mRNA_E-fasciculatus_F_contig11298.1035.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11298.1035.1
Unique NamemRNA_E-fasciculatus_F_contig11298.1035.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11298.1035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11298contigE-fasciculatus_F_contig11298:2721..4502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size592
Cds size312
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11298.1035.1prot_E-fasciculatus_F_contig11298.1035.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11298 2721..4223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927637.271542-CDS-E-fasciculatus_F_contig11298:2720..27591622927637.271542-CDS-E-fasciculatus_F_contig11298:2720..2759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11298 2721..2759 +
1695995629.978683-CDS-E-fasciculatus_F_contig11298:2720..27591695995629.978683-CDS-E-fasciculatus_F_contig11298:2720..2759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11298 2721..2759 +
1622927637.282617-CDS-E-fasciculatus_F_contig11298:3258..32821622927637.282617-CDS-E-fasciculatus_F_contig11298:3258..3282Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11298 3259..3282 +
1695995629.9875565-CDS-E-fasciculatus_F_contig11298:3258..32821695995629.9875565-CDS-E-fasciculatus_F_contig11298:3258..3282Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11298 3259..3282 +
1622927637.2927666-CDS-E-fasciculatus_F_contig11298:3974..42231622927637.2927666-CDS-E-fasciculatus_F_contig11298:3974..4223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11298 3975..4223 +
1695995630.043893-CDS-E-fasciculatus_F_contig11298:3974..42231695995630.043893-CDS-E-fasciculatus_F_contig11298:3974..4223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11298 3975..4223 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927637.3050103-UTR-E-fasciculatus_F_contig11298:4223..45021622927637.3050103-UTR-E-fasciculatus_F_contig11298:4223..4502Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11298 4224..4502 +
1695995630.05545-UTR-E-fasciculatus_F_contig11298:4223..45021695995630.05545-UTR-E-fasciculatus_F_contig11298:4223..4502Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11298 4224..4502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11298.1035.1

>prot_E-fasciculatus_F_contig11298.1035.1 ID=prot_E-fasciculatus_F_contig11298.1035.1|Name=mRNA_E-fasciculatus_F_contig11298.1035.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
KSVVPAGLVRKAAHLLLFRPLHLLLLQPRVRLTVPNVFGSLRLRVLYVRS
LSSFRVGSLSSQSFLETIWAYSVDVLNCRHDRAWVRSFNPTTTQTRTMHC
RPA*
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mRNA from alignment at E-fasciculatus_F_contig11298:2721..4502+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11298.1035.1 ID=mRNA_E-fasciculatus_F_contig11298.1035.1|Name=mRNA_E-fasciculatus_F_contig11298.1035.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1782bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11298:2721..4502+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGAGTGTTGTCCCGGCGGGACTTGTGAGGAAAGCTGCGGTGAGTGATAT
CCGCCGTTATCCTTCGTCACGTAGGATTCAAGTTTGACGGCAAGCAGCGT
GTTGTTTTAAGGTCAGGCGAAATCGGTGGAATATACAGTGGTATTTTCGC
GTTGAATATATACAGTGGTATTTTCGCGTTGAACTGCTCTGTTAGGGCGG
GCGGCCAAAAAGCGATGCGATATATGTAGAGTATGGCAGGGTTGGTACGC
TAGTACCCCCCGTAGTGAACAGAAAGCCAAACGAGACCTGCAAACTGACC
CAACCATTCTACTCCCACATACCCACAGGCAGAATTTCGAAAATCTCGGT
AGAATGTTGATGGAATATTGTCTCATCACGATGATTGGGACAAACATAAA
AACTGACACAAGCGACTCAGCCTTCCCCACGTTCATGCCTCGCGTTCCCC
CTCGGTGCTACCCCCTTGTTGCCACCTCTCTCTTTTCCACCCTCGGGGTT
ATCCTCGGTGCTACTTCCGGTGTTCCTATCACCACCAGCACCTGCTCCTG
TTCCGTCCCCTGGTAAGATTGATGGTTGCCGAATCGCGTTGGCTCGCTAC
ACTTAAGCTTGGTCGTCGGAGTACATACGATCAGCTTCGGTGATGGACAA
CGGCCCGGATCACCGTGATCGGAATTGTCTACGAGATTTGTTTTGGGCGT
GAACTTCTGCACTGTTGCAACATTTCAACCTTTTGATAAGACGGCCACCT
GCATGGAAGTGGAAGAGGAGTCCGTATTTCTTCTGTCCCGCAGTGTTGAG
GCTGGTGGTAGGTCGCGGGGAAAAATACCAAGAACAGCCCACGTGTACCA
GGGGTCGCATGGTCGCACTGCTTCGAATCACTGCGTGCATGTGGTGCACA
TCTGTAGCTCGTGCATTCCACGAACTCCTGCCGCTGTAATGTGTTGCATC
ACACACCCCAAGACGAAACGAGACCTGCACAATGTCAGCAGCATATGAAC
GATGTATTTTCAGGCGGCCCATATATTCTACTGCCGAATAAATACCCACG
CCTTGGCAACAATAGTCTTTCACGAGCTCCGTAGAAACTCGATGGGTTAG
TGCTTGGGATAACGTAAACGACGTACACACGATATATGTCTTGATTGATG
TCTGCACGCACTCAGTCGTCTCTGCGTTCATGCCTCACGTCCCCTCTCGT
TTCCACCCTCGGGGCTATCCTGGGCGGTACTCTCGGCGTTCCTACCACCA
CCAGCACCTACTCCTTCTCCAGCCCCGGGTAAGATTGACCGTGCCCAACG
TTTTTGGCTCACTGCGCCTGCGCGTGTTGTACGTCCGAAGCTTGTCATCA
TTTCGGGTCGGATCACTTTCATCGCAATCGTTTTTAGAGACTATCTGGGC
GTATAGTGTTGACGTTTTGAATTGTCGGCACGATCGAGCTTGGGTACGCT
CTTTCAACCCTACTACAACCCAAACACGGACGATGCACTGCCGCCCTGCT
TAGACGCAGGGACGGCTCAGATCTCTTGTGGTGGGTAGCGGGCGTGTGCC
GGGGTCGTCGTTTCCGCAGTGCTCAGCAGCACTACGTTCATGTGGTCCAC
ATCTGTACGGCCCGGTTTCACCCTCTGTCTTTCTGCTGTAGGGAAAGCCA
TCACGACCGGCAAACGAACTGAGGCCGAGTCTTACGGTCTGATTTTCTTG
GATTGTTTTTTATCCTCTCTCGGGGGGGGGTGGTCTGCACGGGAAAAATT
ATCCAGATCCAATCGACCGTCTTATGGTTCCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11298:2721..4502+

>mRNA_E-fasciculatus_F_contig11298.1035.1 ID=mRNA_E-fasciculatus_F_contig11298.1035.1|Name=mRNA_E-fasciculatus_F_contig11298.1035.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11298:2721..4502+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGAGTGTTGTCCCGGCGGGACTTGTGAGGAAAGCTGCGAAGAGTGTTGT
CCCGGCGGGACTTGTGAGGAAAGCTGCGCACCTGCTCCTGTTCCGTCCCC
TGCACCTGCTCCTGTTCCGTCCCCTGCACCTACTCCTTCTCCAGCCCCGG
GTAAGATTGACCGTGCCCAACGTTTTTGGCTCACTGCGCCTGCGCGTGTT
GTACGTCCGAAGCTTGTCATCATTTCGGGTCGGATCACTTTCATCGCAAT
CGTTTTTAGAGACTATCTGGGCGTATAGTGTTGACGTTTTGAATTGTCGG
CACGATCGAGCTTGGGTACGCTCTTTCAACCCTACTACAACCCAAACACG
GACGATGCACTGCCGCCCTGCTTAGCACCTACTCCTTCTCCAGCCCCGGG
TAAGATTGACCGTGCCCAACGTTTTTGGCTCACTGCGCCTGCGCGTGTTG
TACGTCCGAAGCTTGTCATCATTTCGGGTCGGATCACTTTCATCGCAATC
GTTTTTAGAGACTATCTGGGCGTATAGTGTTGACGTTTTGAATTGTCGGC
ACGATCGAGCTTGGGTACGCTCTTTCAACCCTACTACAACCCAAACACGG
ACGATGCACTGCCGCCCTGCTTAG
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