mRNA_E-fasciculatus_F_contig11330.1065.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11330.1065.1
Unique NamemRNA_E-fasciculatus_F_contig11330.1065.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: A0A7S3UV91_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV91_HETAK)

HSP 1 Score: 152 bits (383), Expect = 8.580e-41
Identity = 74/89 (83.15%), Postives = 82/89 (92.13%), Query Frame = 1
Query:    1 QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPS-AMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
            +DDL+VSASLDQTVRVWD +GLRKKTVRGAP  A    +MV++MN+DLFGGTDAVVKYVLEGHDRGVNWA+FHPTLPLVISGADDRQVK
Sbjct:   28 KDDLIVSASLDQTVRVWDISGLRKKTVRGAPQRAEDATNMVARMNADLFGGTDAVVKYVLEGHDRGVNWAAFHPTLPLVISGADDRQVK 116          
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: A0A5D6XT94_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XT94_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.580e-40
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    1 QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQ 258
            +DDL+VSAS+D+TVRVWDTTGLRKKTVRGAPSAM         N D+FG +DAVVKYVLEGHDR VNWA+FHPTLPL++SGADDRQ
Sbjct:   73 KDDLIVSASVDRTVRVWDTTGLRKKTVRGAPSAMDDVAPARAANHDIFGASDAVVKYVLEGHDRSVNWAAFHPTLPLIVSGADDRQ 158          
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: D8LL95_ECTSI (Coatomer subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL95_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.830e-39
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
Query:   52 DTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
            DTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK
Sbjct:  163 DTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 233          
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: UPI000C1D7241 (coatomer subunit alpha-1-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D7241)

HSP 1 Score: 134 bits (336), Expect = 7.220e-39
Identity = 65/88 (73.86%), Postives = 74/88 (84.09%), Query Frame = 1
Query:    1 QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
            ++DLVVSASLDQT+RVWD   LRKKTV  A   ++    +S+MNSD FGG DAVVKYVLEGHDRGVNWASFHPTLPL++SGADDRQVK
Sbjct:    8 KEDLVVSASLDQTIRVWDIGALRKKTVSPADDILR----LSQMNSDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVK 91          
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: A0A392PEY4_9FABA (Coatomer subunit alpha-1-like n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PEY4_9FABA)

HSP 1 Score: 128 bits (321), Expect = 1.620e-36
Identity = 62/88 (70.45%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
            +DDLVVSASLDQTVRVWD   L++K    A   ++    +S+MN+DLFGG DAVVKYVLEGHDRGVNWASFHPTLPL++S ADDRQVK
Sbjct:    8 KDDLVVSASLDQTVRVWDIGSLKRKNASPADDILR----LSQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSAADDRQVK 91          
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: UPI0010AB01D5 (coatomer subunit alpha-1-like n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010AB01D5)

HSP 1 Score: 130 bits (327), Expect = 1.650e-35
Identity = 64/88 (72.73%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    1 QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
            ++DLV SASLDQTVRVWD   LRKKTV  A   ++    +S+MN+D FGG DAVVKYVLEGHDRGVNWASFHPTLPL++SGADDRQVK
Sbjct:    8 KEDLVDSASLDQTVRVWDIGALRKKTVAPADDILR----LSQMNADFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVK 91          
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: A0A835LJ83_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LJ83_9MAGN)

HSP 1 Score: 127 bits (318), Expect = 4.080e-35
Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    7 DLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
            DLVVSASLDQT+RVWD   LRKKTV  A  +++    +S+M+ D+FGG DA+V YVLEGHDRGVNWASFHPTLPL++SGADDRQ+K
Sbjct:   10 DLVVSASLDQTIRVWDIGALRKKTVSSADDSLR----LSEMSLDMFGGVDAMVMYVLEGHDRGVNWASFHPTLPLIVSGADDRQIK 91          
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: A0A3B3IU78_HUMAN (Coatomer subunit alpha (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=A0A3B3IU78_HUMAN)

HSP 1 Score: 123 bits (308), Expect = 2.560e-34
Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 1
Query:    4 DDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
            +DLVVSASLDQTVRVWD +GLRKK +  +P A++  D+      DLFG TDAVVK+VLEGHDRGVNWA+FHPT+PL++SGADDRQVK
Sbjct:   17 EDLVVSASLDQTVRVWDISGLRKKNL--SPGAVE-SDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVK 100          
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: B8AQC7_ORYSI (Uncharacterized protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8AQC7_ORYSI)

HSP 1 Score: 133 bits (335), Expect = 3.280e-34
Identity = 65/88 (73.86%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
            ++DLVVSASLDQTVRVWD   LRKKTV  A   ++    +++MN+DLFGG DAVVKYVLEGHDRGVNWASFHPTLPL++SGADDRQVK
Sbjct:    8 KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR----LTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVK 91          
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: A0A835LZW1_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LZW1_9MAGN)

HSP 1 Score: 122 bits (305), Expect = 1.110e-33
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    7 DLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
            DLVVSASLDQT+RVWD   LRKKTV  A  +++    +S+M+ D+FGG DA+V YVLEG DRGVNWASFHPTLPL++SGADD Q+K
Sbjct:   10 DLVVSASLDQTIRVWDIGALRKKTVSSADDSLR----LSEMSLDMFGGVDAMVMYVLEGRDRGVNWASFHPTLPLIVSGADDHQIK 91          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UV91_HETAK8.580e-4183.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6XT94_9STRA1.580e-4075.58Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
D8LL95_ECTSI1.830e-39100.00Coatomer subunit alpha n=1 Tax=Ectocarpus siliculo... [more]
UPI000C1D72417.220e-3973.86coatomer subunit alpha-1-like n=1 Tax=Olea europae... [more]
A0A392PEY4_9FABA1.620e-3670.45Coatomer subunit alpha-1-like n=1 Tax=Trifolium me... [more]
UPI0010AB01D51.650e-3572.73coatomer subunit alpha-1-like n=1 Tax=Malus domest... [more]
A0A835LJ83_9MAGN4.080e-3569.77Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
A0A3B3IU78_HUMAN2.560e-3470.11Coatomer subunit alpha (Fragment) n=1 Tax=Homo sap... [more]
B8AQC7_ORYSI3.280e-3473.86Uncharacterized protein n=1 Tax=Oryza sativa subsp... [more]
A0A835LZW1_9MAGN1.110e-3367.44Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11330contigE-fasciculatus_F_contig11330:1583..2599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.1e-33
Seed eggNOG ortholog2880.D8LL95
KEGG koko:K05236
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG0292@1,KOG0292@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVesicle coat complex COPI, alpha subunit
Ec32 orthologEc-27_001800.1
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927641.36622-CDS-E-fasciculatus_F_contig11330:1582..16841622927641.36622-CDS-E-fasciculatus_F_contig11330:1582..1684Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11330 1583..1684 +
1695995631.5548372-CDS-E-fasciculatus_F_contig11330:1582..16841695995631.5548372-CDS-E-fasciculatus_F_contig11330:1582..1684Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11330 1583..1684 +
1622927641.3796287-CDS-E-fasciculatus_F_contig11330:2407..25991622927641.3796287-CDS-E-fasciculatus_F_contig11330:2407..2599Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11330 2408..2599 +
1695995631.5668502-CDS-E-fasciculatus_F_contig11330:2407..25991695995631.5668502-CDS-E-fasciculatus_F_contig11330:2407..2599Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11330 2408..2599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11330.1065.1prot_E-fasciculatus_F_contig11330.1065.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11330 1583..2599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11330.1065.1

>prot_E-fasciculatus_F_contig11330.1065.1 ID=prot_E-fasciculatus_F_contig11330.1065.1|Name=mRNA_E-fasciculatus_F_contig11330.1065.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=98bp
QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGG
TDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKKKNFRLLCYI
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mRNA from alignment at E-fasciculatus_F_contig11330:1583..2599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11330.1065.1 ID=mRNA_E-fasciculatus_F_contig11330.1065.1|Name=mRNA_E-fasciculatus_F_contig11330.1065.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1017bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11330:1583..2599+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGACGACTTGGTGGTGTCGGCATCGCTGGACCAAACCGTGAGAGTGTG GGATACCACGGGGCTTAGAAAGAAGACTGTTCGCGGGGCCCCGTCTGCGA TGGTAAGTGCCCTGGGGGGGGGGGAGGGGGGTGCCTAATGGAACACACGT CGTGCTTTTGTTTTTCGCCCTGATCGAATACCACCAAGTCAAGGGTTTCC CTTGGTACTGCTGTTGTTGAACGAGGAATCGCCCTTGCTGTCTGTTGTGG TTGTTGGTAATGTCGCTACAGCCATAATCATATATCAGCGCTGTTGTTGA GTTAGTTTTTAACAGGCTGTGTTCCTGTCGCGACGCAAAGTGCGGTTTGC TACGCGGGGGCTGATGTTTTTGCCTCTTTTTTGTGTCAACCAAACCCGTA GACGTGATCCATGGCACTCAGGTCTCCTCGAGTTTATGTATTTATGCAGC ACCTATTATACAACAATAGCCACACCCTCCCTCCGTCCCGGCTTTGTAGG GATGCGGCATGCACGACCACGAGTACACACCCCCCTCGGAGGCATCCAGA ACAACAATGCGCGTACCCCCCTCCCCGCCATGTTGTGCTTTTACACCTCT GTGTTTCAGCTCTTTTTTTTCTTTTTTTCGTCATCGCCATACTACAACTT GTAGCAGAAATGCACAGCAACTAGCTGGTGTCGTACCCCTCTTTGTGTGT CTCTTGTTCGTGTCTCTTGCCTTTTTGCCCGCCCGTCTTTCGCGCGATAA CTGCTGTGCATCGCTCCGGTCGCCTGGTAACAACAACACACCTGCTGGTG CTCTCGCTTTTGTCTTTTCTTGCAGCAACACGACGACATGGTGTCGAAGA TGAACTCGGACCTGTTTGGGGGAACCGATGCCGTTGTGAAGTACGTGTTG GAGGGCCACGACAGGGGTGTGAACTGGGCCAGCTTCCACCCGACCCTTCC CCTGGTCATTTCGGGGGCGGATGACCGTCAGGTGAAAAAAAAAAACTTTC GTTTGTTGTGTTATATT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11330:1583..2599+

>mRNA_E-fasciculatus_F_contig11330.1065.1 ID=mRNA_E-fasciculatus_F_contig11330.1065.1|Name=mRNA_E-fasciculatus_F_contig11330.1065.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=588bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11330:1583..2599+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGACGACTTGGTGGTGTCGGCATCGCTGGACCAAACCGTGAGAGTGTG
GGATACCACGGGGCTTAGAAAGAAGACTGTTCGCGGGGCCCCGTCTGCGA
TGCAGGACGACTTGGTGGTGTCGGCATCGCTGGACCAAACCGTGAGAGTG
TGGGATACCACGGGGCTTAGAAAGAAGACTGTTCGCGGGGCCCCGTCTGC
GATGCAACACGACGACATGGTGTCGAAGATGAACTCGGACCTGTTTGGGG
GAACCGATGCCGTTGTGAAGTACGTGTTGGAGGGCCACGACAGGGGTGTG
AACTGGGCCAGCTTCCACCCGACCCTTCCCCTGGTCATTTCGGGGGCGGA
TGACCGTCAGGTGAAAAAAAAAAACTTTCGTTTGTTGTGTTATATTCAAC
ACGACGACATGGTGTCGAAGATGAACTCGGACCTGTTTGGGGGAACCGAT
GCCGTTGTGAAGTACGTGTTGGAGGGCCACGACAGGGGTGTGAACTGGGC
CAGCTTCCACCCGACCCTTCCCCTGGTCATTTCGGGGGCGGATGACCGTC
AGGTGAAAAAAAAAAACTTTCGTTTGTTGTGTTATATT
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