mRNA_E-fasciculatus_F_contig11321.1056.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11321.1056.1
Unique NamemRNA_E-fasciculatus_F_contig11321.1056.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11321.1056.1 vs. uniprot
Match: D7FIJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 6.420e-25
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:  364 DSGSAAEPMDQD-QQDQFPPVAGSRSPPVSPIGSLGGSLDGILDDLENLDDDGIALEIDENGNVVLNPTEW 573
            DSGSAA+PMDQD QQD F PVAGS+SP VSPIGSLGGSLDG+LD LENLD DGI+L++DENGNVVLNPT+W
Sbjct:    5 DSGSAADPMDQDHQQDHFAPVAGSQSP-VSPIGSLGGSLDGMLDILENLDGDGISLDVDENGNVVLNPTDW 74
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11321.1056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIJ8_ECTSI6.420e-2581.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11321contigE-fasciculatus_F_contig11321:136..832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue8.1e-22
Seed eggNOG ortholog2880.D7FIJ8
Preferred nameTDBP1
KEGG koko:K10862
EggNOG free text desc.3'-tyrosyl-DNA phosphodiesterase activity
EggNOG OGsKOG2031@1,KOG2031@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size575
Cds size543
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11321.1056.1prot_E-fasciculatus_F_contig11321.1056.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11321 136..802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927639.592317-CDS-E-fasciculatus_F_contig11321:135..3811622927639.592317-CDS-E-fasciculatus_F_contig11321:135..381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11321 136..381 -
1695995631.2045727-CDS-E-fasciculatus_F_contig11321:135..3811695995631.2045727-CDS-E-fasciculatus_F_contig11321:135..381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11321 136..381 -
1622927639.6036549-CDS-E-fasciculatus_F_contig11321:505..8021622927639.6036549-CDS-E-fasciculatus_F_contig11321:505..802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11321 506..802 -
1695995631.2213166-CDS-E-fasciculatus_F_contig11321:505..8021695995631.2213166-CDS-E-fasciculatus_F_contig11321:505..802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11321 506..802 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927639.6174781-UTR-E-fasciculatus_F_contig11321:802..8321622927639.6174781-UTR-E-fasciculatus_F_contig11321:802..832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11321 803..832 -
1695995631.2296376-UTR-E-fasciculatus_F_contig11321:802..8321695995631.2296376-UTR-E-fasciculatus_F_contig11321:802..832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11321 803..832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11321.1056.1

>prot_E-fasciculatus_F_contig11321.1056.1 ID=prot_E-fasciculatus_F_contig11321.1056.1|Name=mRNA_E-fasciculatus_F_contig11321.1056.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=181bp
MCAYQHLTAHPPQNRRSYVRSTKPLSHKQIGFALVWATHDREIESCAAVP
FSCSQERLCAATPKKGVDPGSLLILPLPPKAQKAPPHGGPAESLQAIQQA
PVWVSCSISMDDSGSAAEPMDQDQQDQFPPVAGSRSPPVSPIGSLGGSLD
GILDDLENLDDDGIALEIDENGNVVLNPTEW
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mRNA from alignment at E-fasciculatus_F_contig11321:136..832-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11321.1056.1 ID=mRNA_E-fasciculatus_F_contig11321.1056.1|Name=mRNA_E-fasciculatus_F_contig11321.1056.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=697bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11321:136..832- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCTATCTCTCTCCGCTGATCGGTGGACCTATGTGTGCATACCAGCATCT
TACAGCACACCCTCCTCAAAACCGGAGATCGTACGTACGATCTACGAAAC
CGCTCTCACACAAGCAAATAGGCTTTGCCCTTGTGTGGGCGACACATGAT
CGAGAGATAGAAAGCTGCGCAGCTGTCCCGTTCTCTTGCAGCCAGGAGCG
GCTGTGCGCAGCAACGCCGAAGAAAGGTGTCGATCCGGGCTCTCTGTTGA
TTTTACCACTCCCCCCAAAGGCACAGAAGGCTCCCCCCCACGGCGGACCC
GCGGAGAGTCTGCAGGCGATACAGCAGGTACATACATCTACAGCTCTCCT
CCCGAAACCGTGTGTCGCTCACTGGAAGAGAAACAAGACACAAGCCGGCA
AAACCAGCCTCACACTTGAACCGGACAACTCTCGCCGTCGCATCCGCGCA
GGCTCCAGTTTGGGTATCTTGCAGCATCAGCATGGACGATTCTGGTTCCG
CAGCCGAACCCATGGACCAAGACCAACAGGACCAGTTCCCCCCCGTCGCG
GGCTCCCGGTCCCCCCCCGTGTCCCCGATCGGATCGCTGGGAGGATCCCT
GGATGGCATACTGGACGACCTCGAGAACCTCGACGATGACGGCATCGCCC
TGGAGATCGACGAGAATGGCAACGTCGTCTTGAACCCCACCGAGTGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11321:136..832-

>mRNA_E-fasciculatus_F_contig11321.1056.1 ID=mRNA_E-fasciculatus_F_contig11321.1056.1|Name=mRNA_E-fasciculatus_F_contig11321.1056.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1086bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11321:136..832- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGTGCATACCAGCATCTTACAGCACACCCTCCTCAAAACCGGAGATC
GTACGTACGATCTACGAAACCGCTCTCACACAAGCAAATAGGCTTTGCCC
TTGTGTGGGCGACACATGATCGAGAGATAGAAAGCTGCGCAGCTGTCCCG
TTCTCTTGCAGCCAGGAGCGGCTGTGCGCAGCAACGCCGAAGAAAGGTGT
CGATCCGGGCTCTCTGTTGATTTTACCACTCCCCCCAAAGGCACAGAAGG
CTCCCCCCCACGGCGGACCCGCGGAGAGTCTGCAGGCGATACAGCAGATG
TGTGCATACCAGCATCTTACAGCACACCCTCCTCAAAACCGGAGATCGTA
CGTACGATCTACGAAACCGCTCTCACACAAGCAAATAGGCTTTGCCCTTG
TGTGGGCGACACATGATCGAGAGATAGAAAGCTGCGCAGCTGTCCCGTTC
TCTTGCAGCCAGGAGCGGCTGTGCGCAGCAACGCCGAAGAAAGGTGTCGA
TCCGGGCTCTCTGTTGATTTTACCACTCCCCCCAAAGGCACAGAAGGCTC
CCCCCCACGGCGGACCCGCGGAGAGTCTGCAGGCGATACAGCAGGCTCCA
GTTTGGGTATCTTGCAGCATCAGCATGGACGATTCTGGTTCCGCAGCCGA
ACCCATGGACCAAGACCAACAGGACCAGTTCCCCCCCGTCGCGGGCTCCC
GGTCCCCCCCCGTGTCCCCGATCGGATCGCTGGGAGGATCCCTGGATGGC
ATACTGGACGACCTCGAGAACCTCGACGATGACGGCATCGCCCTGGAGAT
CGACGAGAATGGCAACGTCGTCTTGAACCCCACCGAGTGGGCTCCAGTTT
GGGTATCTTGCAGCATCAGCATGGACGATTCTGGTTCCGCAGCCGAACCC
ATGGACCAAGACCAACAGGACCAGTTCCCCCCCGTCGCGGGCTCCCGGTC
CCCCCCCGTGTCCCCGATCGGATCGCTGGGAGGATCCCTGGATGGCATAC
TGGACGACCTCGAGAACCTCGACGATGACGGCATCGCCCTGGAGATCGAC
GAGAATGGCAACGTCGTCTTGAACCCCACCGAGTGG
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