mRNA_E-fasciculatus_F_contig11276.1014.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11276.1014.1
Unique NamemRNA_E-fasciculatus_F_contig11276.1014.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11276.1014.1 vs. uniprot
Match: D7FMN8_ECTSI (Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN8_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 1.400e-83
Identity = 231/239 (96.65%), Postives = 234/239 (97.91%), Query Frame = 1 
Query:    1 KEIAYLMRPDERHAFPEFTALKRKSALPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EGGPTEERIDPSGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKVYQSTTSKGRVGKGGDNAKAKPKGSNLK 714
            +EIAYLMRPDERHAFPEF ALKRKSALP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EGGP +ERIDPSGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKVYQSTTSKGRVGKGGDNAKAK KG+NLK
Sbjct:  598 QEIAYLMRPDERHAFPEFAALKRKSALPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGPAKERIDPSGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKVYQSTTSKGRVGKGGDNAKAKAKGTNLK 836
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BLAST of mRNA_E-fasciculatus_F_contig11276.1014.1 vs. uniprot
Match: A0A6H5JJC0_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC0_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 1.920e-81
Identity = 225/242 (92.98%), Postives = 229/242 (94.63%), Query Frame = 1 
Query:    1 KEIAYLMRPDERHAFPEFTALKRKSALPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----EGGPTEERIDPSGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKVYQSTTSKGRVGKGGDNAKAKPKGSNLK 714
            +EIAYLMRPDERHAFPEF ALKRKSAL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    EGGP EERIDPSGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKVYQSTTSKGR GKGGDNAKA  KG+++K
Sbjct:  226 QEIAYLMRPDERHAFPEFAALKRKSALQTPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGPAEERIDPSGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKVYQSTTSKGRQGKGGDNAKANAKGNDVK 467
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BLAST of mRNA_E-fasciculatus_F_contig11276.1014.1 vs. uniprot
Match: UPI0006B0DB64 (uncharacterized protein LOC106460649 isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0DB64)

HSP 1 Score: 58.9 bits (141), Expect = 2.190e-6
Identity = 28/73 (38.36%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:  409 VLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRA 627
            +LE S L+PFL+Q LE +S +++ RH  +Y ++ +L++ IA   +L PL GP+  QK  +S+++ L +L  +A
Sbjct:  545 ILENSSLIPFLEQYLEQESFVEISRHTGIYKAIIQLLKEIAQQPTLVPLFGPLPNQK--QSIHQFLGRLAQQA 615
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11276.1014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMN8_ECTSI1.400e-8396.65Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5JJC0_9PHAE1.920e-8192.98UBC core domain-containing protein n=1 Tax=Ectocar... [more]
UPI0006B0DB642.190e-638.36uncharacterized protein LOC106460649 isoform X1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11276contigE-fasciculatus_F_contig11276:591..3664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.1
Seed ortholog evalue1.2e-70
Seed eggNOG ortholog2880.D7FMN8
KEGG koko:K10582,ko:K10586
KEGG Pathwayko04120,ko04214,ko04215,map04120,map04214,map04215
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759,KOG0897@1,KOG0897@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size717
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11276.1014.1prot_E-fasciculatus_F_contig11276.1014.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11276 591..3646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927635.2817101-CDS-E-fasciculatus_F_contig11276:590..6771622927635.2817101-CDS-E-fasciculatus_F_contig11276:590..677Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11276 591..677 -
1695995628.9334886-CDS-E-fasciculatus_F_contig11276:590..6771695995628.9334886-CDS-E-fasciculatus_F_contig11276:590..677Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11276 591..677 -
1622927635.298445-CDS-E-fasciculatus_F_contig11276:1322..14391622927635.298445-CDS-E-fasciculatus_F_contig11276:1322..1439Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11276 1323..1439 -
1695995628.9468796-CDS-E-fasciculatus_F_contig11276:1322..14391695995628.9468796-CDS-E-fasciculatus_F_contig11276:1322..1439Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11276 1323..1439 -
1622927635.3194673-CDS-E-fasciculatus_F_contig11276:2081..22141622927635.3194673-CDS-E-fasciculatus_F_contig11276:2081..2214Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11276 2082..2214 -
1695995628.9594498-CDS-E-fasciculatus_F_contig11276:2081..22141695995628.9594498-CDS-E-fasciculatus_F_contig11276:2081..2214Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11276 2082..2214 -
1622927635.3336697-CDS-E-fasciculatus_F_contig11276:2634..28361622927635.3336697-CDS-E-fasciculatus_F_contig11276:2634..2836Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11276 2635..2836 -
1695995628.9707756-CDS-E-fasciculatus_F_contig11276:2634..28361695995628.9707756-CDS-E-fasciculatus_F_contig11276:2634..2836Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11276 2635..2836 -
1622927635.3446395-CDS-E-fasciculatus_F_contig11276:3486..36461622927635.3446395-CDS-E-fasciculatus_F_contig11276:3486..3646Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11276 3487..3646 -
1695995628.981337-CDS-E-fasciculatus_F_contig11276:3486..36461695995628.981337-CDS-E-fasciculatus_F_contig11276:3486..3646Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11276 3487..3646 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927635.3565466-UTR-E-fasciculatus_F_contig11276:3646..36641622927635.3565466-UTR-E-fasciculatus_F_contig11276:3646..3664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11276 3647..3664 -
1695995628.9914038-UTR-E-fasciculatus_F_contig11276:3646..36641695995628.9914038-UTR-E-fasciculatus_F_contig11276:3646..3664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11276 3647..3664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11276.1014.1

>prot_E-fasciculatus_F_contig11276.1014.1 ID=prot_E-fasciculatus_F_contig11276.1014.1|Name=mRNA_E-fasciculatus_F_contig11276.1014.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=233bp
MRPDERHAFPEFTALKRKSALPIPPPPPPPAGGSNPEEELEEEEGDGEGS
VVAGKGKARGQAGRGEESAGVSAAPAEGNGIGPGDGAGGGGGGGEGGPTE
ERIDPSGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSL
LDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLG
DRAKVYQSTTSKGRVGKGGDNAKAKPKGSNLK*
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mRNA from alignment at E-fasciculatus_F_contig11276:591..3664-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11276.1014.1 ID=mRNA_E-fasciculatus_F_contig11276.1014.1|Name=mRNA_E-fasciculatus_F_contig11276.1014.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3074bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11276:591..3664- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGAAATCGCATACCTCATGAGACCCGACGAGCGGCATGCCTTCCCGGA
GTTTACCGCGTTGAAGAGGAAGTCCGCGCTCCCGATCCCACCGCCGCCGC
CGCCGCCTGCGGGAGGCTCGAATCCAGAGGAAGAGTTGGAGGAGGAGGAG
GGGGATGGGGAGGGTTCCGTTGTCGCAGGTAAAGTGAAGCAGTCTCTCGG
GTTTATGGGGAAGGGGAAGGGCCGTTGTTGCGGGAAGCGGGGGGATGGAT
TTTTAAGGTGTTAGCAAGAATTATATAACGTGTTGTGTTGCCAAACCGTG
GTATATTCCATGGTACGGATTAAGCGAAACCGGATTGAAGAGAGTTTGTT
TGGTCTGTCCCTACCCTCTCTCAATGTACACCGTAGCCGCTACTGTAGCA
ATTTCGCTGCCTTATGCGGCAGAAAACCGTGACAGACACAGACACGACAT
ACACCTGAGGTCACGGCGTTCTCCGAGCAGTATGAATGCGATCAACATCA
CCCCTCTGACCGATTCGAGGTAAAGTATTTTTCCAACTTCTAGGCCCCCT
CGTCTCTTCTACGCAGCATTGGTGCTGGTGTAGATTGGACGCTTGACACA
ACGCCACCGGGGTACAGTAGTTGGGTTTGCGTGTCATTGAAACTCAAAAT
GCAAGGGGCGTTGGACAGAACATACCCTACACATGCTTTTTTCAAGTGAT
GTCACTTGAGTTTTTTTATTTTCCGTCGATTTCGATGACAACGCTGTTTG
TCGCCGCCGCCGCCGCCGCCGTCGCCGCTGCTGTTGCTGTTGCTTCTGCT
GCCGCTGTTGTAGCCGGCAAGCGAAAAGGGAAAGGCAAGGCCCGGGGGCA
GGCAGGGAGAGGCGAAGAATCAGCAGGGGTTTCCGCTGCCCCGGCGGAGG
GCAACGGAATTGGGCCTGGAGACGGGGCGGGGGGGGGGGGAGGGGGGGGA
GAGGGAGGTCCTACGGAAGAGCGAATCGACCCCAGTGGGAGAAAGAGAAA
AAAACTCACGTTTGCTATGGAGGAGTACAGGTATGTTTTGATGATGTTAT
TGTTGTTGTCTTGGCATTAAGTTACATTCCGGTCTCTGCTAAGCGCAGGC
ACGCCACCATGTTTTTTCTCGTCGCAAGGCATTCATTGTAGGGTACGGTA
AATGGTTCCTATCTGTAGGCTGTATATAAAAAAAAAAAACGCCGGTCGCC
CTGTAGCTCTAAGACCGGTTGAATCACGTGAAAAAGATGGGAAATGTTTT
CTTTCAAGTTGCCTCATACTCAGAAGAGCGCGGGGTGCCCGGTGATAGGC
CAGCCGAATCCCTTGGTGTTTATGCGGCCTCTGACAGAAGAAATAATTGT
AGAGTCGCCCATGCATGTGCGCACAAATGTAACCTCTCTTGGCCTTTTGA
TCTCACACGTGCGGAACGAAACTGCCAAACTGCCGTGTGCGTCACGTTAG
GGTGGACAGCGTCAACTCTAGCCTGAGGGTGTTGGAGGAGTCGTGCCTGG
TTCCGTTCCTGCAGCAGCTGCTCGAGAACGACTCCCTCCTCGACGTCGAT
AGGCACGCCGCCCTTTATACCTCCGTCTTCAAGGTGATTTGACTTGTTAG
GACATATAAGGGTACTGTACCTTGGGAACGTTCTCTCACGACAGCAGCCC
ACATGCCAACGGTTAGGAGAAGTCGATGCCACAGCCACGTTTGGATATGT
AAGGGTACCTTCCGACCCTCCTTACGACAGCAGCCGACATGCCACCTGTT
GCGACACAGTAGTGGGGTTCCTTTCGAATCTCATGACCAAAGAGCCACTT
TGGGACATACAAACGACACAGCAGTACCTTCCGAACCGCTCAACAACAAC
AGCCACATGCCACAGGTTAGGACGAAGCATGGATTCGGCGAATACACTCT
ATGGGATTGCATAGCTGAATCGAACCCACCCGAGAAGGGAGGAGGTCATT
CTAAGCATAGCCGGAATACGTGCTCAAACGACAAGCATCAGTTAAGTTAG
AGGTACAGCTGTCGTGCCCGCTTTACGGACACTGACCTGACCTAATGAAT
TTGCAGAACATGAATACCCCCTGTGCGCCTAAAAATCCCTCTCTGGTGGT
CAACCAACCCTCCAACTGCCCTACACTGATTGATATAGGCAGTACATCCT
CTTCTAGACATTCATGTCTGACCATCCCCCTCCCCCCCCCTGAACATGTC
GTGACGACTATTTTTTTTTGTCTAGTTGGTGCGGTGCATCGCGTCTTGGC
GATCCCTCCATCCCCTTCTTGGGCCGATGAAGGGGCAGAAGCCACGCCGC
AGCCTCTACCGGCTCCTTAGCAAGCTGGGGGATCGGGCCAAGGTATGTAT
GCAGGCATGCGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTTTTGTGGTTG
TTGGTGTTTTTTGGTGTTTTTTGGTGTCGTCAAACGTCAAAGTATTTAGT
ACAACGGACTCAGAATATCCTTCATCAAACGCGATTGCTGTTACTGACAT
GCTGTGTATTGTGGTGTTGTTGTCACGTCGTCGTCGCTGTTGTAGCTGTT
GCTGTTGCTTCTCCCTGAAGTGTCATCAGTCAGTCGGTTTTCGCAACTCC
TCTCGGGTGTGGAGCACTAGCACTCGACCCTTTAAAGCCCGTCCAGGGAA
TGTGCGATCACTCACACTCGTTTTCCTTTCGCATGTGACTCGTCAAGCGG
AACCTTTGTAACACCTCTCACCCTACTTATTTGCTTTTAGCATCGGCTGT
TTTCGACGCGCCCCCCTCCCCCCTGAAAGGGCGGGAAGTGATACCGATTG
GTTGGGGAAATATTTTCGAGCCACGTTTGGTAAAGTGGCAAGGAACGATT
GGTTATCGGTGATTGGTCCTGTGGGAACAATACTCCGTCCTCTCGAGGAC
GTGTGTGGTCAATGGTCTACCGCTCAGGCACGCAAAATATGACTACCTCC
ACCACCACCAATACACATGTTTTTTTATCTCTCGAAGGTCTACCAATCGA
CGACGTCGAAAGGGAGGGTGGGCAAAGGGGGCGACAATGCCAAGGCCAAG
CCTAAGGGGAGCAACTTAAAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11276:591..3664-

>mRNA_E-fasciculatus_F_contig11276.1014.1 ID=mRNA_E-fasciculatus_F_contig11276.1014.1|Name=mRNA_E-fasciculatus_F_contig11276.1014.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1398bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11276:591..3664- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGACCCGACGAGCGGCATGCCTTCCCGGAGTTTACCGCGTTGAAGAG
GAAGTCCGCGCTCCCGATCCCACCGCCGCCGCCGCCGCCTGCGGGAGGCT
CGAATCCAGAGGAAGAGTTGGAGGAGGAGGAGGGGGATGGGGAGGGTTCC
GTTGTCGCAGATGAGACCCGACGAGCGGCATGCCTTCCCGGAGTTTACCG
CGTTGAAGAGGAAGTCCGCGCTCCCGATCCCACCGCCGCCGCCGCCGCCT
GCGGGAGGCTCGAATCCAGAGGAAGAGTTGGAGGAGGAGGAGGGGGATGG
GGAGGGTTCCGTTGTCGCAGGGAAAGGCAAGGCCCGGGGGCAGGCAGGGA
GAGGCGAAGAATCAGCAGGGGTTTCCGCTGCCCCGGCGGAGGGCAACGGA
ATTGGGCCTGGAGACGGGGCGGGGGGGGGGGGAGGGGGGGGAGAGGGAGG
TCCTACGGAAGAGCGAATCGACCCCAGTGGGAGAAAGAGAAAAAAACTCA
CGTTTGCTATGGAGGAGTACAGGGAAAGGCAAGGCCCGGGGGCAGGCAGG
GAGAGGCGAAGAATCAGCAGGGGTTTCCGCTGCCCCGGCGGAGGGCAACG
GAATTGGGCCTGGAGACGGGGCGGGGGGGGGGGGAGGGGGGGGAGAGGGA
GGTCCTACGGAAGAGCGAATCGACCCCAGTGGGAGAAAGAGAAAAAAACT
CACGTTTGCTATGGAGGAGTACAGGGTGGACAGCGTCAACTCTAGCCTGA
GGGTGTTGGAGGAGTCGTGCCTGGTTCCGTTCCTGCAGCAGCTGCTCGAG
AACGACTCCCTCCTCGACGTCGATAGGCACGCCGCCCTTTATACCTCCGT
CTTCAAGGGTGGACAGCGTCAACTCTAGCCTGAGGGTGTTGGAGGAGTCG
TGCCTGGTTCCGTTCCTGCAGCAGCTGCTCGAGAACGACTCCCTCCTCGA
CGTCGATAGGCACGCCGCCCTTTATACCTCCGTCTTCAAGTTGGTGCGGT
GCATCGCGTCTTGGCGATCCCTCCATCCCCTTCTTGGGCCGATGAAGGGG
CAGAAGCCACGCCGCAGCCTCTACCGGCTCCTTAGCAAGCTGGGGGATCG
GGCCAAGTTGGTGCGGTGCATCGCGTCTTGGCGATCCCTCCATCCCCTTC
TTGGGCCGATGAAGGGGCAGAAGCCACGCCGCAGCCTCTACCGGCTCCTT
AGCAAGCTGGGGGATCGGGCCAAGGTCTACCAATCGACGACGTCGAAAGG
GAGGGTGGGCAAAGGGGGCGACAATGCCAAGGCCAAGCCTAAGGGGAGCA
ACTTAAAGTGAGTCTACCAATCGACGACGTCGAAAGGGAGGGTGGGCAAA
GGGGGCGACAATGCCAAGGCCAAGCCTAAGGGGAGCAACTTAAAGTGA
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