mRNA_E-fasciculatus_F_contig11330.1065.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: A0A7S3UV91_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV91_HETAK) HSP 1 Score: 152 bits (383), Expect = 8.580e-41 Identity = 74/89 (83.15%), Postives = 82/89 (92.13%), Query Frame = 1
Query: 1 QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPS-AMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
+DDL+VSASLDQTVRVWD +GLRKKTVRGAP A +MV++MN+DLFGGTDAVVKYVLEGHDRGVNWA+FHPTLPLVISGADDRQVK
Sbjct: 28 KDDLIVSASLDQTVRVWDISGLRKKTVRGAPQRAEDATNMVARMNADLFGGTDAVVKYVLEGHDRGVNWAAFHPTLPLVISGADDRQVK 116
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: A0A5D6XT94_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XT94_9STRA) HSP 1 Score: 140 bits (352), Expect = 1.580e-40 Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 1
Query: 1 QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQ 258
+DDL+VSAS+D+TVRVWDTTGLRKKTVRGAPSAM N D+FG +DAVVKYVLEGHDR VNWA+FHPTLPL++SGADDRQ
Sbjct: 73 KDDLIVSASVDRTVRVWDTTGLRKKTVRGAPSAMDDVAPARAANHDIFGASDAVVKYVLEGHDRSVNWAAFHPTLPLIVSGADDRQ 158
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: D8LL95_ECTSI (Coatomer subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL95_ECTSI) HSP 1 Score: 148 bits (374), Expect = 1.830e-39 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
Query: 52 DTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
DTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK
Sbjct: 163 DTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 233
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: UPI000C1D7241 (coatomer subunit alpha-1-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D7241) HSP 1 Score: 134 bits (336), Expect = 7.220e-39 Identity = 65/88 (73.86%), Postives = 74/88 (84.09%), Query Frame = 1
Query: 1 QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
++DLVVSASLDQT+RVWD LRKKTV A ++ +S+MNSD FGG DAVVKYVLEGHDRGVNWASFHPTLPL++SGADDRQVK
Sbjct: 8 KEDLVVSASLDQTIRVWDIGALRKKTVSPADDILR----LSQMNSDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVK 91
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: A0A392PEY4_9FABA (Coatomer subunit alpha-1-like n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PEY4_9FABA) HSP 1 Score: 128 bits (321), Expect = 1.620e-36 Identity = 62/88 (70.45%), Postives = 72/88 (81.82%), Query Frame = 1
Query: 1 QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
+DDLVVSASLDQTVRVWD L++K A ++ +S+MN+DLFGG DAVVKYVLEGHDRGVNWASFHPTLPL++S ADDRQVK
Sbjct: 8 KDDLVVSASLDQTVRVWDIGSLKRKNASPADDILR----LSQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSAADDRQVK 91
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: UPI0010AB01D5 (coatomer subunit alpha-1-like n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010AB01D5) HSP 1 Score: 130 bits (327), Expect = 1.650e-35 Identity = 64/88 (72.73%), Postives = 73/88 (82.95%), Query Frame = 1
Query: 1 QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
++DLV SASLDQTVRVWD LRKKTV A ++ +S+MN+D FGG DAVVKYVLEGHDRGVNWASFHPTLPL++SGADDRQVK
Sbjct: 8 KEDLVDSASLDQTVRVWDIGALRKKTVAPADDILR----LSQMNADFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVK 91
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: A0A835LJ83_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LJ83_9MAGN) HSP 1 Score: 127 bits (318), Expect = 4.080e-35 Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 1
Query: 7 DLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
DLVVSASLDQT+RVWD LRKKTV A +++ +S+M+ D+FGG DA+V YVLEGHDRGVNWASFHPTLPL++SGADDRQ+K
Sbjct: 10 DLVVSASLDQTIRVWDIGALRKKTVSSADDSLR----LSEMSLDMFGGVDAMVMYVLEGHDRGVNWASFHPTLPLIVSGADDRQIK 91
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: A0A3B3IU78_HUMAN (Coatomer subunit alpha (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=A0A3B3IU78_HUMAN) HSP 1 Score: 123 bits (308), Expect = 2.560e-34 Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 1
Query: 4 DDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
+DLVVSASLDQTVRVWD +GLRKK + +P A++ D+ DLFG TDAVVK+VLEGHDRGVNWA+FHPT+PL++SGADDRQVK
Sbjct: 17 EDLVVSASLDQTVRVWDISGLRKKNL--SPGAVE-SDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVK 100
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: B8AQC7_ORYSI (Uncharacterized protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8AQC7_ORYSI) HSP 1 Score: 133 bits (335), Expect = 3.280e-34 Identity = 65/88 (73.86%), Postives = 75/88 (85.23%), Query Frame = 1
Query: 1 QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
++DLVVSASLDQTVRVWD LRKKTV A ++ +++MN+DLFGG DAVVKYVLEGHDRGVNWASFHPTLPL++SGADDRQVK
Sbjct: 8 KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR----LTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVK 91
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Match: A0A835LZW1_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LZW1_9MAGN) HSP 1 Score: 122 bits (305), Expect = 1.110e-33 Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 1
Query: 7 DLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVK 264
DLVVSASLDQT+RVWD LRKKTV A +++ +S+M+ D+FGG DA+V YVLEG DRGVNWASFHPTLPL++SGADD Q+K
Sbjct: 10 DLVVSASLDQTIRVWDIGALRKKTVSSADDSLR----LSEMSLDMFGGVDAMVMYVLEGRDRGVNWASFHPTLPLIVSGADDHQIK 91 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11330.1065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11330.1065.1 >prot_E-fasciculatus_F_contig11330.1065.1 ID=prot_E-fasciculatus_F_contig11330.1065.1|Name=mRNA_E-fasciculatus_F_contig11330.1065.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=98bp QDDLVVSASLDQTVRVWDTTGLRKKTVRGAPSAMQHDDMVSKMNSDLFGGback to top mRNA from alignment at E-fasciculatus_F_contig11330:1583..2599+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11330.1065.1 ID=mRNA_E-fasciculatus_F_contig11330.1065.1|Name=mRNA_E-fasciculatus_F_contig11330.1065.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1017bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11330:1583..2599+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11330:1583..2599+ >mRNA_E-fasciculatus_F_contig11330.1065.1 ID=mRNA_E-fasciculatus_F_contig11330.1065.1|Name=mRNA_E-fasciculatus_F_contig11330.1065.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=588bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11330:1583..2599+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |