSVWWVDGGKRLGTYTGHKGTVWDLSCDRFSRRLLTASADTTCRLWNVQTGECIRHFTHTGPVRGVEWAEGSQKFVTINDSFMDHPPKISVYDVPEGQDPESYSDEPSLVIDLPKHATKRVAPTNVKWTAMNEDILVAFDNGMIKLYDPETG 185          
BLAST of mRNA_E-fasciculatus_F_contig11401.1136.1 vs. uniprot
Match: A0A7S2I6P0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I6P0_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.220e-51
Identity = 86/189 (45.50%), Postives = 119/189 (62.96%), Query Frame = 1
Query:    4 RPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQGHQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPP-----KMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELE 555
            RPILLKGHER+IT V YN DGDL+FTA+KD +PS+W A++G+R+GT+ GH+G +WDL V   STR+L+                 + V++H GPVR V++A+G   FAT+SDPF D    IS+++ P D      +    LEIDLP      ++  T +VW  LNE L V++ +G+IR +D   G ELE
Sbjct:    2 RPILLKGHERSITVVKYNYDGDLLFTASKDHVPSVWRAESGDRLGTFAGHKGTIWDLDVDRFSTRVLTXXXXXXXXXXXXXXXECIKVFSHRGPVRGVAWADGSNSFATISDPFVDHNAQISIYDVPQDESPSDYDDTPRLEIDLPKTNDGKRVNPTNIVWLNLNEALFVTFDNGSIRLYDTVTGDELE 190          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11401.1136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIC2_ECTSI3.300e-13797.47Eukaryotic initiation factor eIF3 i subunit p36 n=... [more]
A0A6H5KMX5_9PHAE8.110e-10080.85Eukaryotic translation initiation factor 3 subunit... [more]
A0A835ZF13_9STRA1.370e-7862.78Eukaryotic translation initiation factor 3 subunit... [more]
A0A6V2RRW4_HETAK3.830e-6756.83Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S1TX14_9STRA3.990e-6351.63Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9YCC7_9STRA3.880e-6253.01Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2NVM0_9STRA1.430e-5951.04Eukaryotic translation initiation factor 3 subunit... [more]
A0A1Z5K121_FISSO3.260e-5952.72Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S3L4V7_9STRA1.070e-5246.74Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2I6P0_9STRA2.220e-5145.50Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11401contigE-fasciculatus_F_contig11401:38..1387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score394.4
Seed ortholog evalue3.1e-107
Seed eggNOG ortholog2880.D8LIC2
Preferred nameTIF34
KEGG rclassRC00055,RC00523
KEGG koko:K03246,ko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,ko03013,map00970,map03013
KEGG ModuleM00359,M00360
GOsGO:0000151,GO:0001525,GO:0001568,GO:0001732,GO:0001889,GO:0001944,GO:0002040,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009628,GO:0009651,GO:0009653,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010494,GO:0016043,GO:0016282,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034399,GO:0034622,GO:0034641,GO:0034645,GO:0035239,GO:0035295,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048513,GO:0048514,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0051716,GO:0061008,GO:0065003,GO:0070013,GO:0070887,GO:0070993,GO:0071214,GO:0071470,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0072358,GO:0072359,GO:0080008,GO:0097159,GO:0104004,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0643@1,KOG0643@2759
Ec32 ortholog descriptioneukaryotic initiation factor eIF3 i subunit p36
Ec32 orthologEc-24_001620.1
EC6.1.1.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016
Hectar predicted targeting categoryother localisation
Exons3
Model size597
Cds size597
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11401.1136.1prot_E-fasciculatus_F_contig11401.1136.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11401 38..1387 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927651.3304336-CDS-E-fasciculatus_F_contig11401:37..2281622927651.3304336-CDS-E-fasciculatus_F_contig11401:37..228Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11401 38..228 -
1695995635.8591552-CDS-E-fasciculatus_F_contig11401:37..2281695995635.8591552-CDS-E-fasciculatus_F_contig11401:37..228Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11401 38..228 -
1622927651.3417609-CDS-E-fasciculatus_F_contig11401:519..7411622927651.3417609-CDS-E-fasciculatus_F_contig11401:519..741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11401 520..741 -
1695995635.8732774-CDS-E-fasciculatus_F_contig11401:519..7411695995635.8732774-CDS-E-fasciculatus_F_contig11401:519..741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11401 520..741 -
1622927651.3560085-CDS-E-fasciculatus_F_contig11401:1203..13871622927651.3560085-CDS-E-fasciculatus_F_contig11401:1203..1387Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11401 1204..1387 -
1695995635.8830204-CDS-E-fasciculatus_F_contig11401:1203..13871695995635.8830204-CDS-E-fasciculatus_F_contig11401:1203..1387Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11401 1204..1387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11401.1136.1

>prot_E-fasciculatus_F_contig11401.1136.1 ID=prot_E-fasciculatus_F_contig11401.1136.1|Name=mRNA_E-fasciculatus_F_contig11401.1136.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=199bp
QRPILLKGHERAITCVVYNNDGDLVFTAAKDQIPSLWYAKTGERIGTYQG
HQGAVWDLSVSWDSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVS
FAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPPKM
KATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQVRLVQGRSSGV
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mRNA from alignment at E-fasciculatus_F_contig11401:38..1387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11401.1136.1 ID=mRNA_E-fasciculatus_F_contig11401.1136.1|Name=mRNA_E-fasciculatus_F_contig11401.1136.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1350bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11401:38..1387- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAGACCGATCCTCCTCAAGGGGCACGAGCGTGCCATCACGTGCGTGGT GTACAACAACGACGGGGATCTCGTTTTCACAGCGGCGAAGGACCAGATCC CGTCCCTCTGGTACGCCAAGACCGGGGAGCGGATCGGCACCTACCAGGGC CACCAGGGGGCGGTGTGGGACCTTTCGGTGTCATGTGAGTACAGTAGTCA GTCCTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCTATAG GGGTCGTTTAGGGTTGACGTCGTGTTTGGCGCCTTGTTGTCGTACATGAT CAGTGTTGCGATGATGGTCCAGGGGACCCGACGCACGTGGTCTGGGCTTC CATCTCTTTGCACGCACGGCCATGGGTGATTGCGATGGTGATCAAGGGTA TACGACAAGGGTGATCTCGGCTCTTACTTTGATTTCCTCTTGACGCATTC GTACCGTGCATGTTGATCTTGCCATGATTCTCTTAACACCTTCGTACCGT TCATGATGATCTTGCCATGACGGATCCACGGGATTCGTCGACAAAGATGG TCTCGGGGTTGGTTCTCGTCCGCTTTGGCGTACTTTCTTGTTCATGTTCT CTACACGCCTCTTCCCGTGCATGATGATCATGCAACGACAATCCAGGGGA TTCGACACGCATGCTCTCAGCTTCGGCGGACGCCTCGGCGCGCATGTGGG ACGTGCAGACCGGCCGAGAGCTGGTGGTGTACAACCACATGGGGCCGGTT CGATCGGTCTCCTTCGCGGAGGGGGGTCAGCGGTTCGCGACGGTGTCGGA CCCGTTCACGGACAGCCCCGGTCTCATCTCGGTCTTCGAGGCCCCGGATG ACGTGCCGACAGACCAGTGTAAGTATGTTATGTTTTGTTTTGGAGGGGGG GCGTACTCGTGTTTGGCATGCCTTGGTTGTCCGGTCATTGACTACGGGAC GGGGCATTGTTCCCGCAGAACCGATCTCCGATTGCCGATCGTTCCTTTGG GGGGGGGGTGGAGAGGACAGATTCATGTTTTTGCATTCCTTGGTTTGTGA GGTCGTTGACCACTGGTCCTCTCGAGAGAACGGAGCCCATGACCACCCCC ATCCTCACAAGTCCCCCCCACCCCCGCCCCTCCACTGGCTTCTTTTGTTT GTGCTGAAGTGGAAAAGATTGCGTGTTTGGAGATCGACCTGCCTCCGAAA ATGAAGGCGACGAAGGTGGTGTGGGGGGCGTTGAACGAGAAGCTTATCGT CTCGTACGCGGACGGAACCATCAGAACGTTCGACCCCTACGACGGGACCG AGCTCGAGTACGCACAGGTACGACTCGTTCAAGGGAGGAGTTCGGGGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11401:38..1387-

>mRNA_E-fasciculatus_F_contig11401.1136.1 ID=mRNA_E-fasciculatus_F_contig11401.1136.1|Name=mRNA_E-fasciculatus_F_contig11401.1136.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1194bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11401:38..1387- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAGACCGATCCTCCTCAAGGGGCACGAGCGTGCCATCACGTGCGTGGT
GTACAACAACGACGGGGATCTCGTTTTCACAGCGGCGAAGGACCAGATCC
CGTCCCTCTGGTACGCCAAGACCGGGGAGCGGATCGGCACCTACCAGGGC
CACCAGGGGGCGGTGTGGGACCTTTCGGTGTCATCAGAGACCGATCCTCC
TCAAGGGGCACGAGCGTGCCATCACGTGCGTGGTGTACAACAACGACGGG
GATCTCGTTTTCACAGCGGCGAAGGACCAGATCCCGTCCCTCTGGTACGC
CAAGACCGGGGAGCGGATCGGCACCTACCAGGGCCACCAGGGGGCGGTGT
GGGACCTTTCGGTGTCATGGGATTCGACACGCATGCTCTCAGCTTCGGCG
GACGCCTCGGCGCGCATGTGGGACGTGCAGACCGGCCGAGAGCTGGTGGT
GTACAACCACATGGGGCCGGTTCGATCGGTCTCCTTCGCGGAGGGGGGTC
AGCGGTTCGCGACGGTGTCGGACCCGTTCACGGACAGCCCCGGTCTCATC
TCGGTCTTCGAGGCCCCGGATGACGTGCCGACAGACCAGTGGGATTCGAC
ACGCATGCTCTCAGCTTCGGCGGACGCCTCGGCGCGCATGTGGGACGTGC
AGACCGGCCGAGAGCTGGTGGTGTACAACCACATGGGGCCGGTTCGATCG
GTCTCCTTCGCGGAGGGGGGTCAGCGGTTCGCGACGGTGTCGGACCCGTT
CACGGACAGCCCCGGTCTCATCTCGGTCTTCGAGGCCCCGGATGACGTGC
CGACAGACCAGTTGGAAAAGATTGCGTGTTTGGAGATCGACCTGCCTCCG
AAAATGAAGGCGACGAAGGTGGTGTGGGGGGCGTTGAACGAGAAGCTTAT
CGTCTCGTACGCGGACGGAACCATCAGAACGTTCGACCCCTACGACGGGA
CCGAGCTCGAGTACGCACAGGTACGACTCGTTCAAGGGAGGAGTTCGGGG
GTGTGGAAAAGATTGCGTGTTTGGAGATCGACCTGCCTCCGAAAATGAAG
GCGACGAAGGTGGTGTGGGGGGCGTTGAACGAGAAGCTTATCGTCTCGTA
CGCGGACGGAACCATCAGAACGTTCGACCCCTACGACGGGACCGAGCTCG
AGTACGCACAGGTACGACTCGTTCAAGGGAGGAGTTCGGGGGTG
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