mRNA_E-fasciculatus_F_contig11335.1068.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11335.1068.1
Unique NamemRNA_E-fasciculatus_F_contig11335.1068.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11335.1068.1 vs. uniprot
Match: A0A6H5KD23_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD23_9PHAE)

HSP 1 Score: 558 bits (1438), Expect = 6.960e-191
Identity = 367/586 (62.63%), Postives = 381/586 (65.02%), Query Frame = 1 
Query:    1 KTPRDRRDFTDPARGSGPPPPE---KDRAAAPSDAGAGWHAGA---GEESPAIGTGSPGDVGAGPEDFPEAWDDGVGMYDDYGDDFGSGGVYTYSPSPPRSSAAAPAVGNGAGSSSFRSSFGGRVSSGNXXXXXXXXXXXXXXXXASPVDTSHVLDLSTSXXXXXXXXXXRFSKEALPPRSPTVASGNRRGREXXXXXXXXXXXXXXXFVDCLGVEEAGNTIPARGNGGAHDRGRSGTGPKKPPSKHGSGSGGD---------LGNSGSLAGG--------------------------------------------------AXXXXXXXXXXXXXXXXXXRYEDLVVGVAGEWRREAGG-SWKMTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEV----VVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK 1548
            KTPRDRRD  DPARG+G P      KD AA PS+ GA   A     GEESPAIGTGSPG+VGAG +DF E WDDG GMYDDYGDDFGSGGVYTYSPSP                SS RSSFG  VSSGN                +SPVDTSHVLDLS S          RFSK+ +PP+SPTVASGNR+G+                FVDCL VE A   IPA  NGGA DRG SG+GPKKPPSK+GS  G           LGNSGSLAGG                                                  +                  RY DLVVG AGEWRREAGG +WKM ASXXXXXXXXXXXXXXXX                    EAFSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEV    VVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK
Sbjct:  106 KTPRDRRDCADPARGNGLPXXXXXXKDGAAVPSETGAARRASGAVPGEESPAIGTGSPGEVGAGSDDFLEVWDDGGGMYDDYGDDFGSGGVYTYSPSPXXXXXXXXXXXXXXXXSSVRSSFGDPVSSGNSSCNARDSAGGKSAA-SSPVDTSHVLDLSASSTPPLPQTS-RFSKQVVPPKSPTVASGNRKGQASARLVVCSDDDDD--FVDCLEVEGADKAIPAGRNGGARDRGWSGSGPKKPPSKNGSFGGSXXXXXXGRFALGNSGSLAGGPAARQPSKSLGRGQYSSXXXXXXXXXXDGFSMVVSTKRRGSCAAAHTAGASAGTFAGRAAGRTGLGDGGRYGDLVVGAAGEWRREAGGEAWKMAASXXXXXXXXXXXXXXXXSHDYELPPRKKK--------EAFSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVRQEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK 679
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BLAST of mRNA_E-fasciculatus_F_contig11335.1068.1 vs. uniprot
Match: D8LM38_ECTSI (Excision repair helicase ercc-6-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM38_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 6.680e-117
Identity = 173/176 (98.30%), Postives = 175/176 (99.43%), Query Frame = 1 
Query: 1021 AFSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK 1548
            AFSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLV+AACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIER EPR+HVWDYVILDEGHKIKNASTK
Sbjct:   34 AFSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVRAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIEREEPRKHVWDYVILDEGHKIKNASTK 209
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BLAST of mRNA_E-fasciculatus_F_contig11335.1068.1 vs. uniprot
Match: A0A7S2UB82_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB82_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.950e-34
Identity = 75/176 (42.61%), Postives = 105/176 (59.66%), Query Frame = 1 
Query: 1021 AFSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK 1548
            +  VP  LY+ +Y HQ+ GV+W+ S+H   +GGILGDDMG+GKT+Q   F+ GL   +  KSALV+AP +++R WE E  R +     P+  + V++S++  + RR  + + A   S     ++ITTYG+V S+P  F P      G  E        WDYVILDEGHKIKN S K
Sbjct:   12 SICVPRPLYDSLYNHQKSGVQWMASMHNNRIGGILGDDMGMGKTYQTLTFIGGLMKAKTIKSALVVAPVTLLRTWEKEAERVIRTLCLPRVNIKVVSSDIK-EPRRSRVLVEALSCSPQSPHLVITTYGLVGSSPLSFVPD-----GCAE--------WDYVILDEGHKIKNPSAK 173
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BLAST of mRNA_E-fasciculatus_F_contig11335.1068.1 vs. uniprot
Match: A0A7S2E6H2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6H2_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.700e-33
Identity = 79/174 (45.40%), Postives = 112/174 (64.37%), Query Frame = 1 
Query: 1030 VPAELYNRMYAHQRIGVRWLWSLHQGDM-GGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK 1548
            +P++LY+R+Y HQR+GVRW+ SLH   + GGILGDDMG+GKT+Q   +L GL  ++  ++AL++ P S+MR WE E    L +   P+  + V+AS++  K RR  I + A   S     ++ITTYG+VSSNP    P        +E  + R  +WDYV+LDEGHKIKN +TK
Sbjct:  364 IPSDLYHRLYPHQRVGVRWIASLHNAPITGGILGDDMGMGKTYQTLTYLGGLMKSKTIRNALIICPVSLMRTWEREARDILERCCVPRITISVLASDVR-KPRRHDILVDALTTSYKYPQLVITTYGLVSSNPLDLIP--------VENEQER--LWDYVVLDEGHKIKNPTTK 526
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BLAST of mRNA_E-fasciculatus_F_contig11335.1068.1 vs. uniprot
Match: A0A7D9M5I8_PARCT (DNA excision repair ERCC-6-like (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5I8_PARCT)

HSP 1 Score: 129 bits (325), Expect = 6.040e-31
Identity = 66/175 (37.71%), Postives = 97/175 (55.43%), Query Frame = 1 
Query: 1024 FSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK 1548
            F +P ++Y+++Y +Q+ G+ W W L++G  GGILGDDMGLGKT QV  FLAG+FG+   K+AL++ P S++  WE E  +W  +          M   +   A+ ++           R  V +TTYG+ ++  KQF+    G              WDY+ILDEGHKIKN + K
Sbjct:   23 FKLPEKIYSKLYPYQKEGIMWFWRLYEGRKGGILGDDMGLGKTIQVISFLAGMFGSGHVKNALIIMPVSLLTNWEKEFKKWAPEIRVRNFHGSNMKQRIDNLAKVQS-----------RNGVCLTTYGLANTCHKQFSEDRYGD----------TFTWDYIILDEGHKIKNTANK 176
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BLAST of mRNA_E-fasciculatus_F_contig11335.1068.1 vs. uniprot
Match: A0A7S4JE07_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JE07_9STRA)

HSP 1 Score: 135 bits (341), Expect = 4.030e-30
Identity = 79/173 (45.66%), Postives = 107/173 (61.85%), Query Frame = 1 
Query: 1030 VPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK 1548
            VP +LY+R+Y HQ++GV+WL SLH   +GGILGDDMGLGKTFQ   FL GL  +   +SALV  P S++R WE E    L ++      + V++S++ +K +R  +  +A   S     + ITTYG+V+SNP  F           + GE  +  W+YVILDEGHKIKN STK
Sbjct:  206 VPRDLYDRLYDHQKVGVQWLASLHTDGIGGILGDDMGLGKTFQTLTFLGGLMVSGTIRSALVCCPVSLLRTWEKEARDILEESFGLDVSISVISSDV-SKKKRTQLLQSAMNCSTKYPHLAITTYGLVTSNPYDFIRT-------DQNGE--KMAWNYVILDEGHKIKNPSTK 368
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11335.1068.1 vs. uniprot
Match: A0A087TZQ3_STEMI (DNA excision repair protein ERCC-6-like protein (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087TZQ3_STEMI)

HSP 1 Score: 125 bits (315), Expect = 4.590e-30
Identity = 69/175 (39.43%), Postives = 93/175 (53.14%), Query Frame = 1 
Query: 1018 EAFSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNAS 1542
            + F +  E+Y ++Y +QR GV W+WSL +   GG+LGDDMGLGKTFQV  FL+GL      K  L++ P S++  WE E  +W     CP   V         +  R  + +      + RG VL+T+YGM+ SN        G            + VWDYVILDEGHKIKN +
Sbjct:    6 DEFHIFHEIYEKLYPYQREGVAWMWSLFKKRKGGVLGDDMGLGKTFQVIAFLSGLIDADLVKHILIIMPVSLLPNWEREFKKW-----CPGISVHCFHGSSKKERERNLLRV------QRRGQVLLTSYGMILSNIDSLTSLDG-----------EKFVWDYVILDEGHKIKNPT 158
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BLAST of mRNA_E-fasciculatus_F_contig11335.1068.1 vs. uniprot
Match: A0A8J1TMC7_OWEFU (Ofus.G042067 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TMC7_OWEFU)

HSP 1 Score: 134 bits (336), Expect = 5.340e-30
Identity = 75/177 (42.37%), Postives = 103/177 (58.19%), Query Frame = 1 
Query: 1018 EAFSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK 1548
            E F +  +LY+++Y HQ+ GV WLW L++   GGILGDDMGLGKT QV  FL+G+F   Q K+ L++ P +VM  WE E  +W        +  + + S   A  + R  +LA     + RG V +T+YGM+ ++ KQ +   G           R+ VWDYVILDEGHKIKN S K
Sbjct:   94 EGFYLYKDLYDKLYPHQKDGVLWLWKLNKKKRGGILGDDMGLGKTIQVIAFLSGMFDAEQCKTVLLVLPVAVMLNWEKEFEKW--------SPGLRLTSYHGASKKERERSLAKV---QRRGGVCMTSYGMIVTSFKQLSEKDG-----------REFVWDYVILDEGHKIKNPSNK 248
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BLAST of mRNA_E-fasciculatus_F_contig11335.1068.1 vs. uniprot
Match: UPI000C6E16C4 (DNA excision repair protein ERCC-6-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E16C4)

HSP 1 Score: 127 bits (318), Expect = 7.700e-30
Identity = 67/173 (38.73%), Postives = 99/173 (57.23%), Query Frame = 1 
Query: 1024 FSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNAS 1542
            F +  EL+N++Y++QR GV+WLW+L++   GG+LGDDMGLGKT Q+  FL+G+F   + K  L++ P S++  W+ E  +W+     P        S    K  R  I +   GG      VL+T+YG V +N +            + + E R+ VWDYVILDEGH+IKN +
Sbjct:   15 FYLHHELFNKLYSYQRDGVKWLWNLYKKKKGGVLGDDMGLGKTIQIIAFLSGMFDLEEIKHVLIIMPVSLLPNWDREFKKWV-----PGMNTSNFYSSNKRKRERNLIKVQCYGG------VLLTSYGTVITNSEI-----------LSKREGREFVWDYVILDEGHRIKNPT 165
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11335.1068.1 vs. uniprot
Match: R7VJ99_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VJ99_CAPTE)

HSP 1 Score: 132 bits (333), Expect = 1.260e-29
Identity = 77/175 (44.00%), Postives = 100/175 (57.14%), Query Frame = 1 
Query: 1024 FSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK 1548
            F +  ELY ++YAHQR GV W+W L Q   GGILGDDMGLGKT QV  FL+G+F + + KS L++ P +V+  WE+E  +W   A     E     S+   + R RA+          RG V +T+YGM+ +N  Q A   G           R+ +WDYVILDEGHKIKN S K
Sbjct:   84 FYLFQELYKQLYAHQREGVTWMWWLFQKRKGGILGDDMGLGKTIQVIAFLSGMFDSEKIKSVLIILPVAVITNWENEFQKW---APGISTEHFHSGSK---RDRDRALMKVQR-----RGGVCMTSYGMMVNNADQLAEQNG-----------REFIWDYVILDEGHKIKNPSNK 236
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11335.1068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD23_9PHAE6.960e-19162.63Helicase ATP-binding domain-containing protein n=1... [more]
D8LM38_ECTSI6.680e-11798.30Excision repair helicase ercc-6-related n=1 Tax=Ec... [more]
A0A7S2UB82_9STRA5.950e-3442.61Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2E6H2_9STRA1.700e-3345.40Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7D9M5I8_PARCT6.040e-3137.71DNA excision repair ERCC-6-like (Fragment) n=2 Tax... [more]
A0A7S4JE07_9STRA4.030e-3045.66Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A087TZQ3_STEMI4.590e-3039.43DNA excision repair protein ERCC-6-like protein (F... [more]
A0A8J1TMC7_OWEFU5.340e-3042.37Ofus.G042067 protein n=1 Tax=Owenia fusiformis Tax... [more]
UPI000C6E16C47.700e-3038.73DNA excision repair protein ERCC-6-like n=1 Tax=Ce... [more]
R7VJ99_CAPTE1.260e-2944.00Uncharacterized protein n=1 Tax=Capitella teleta T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11335contigE-fasciculatus_F_contig11335:768..4485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.8
Seed ortholog evalue7e-95
Seed eggNOG ortholog2880.D8LM38
Preferred nameERCC6L
KEGG koko:K20093
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008094,GO:0015616,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0042623,GO:0044424,GO:0044444,GO:0044464,GO:0140097
EggNOG free text desc.histone H2A-H2B dimer displacement
EggNOG OGsCOG0553@1,KOG0387@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSNF2-related helicase domain protein
Ec32 orthologEc-06_002330.1
Exons5
Model size1548
Cds size1548
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11335.1068.1prot_E-fasciculatus_F_contig11335.1068.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11335 768..4485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927641.5693364-CDS-E-fasciculatus_F_contig11335:767..10191622927641.5693364-CDS-E-fasciculatus_F_contig11335:767..1019Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11335 768..1019 -
1695995631.6457293-CDS-E-fasciculatus_F_contig11335:767..10191695995631.6457293-CDS-E-fasciculatus_F_contig11335:767..1019Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11335 768..1019 -
1622927641.5816367-CDS-E-fasciculatus_F_contig11335:2097..22351622927641.5816367-CDS-E-fasciculatus_F_contig11335:2097..2235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11335 2098..2235 -
1695995631.656001-CDS-E-fasciculatus_F_contig11335:2097..22351695995631.656001-CDS-E-fasciculatus_F_contig11335:2097..2235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11335 2098..2235 -
1622927642.8971696-CDS-E-fasciculatus_F_contig11335:2912..29661622927642.8971696-CDS-E-fasciculatus_F_contig11335:2912..2966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11335 2913..2966 -
1695995631.663873-CDS-E-fasciculatus_F_contig11335:2912..29661695995631.663873-CDS-E-fasciculatus_F_contig11335:2912..2966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11335 2913..2966 -
1622927642.913344-CDS-E-fasciculatus_F_contig11335:3222..35351622927642.913344-CDS-E-fasciculatus_F_contig11335:3222..3535Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11335 3223..3535 -
1695995631.671678-CDS-E-fasciculatus_F_contig11335:3222..35351695995631.671678-CDS-E-fasciculatus_F_contig11335:3222..3535Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11335 3223..3535 -
1622927642.9300134-CDS-E-fasciculatus_F_contig11335:3694..44851622927642.9300134-CDS-E-fasciculatus_F_contig11335:3694..4485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11335 3695..4485 -
1695995631.6806211-CDS-E-fasciculatus_F_contig11335:3694..44851695995631.6806211-CDS-E-fasciculatus_F_contig11335:3694..4485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11335 3695..4485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11335.1068.1

>prot_E-fasciculatus_F_contig11335.1068.1 ID=prot_E-fasciculatus_F_contig11335.1068.1|Name=mRNA_E-fasciculatus_F_contig11335.1068.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=516bp
KTPRDRRDFTDPARGSGPPPPEKDRAAAPSDAGAGWHAGAGEESPAIGTG
SPGDVGAGPEDFPEAWDDGVGMYDDYGDDFGSGGVYTYSPSPPRSSAAAP
AVGNGAGSSSFRSSFGGRVSSGNSSSARDSAGRNSSAAAASPVDTSHVLD
LSTSSPPPPPPQTSRFSKEALPPRSPTVASGNRRGRESEGIVVCSDDDDD
DDFVDCLGVEEAGNTIPARGNGGAHDRGRSGTGPKKPPSKHGSGSGGDLG
NSGSLAGGAAARQPASLGGGGGGGDGGRYEDLVVGVAGEWRREAGGSWKM
TASGGGGGGSGNASGGSESDDDGDESDDYELTPKKKKKKEAFSVPAELYN
RMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQA
KSALVLAPKSVMRGWEDELGRWLVKAACPKAEVVVMASEMPAKARRRAIA
LAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWD
YVILDEGHKIKNASTK
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mRNA from alignment at E-fasciculatus_F_contig11335:768..4485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11335.1068.1 ID=mRNA_E-fasciculatus_F_contig11335.1068.1|Name=mRNA_E-fasciculatus_F_contig11335.1068.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3718bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11335:768..4485- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGACGCCGCGCGATCGCCGAGATTTTACCGATCCGGCGAGAGGAAGTGG
GCCACCGCCGCCTGAAAAGGATAGGGCAGCGGCGCCGTCCGATGCCGGAG
CAGGATGGCATGCGGGTGCGGGTGAAGAATCACCGGCAATAGGAACGGGA
TCGCCGGGCGATGTAGGAGCAGGGCCGGAAGATTTCCCCGAGGCGTGGGA
TGACGGCGTGGGAATGTACGACGACTACGGTGATGACTTCGGCAGCGGCG
GCGTTTACACGTACTCGCCGTCGCCGCCTCGATCATCTGCCGCCGCTCCG
GCTGTCGGCAACGGCGCGGGGTCTTCCTCCTTCCGTTCTTCTTTTGGCGG
CCGCGTTTCGAGCGGCAACAGCAGCAGCGCTCGTGACTCGGCCGGCAGGA
ATTCATCAGCAGCGGCAGCGAGTCCCGTCGACACGAGTCATGTTTTGGAC
CTATCGACGTCGTCCCCGCCGCCGCCGCCGCCGCAAACATCCCGGTTTTC
CAAGGAGGCCTTGCCCCCGAGAAGCCCGACTGTCGCTTCCGGTAATCGCA
GAGGCCGCGAATCCGAGGGTATCGTTGTTTGTAGCGACGACGACGACGAC
GACGACTTTGTGGACTGCCTGGGGGTGGAGGAAGCGGGCAACACTATCCC
CGCCCGTGGGAACGGGGGTGCTCACGACCGGGGGCGGTCCGGCACGGGGC
CGAAGAAGCCGCCGTCGAAGCACGGCAGCGGTAGCGGCGGTGACCTCGGG
AACAGCGGCAGCCTCGCGGGAGGAGCGGCGGCACGCCAACCGTCAAACGC
TTTCGGTCGGGGGCGATACAGCAGCAGCAGCAGCGGAGGTGACGACAGCG
ATGATTTCTCGATGGTTGTTTCAACCAAACGCAGGGGTAGTGGCACTGCC
CGCACGGCGGGAGCAAGCGCGAGCACGTTCGCGGGCCCCGCGGCGGGAAG
GGCAAGCCTCGGCGGCGGTGGCGGCGGCGGCGACGGCGGGAGGTACGAAG
ACTTGGTGGTCGGTGTCGCCGGTGAGTGGCGGCGGGAAGCGGGCGGGTCC
TGGAAGATGACGGCCTCGGGCGGCGGCGGCGGCGGCAGCGGTAACGCGAG
CGGAGGCAGCGAGAGCGACGACGACGGCGACGAGAGCGACGACTACGAGC
TGACCCCAAAGAAAAAGAAAAAGAAGGAGGCGTTTTCGGTCCCGGCGGAG
CTGTACAACAGGATGTACGCCCACCAGAGGATCGGGGTGCGGTGGCTGTG
GAGTCTACACCAGGTGATATATATGTATATATATATTTTTATAGACGATG
ACTGTCGTGAGCGCTGCGGAAGCTACTCCAACGGGAACCGATTTTGGCAG
ACCTACGATCGACAAGGCTGCCGGAGCAGCGCGCTACAAGACCTTGGTTA
ATCTGTCCATCGGGCGTTTTTGGTTGAGCAAGTGTTTTTCTACCCCGCCC
CCGCGATCGAAGCGTAAGTATACAGCGCCCGCCGTCGTCTGTGTGTTTGT
CCTGCCGTCGAAACGCCAGGGGGACATGGGCGGCATCCTCGGCGACGACA
TGGGTCTGGGGAAAACCTTCCAGGTGGGCGTTTTTTTGTTTTTTTTTGTG
CCGAGTTTTCTTGGTGGGAGGGGGGCACTGGCAGACACATGAACACATTT
CAATCACCGTCTTGCCGCCCGCCTGTGGTGCCGACCTGCGGCGCGTGTAC
CGTAGGTGATATGACGTACGATAGATACCACACCCCCTGTGCTAGACCGA
TTTTAACGACGAAGAGGATGCTAAAATCAAACCATCTGTACGTTTTCGGA
AAGCTATCTCTCGATGAGACGATCGATTCCAACGTCGCCATATTTCGGCA
CCACAAATCAACATGCGGAGAAGTCGAGCCTTGAAAATCGTCCAGGGGTG
TGATATCATGTGTCACCTGCGGCATGTAGGGGGCTATCGCTGCTCGTCTT
TACGTACGGCCATTGTGTGTGTTCTCTCTTGTTCGGTGGCTCTGTGTGAA
AGTCTCGTATGGAGAAGATAGGAGAGCGGGTATGAGATGCCACTTGACAA
TAAATAGTGGCGGGCTTGCCGCTGCTGGCGTGTTGGATGGTTCGGTGTTC
CAACTTGCAGCAGCGGCCATCCCTGTTTCTTGGGCTACGTAGTCCACCTC
TCCAACGAGCAAGCCCCACCGCTGCATCGCGAATCATGCCCGGCACCCCG
TCCCTCCTCTCCTCCTCTTTTTACCTGCGTGCGACAACAACGCAACGCAG
GTGACCTGCTTCCTGGCGGGACTTTTCGGGACCAGGCAGGCCAAGAGCGC
CCTCGTGCTCGCCCCTAAGAGCGTCATGCGCGGGTGGGAAGACGAGCTAG
GGCGGTGGTTGGTCAAGGCCGCCTGCCCAAAGGCCGAGGTGAGGTACATT
GAGGTAGAGTCTACAGTCCGTAGGCTGAGGGACTCGTCAGCTTGTTGATC
AAGCGTCAGCTTGTTGGTCAAGGGCGCCTACCCAAAGCCCGGGGTGGGGC
ACATTGGGATATAGTATACAGCAGTCCGTAGGCTCGTCGGCTTGTTATCT
GTCTACGGAGTTTACTCAGTTTTGGTTTGTGCTTTTTCCAATGCCAACGT
GCTGGTCTTCTTGCTTTGTGGTCGTGCATAGGTTGGGTTCACGGCCTGCA
TACACCTATTTAGGGTGTGTGTTGCTGTGTGGTGGTGCGGGCTATGGTTG
GCCGAGCTTCCTGCACACGGGCTGCGGAAACAACGCTTCACGCGTGTCCG
TGCTTATATATGCACCTAAAGGCCTTGACCACCACATTTTTTTACCGTGC
TTTGTGCGGATCGTGTGCCGGATGCTCGAAATTGCTTACATTTGACTTGA
CTTCGTATGAACTATTTACAATTTGGCTCCAAGTTCCCTTGCGTGCAGGC
AGATAGACGGAAAAACACCCTAAACAACGAACGAGACGTGTGTGCCATAG
ACCGCTCCCCGTGGAATTCCATTAGAAATATTCCGTATCTGGCATGGGCG
ATATGGGTATACATGCGGTATGATGCGCCGCTTGCACACCTGCTGTTGTC
AATTCTGGTTGGGGATGCTCTGTAATTAGTCTGAAGTGGGAAGGCACACA
CAAAAAGGTTTGCGTAAGTCTGCACTCTTTGCTGTTGGACGACCGACGCT
ACGGCAGTAGGCGTCCGCTAGATATTGTACCGTGTGGGTGCGGTTTTTCC
ATGATCGCACCGTGTGTATGTGTGTATAATAGTACCAACGTGGGCCGCCG
GCCTTCCGGTCCCCGTCACGCTCCTCGACACACTAGAATCCATTGGATGT
ACACTGCGTTCGTTGGATCTATGTACTACACACCCGCAGAGTCGAGGACA
TGAACGTTTGCAAGACGGTTCCATCTCACTCGTCAGCCCCCCCAAACCCC
CCCCGCGCGCTACGGCCTCCGTACCCTGTCGACTCCCTCCCTGCGAAATA
AAAACGTTCACGACAGGTGGTTGTGATGGCAAGCGAGATGCCAGCCAAGG
CAAGAAGGCGAGCCATCGCCCTCGCGGCAGAGGGAGGGAGCCGTGGACGG
GGAGCGGTGCTCATCACGACCTACGGCATGGTCTCCTCGAACCCTAAGCA
GTTCGCTCCCGCCGTGGGGGGCTCCGGGGGGTGGATAGAGAGGGGGGAAC
CCCGGCAGCATGTGTGGGACTACGTCATCCTGGACGAGGGCCACAAGATC
AAAAACGCCTCCACAAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11335:768..4485-

>mRNA_E-fasciculatus_F_contig11335.1068.1 ID=mRNA_E-fasciculatus_F_contig11335.1068.1|Name=mRNA_E-fasciculatus_F_contig11335.1068.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3096bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11335:768..4485- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGACGCCGCGCGATCGCCGAGATTTTACCGATCCGGCGAGAGGAAGTGG
GCCACCGCCGCCTGAAAAGGATAGGGCAGCGGCGCCGTCCGATGCCGGAG
CAGGATGGCATGCGGGTGCGGGTGAAGAATCACCGGCAATAGGAACGGGA
TCGCCGGGCGATGTAGGAGCAGGGCCGGAAGATTTCCCCGAGGCGTGGGA
TGACGGCGTGGGAATGTACGACGACTACGGTGATGACTTCGGCAGCGGCG
GCGTTTACACGTACTCGCCGTCGCCGCCTCGATCATCTGCCGCCGCTCCG
GCTGTCGGCAACGGCGCGGGGTCTTCCTCCTTCCGTTCTTCTTTTGGCGG
CCGCGTTTCGAGCGGCAACAGCAGCAGCGCTCGTGACTCGGCCGGCAGGA
ATTCATCAGCAGCGGCAGCGAGTCCCGTCGACACGAGTCATGTTTTGGAC
CTATCGACGTCGTCCCCGCCGCCGCCGCCGCCGCAAACATCCCGGTTTTC
CAAGGAGGCCTTGCCCCCGAGAAGCCCGACTGTCGCTTCCGGTAATCGCA
GAGGCCGCGAATCCGAGGGTATCGTTGTTTGTAGCGACGACGACGACGAC
GACGACTTTGTGGACTGCCTGGGGGTGGAGGAAGCGGGCAACACTATCCC
CGCCCGTGGGAACGGGGGTGCTCACGACCGGGGGCGGTCCGGCACGGGGC
CGAAGAAGCCGCCGTCGAAGCACGGCAGCGGTAGCGGCGGTGACCTCGGG
AACAGCGGCAGCCTCGCGGGAGGAGCGGCGGCACGCCAACCAAGACGCCG
CGCGATCGCCGAGATTTTACCGATCCGGCGAGAGGAAGTGGGCCACCGCC
GCCTGAAAAGGATAGGGCAGCGGCGCCGTCCGATGCCGGAGCAGGATGGC
ATGCGGGTGCGGGTGAAGAATCACCGGCAATAGGAACGGGATCGCCGGGC
GATGTAGGAGCAGGGCCGGAAGATTTCCCCGAGGCGTGGGATGACGGCGT
GGGAATGTACGACGACTACGGTGATGACTTCGGCAGCGGCGGCGTTTACA
CGTACTCGCCGTCGCCGCCTCGATCATCTGCCGCCGCTCCGGCTGTCGGC
AACGGCGCGGGGTCTTCCTCCTTCCGTTCTTCTTTTGGCGGCCGCGTTTC
GAGCGGCAACAGCAGCAGCGCTCGTGACTCGGCCGGCAGGAATTCATCAG
CAGCGGCAGCGAGTCCCGTCGACACGAGTCATGTTTTGGACCTATCGACG
TCGTCCCCGCCGCCGCCGCCGCCGCAAACATCCCGGTTTTCCAAGGAGGC
CTTGCCCCCGAGAAGCCCGACTGTCGCTTCCGGTAATCGCAGAGGCCGCG
AATCCGAGGGTATCGTTGTTTGTAGCGACGACGACGACGACGACGACTTT
GTGGACTGCCTGGGGGTGGAGGAAGCGGGCAACACTATCCCCGCCCGTGG
GAACGGGGGTGCTCACGACCGGGGGCGGTCCGGCACGGGGCCGAAGAAGC
CGCCGTCGAAGCACGGCAGCGGTAGCGGCGGTGACCTCGGGAACAGCGGC
AGCCTCGCGGGAGGAGCGGCGGCACGCCAACCGGCAAGCCTCGGCGGCGG
TGGCGGCGGCGGCGACGGCGGGAGGTACGAAGACTTGGTGGTCGGTGTCG
CCGGTGAGTGGCGGCGGGAAGCGGGCGGGTCCTGGAAGATGACGGCCTCG
GGCGGCGGCGGCGGCGGCAGCGGTAACGCGAGCGGAGGCAGCGAGAGCGA
CGACGACGGCGACGAGAGCGACGACTACGAGCTGACCCCAAAGAAAAAGA
AAAAGAAGGAGGCGTTTTCGGTCCCGGCGGAGCTGTACAACAGGATGTAC
GCCCACCAGAGGATCGGGGTGCGGTGGCTGTGGAGTCTACACCAGGGCAA
GCCTCGGCGGCGGTGGCGGCGGCGGCGACGGCGGGAGGTACGAAGACTTG
GTGGTCGGTGTCGCCGGTGAGTGGCGGCGGGAAGCGGGCGGGTCCTGGAA
GATGACGGCCTCGGGCGGCGGCGGCGGCGGCAGCGGTAACGCGAGCGGAG
GCAGCGAGAGCGACGACGACGGCGACGAGAGCGACGACTACGAGCTGACC
CCAAAGAAAAAGAAAAAGAAGGAGGCGTTTTCGGTCCCGGCGGAGCTGTA
CAACAGGATGTACGCCCACCAGAGGATCGGGGTGCGGTGGCTGTGGAGTC
TACACCAGGGGGACATGGGCGGCATCCTCGGCGACGACATGGGTCTGGGG
AAAACCTTCCAGGGGGACATGGGCGGCATCCTCGGCGACGACATGGGTCT
GGGGAAAACCTTCCAGGTGACCTGCTTCCTGGCGGGACTTTTCGGGACCA
GGCAGGCCAAGAGCGCCCTCGTGCTCGCCCCTAAGAGCGTCATGCGCGGG
TGGGAAGACGAGCTAGGGCGGTGGTTGGTCAAGGCCGCCTGCCCAAAGGC
CGAGGTGACCTGCTTCCTGGCGGGACTTTTCGGGACCAGGCAGGCCAAGA
GCGCCCTCGTGCTCGCCCCTAAGAGCGTCATGCGCGGGTGGGAAGACGAG
CTAGGGCGGTGGTTGGTCAAGGCCGCCTGCCCAAAGGCCGAGGTGGTTGT
GATGGCAAGCGAGATGCCAGCCAAGGCAAGAAGGCGAGCCATCGCCCTCG
CGGCAGAGGGAGGGAGCCGTGGACGGGGAGCGGTGCTCATCACGACCTAC
GGCATGGTCTCCTCGAACCCTAAGCAGTTCGCTCCCGCCGTGGGGGGCTC
CGGGGGGTGGATAGAGAGGGGGGAACCCCGGCAGCATGTGTGGGACTACG
TCATCCTGGACGAGGGCCACAAGATCAAAAACGCCTCCACAAAGGTGGTT
GTGATGGCAAGCGAGATGCCAGCCAAGGCAAGAAGGCGAGCCATCGCCCT
CGCGGCAGAGGGAGGGAGCCGTGGACGGGGAGCGGTGCTCATCACGACCT
ACGGCATGGTCTCCTCGAACCCTAAGCAGTTCGCTCCCGCCGTGGGGGGC
TCCGGGGGGTGGATAGAGAGGGGGGAACCCCGGCAGCATGTGTGGGACTA
CGTCATCCTGGACGAGGGCCACAAGATCAAAAACGCCTCCACAAAG
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