mRNA_E-fasciculatus_F_contig1135.1084.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1135.1084.1
Unique NamemRNA_E-fasciculatus_F_contig1135.1084.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1135.1084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1135contigE-fasciculatus_F_contig1135:16547..16943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927644.2451742-CDS-E-fasciculatus_F_contig1135:16546..169361622927644.2451742-CDS-E-fasciculatus_F_contig1135:16546..16936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1135 16547..16936 +
1695995632.4898448-CDS-E-fasciculatus_F_contig1135:16546..169361695995632.4898448-CDS-E-fasciculatus_F_contig1135:16546..16936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1135 16547..16936 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927644.2558293-UTR-E-fasciculatus_F_contig1135:16936..169431622927644.2558293-UTR-E-fasciculatus_F_contig1135:16936..16943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1135 16937..16943 +
1695995632.5055206-UTR-E-fasciculatus_F_contig1135:16936..169431695995632.5055206-UTR-E-fasciculatus_F_contig1135:16936..16943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1135 16937..16943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1135.1084.1prot_E-fasciculatus_F_contig1135.1084.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1135 16547..16936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1135.1084.1

>prot_E-fasciculatus_F_contig1135.1084.1 ID=prot_E-fasciculatus_F_contig1135.1084.1|Name=mRNA_E-fasciculatus_F_contig1135.1084.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp
VENNTEVIGLSFRQDVVVSSSIASCCQQATQKHQATGAFHSRRKKKSQKN
LKTQTQKVSCCGSRATPHARRLQGTQSISIAAGGNQALIAAFYFISCSNL
PENDRFTTNQTDENTTTQQLRALRKSFLI*
back to top

mRNA from alignment at E-fasciculatus_F_contig1135:16547..16943+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1135.1084.1 ID=mRNA_E-fasciculatus_F_contig1135.1084.1|Name=mRNA_E-fasciculatus_F_contig1135.1084.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=397bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1135:16547..16943+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTAGAGAATAATACCGAGGTCATCGGCTTGTCCTTTCGACAAGACGTCGT
CGTTTCTAGCTCCATCGCTTCGTGCTGCCAACAAGCGACACAAAAACATC
AAGCGACGGGAGCGTTTCATTCTCGCCGCAAAAAGAAATCCCAGAAGAAC
CTCAAAACGCAAACACAAAAAGTCAGCTGCTGCGGCAGTCGAGCGACACC
CCATGCTCGCCGTCTTCAGGGTACCCAATCAATTTCAATTGCTGCAGGTG
GAAATCAGGCACTAATAGCGGCTTTTTATTTCATCAGCTGTTCGAATCTG
CCGGAAAACGATCGATTCACCACCAACCAAACAGACGAAAACACGACAAC
ACAACAACTCAGGGCTCTTCGAAAGAGTTTTCTCATCTGAAAATTCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1135:16547..16943+

>mRNA_E-fasciculatus_F_contig1135.1084.1 ID=mRNA_E-fasciculatus_F_contig1135.1084.1|Name=mRNA_E-fasciculatus_F_contig1135.1084.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1135:16547..16943+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTAGAGAATAATACCGAGGTCATCGGCTTGTCCTTTCGACAAGACGTCGT
CGTTTCTAGCTCCATCGCTTCGTGCTGCCAACAAGCGACACAAAAACATC
AAGCGACGGGAGCGTTTCATTCTCGCCGCAAAAAGAAATCCCAGAAGAAC
CTCAAAACGCAAACACAAAAAGTCAGCTGCTGCGGCAGTCGAGCGACACC
CCATGCTCGCCGTCTTCAGGGTACCCAATCAATTTCAATTGCTGCAGGTG
GAAATCAGGCACTAATAGCGGCTTTTTATTTCATCAGCTGTTCGAATCTG
CCGGAAAACGATCGATTCACCACCAACCAAACAGACGAAAACACGACAAC
ACAACAACTCAGGGCTCTTCGAAAGAGTTTTCTCATCTGAGTAGAGAATA
ATACCGAGGTCATCGGCTTGTCCTTTCGACAAGACGTCGTCGTTTCTAGC
TCCATCGCTTCGTGCTGCCAACAAGCGACACAAAAACATCAAGCGACGGG
AGCGTTTCATTCTCGCCGCAAAAAGAAATCCCAGAAGAACCTCAAAACGC
AAACACAAAAAGTCAGCTGCTGCGGCAGTCGAGCGACACCCCATGCTCGC
CGTCTTCAGGGTACCCAATCAATTTCAATTGCTGCAGGTGGAAATCAGGC
ACTAATAGCGGCTTTTTATTTCATCAGCTGTTCGAATCTGCCGGAAAACG
ATCGATTCACCACCAACCAAACAGACGAAAACACGACAACACAACAACTC
AGGGCTCTTCGAAAGAGTTTTCTCATCTGA
back to top