mRNA_E-fasciculatus_F_contig11260.1004.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11260.1004.1
Unique NamemRNA_E-fasciculatus_F_contig11260.1004.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: D7G1G2_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G2_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 2.080e-56
Identity = 130/137 (94.89%), Postives = 134/137 (97.81%), Query Frame = 1
Query:    1 RQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSNEVEASAA 411
            +QYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFD+EISDNLCT NEEGIRLSMGSSYNKIFDNQVIDTAGR+I MYL S+EVEASAA
Sbjct:  136 QQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDIEISDNLCTQNEEGIRLSMGSSYNKIFDNQVIDTAGRSIWMYLGSDEVEASAA 272          
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.580e-47
Identity = 118/135 (87.41%), Postives = 126/135 (93.33%), Query Frame = 1
Query:    7 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSNEVEASAA 411
            YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRC    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX +GSGSACIAIFESF +EISDN+CTDNEEGIRLSMGSSYNKIFDNQVIDTAGR++ +YL S+E+ ASAA
Sbjct:  277 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTGSGSACIAIFESFGIEISDNVCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRSLWLYLGSDEIIASAA 411          
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: A0A6H5LHR7_9PHAE (MEP7d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHR7_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.480e-34
Identity = 96/131 (73.28%), Postives = 99/131 (75.57%), Query Frame = 1
Query:   73 GNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGR------------------TISMYLDSNEVEASAA 411
            GNHGIIASKRCNDVS           XXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFD+EISDNLCT+NEEGIRLSMGSSYNKIFDNQVIDTAGR                   I MYL S+EVEASAA
Sbjct:   21 GNHGIIASKRCNDVSIQNNVVYDNALXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDIEISDNLCTNNEEGIRLSMGSSYNKIFDNQVIDTAGREFCYHIMPQCGWLTYPRGAIWMYLGSDEVEASAA 151          
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: A0A6H5L0I1_9PHAE (MEP7a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I1_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 8.510e-31
Identity = 63/99 (63.64%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   73 GNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTI 369
            GNHGIIASKRCNDVS                              SGSGSACIAIFESF +EISDN+CTDNEEGIRLS+GSSYNKIFDNQVIDTAG  I
Sbjct:   10 GNHGIIASKRCNDVSIQNNVVYDNALHGIMLHRSSDDGIIRNNTVSGSGSACIAIFESFGIEISDNVCTDNEEGIRLSLGSSYNKIFDNQVIDTAGHEI 108          
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: A0A6H5K1D5_9PHAE (MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.320e-16
Identity = 51/133 (38.35%), Postives = 71/133 (53.38%), Query Frame = 1
Query:    7 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS--GSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSNEVE 399
            YG+DPHDDSD L IH+N+VY+N  HGIIASKRCN+VS                                 G+G A +A+ ES + EIS N+   N+ GIR+S+G   N +++N + +T+   I  Y  S+  E
Sbjct:   73 YGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVYNNTMTNTSQYAIYTYQGSDPAE 205          
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: D8LHA3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA3_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.520e-16
Identity = 51/133 (38.35%), Postives = 68/133 (51.13%), Query Frame = 1
Query:    7 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSNEVE 399
            YGFDPHDDSD L IH+N VY NG HGIIASKRCN VS                                  +G A +A+ ESF+ ++S+N   +N+ G+R S+G + N   DN + + A      YL S+E +
Sbjct:   80 YGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIRGNEVYGGAETSAGIFLHRSSDDAIAKGNYVHENGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSDNTISNNAEYNAYSYLGSDETD 212          
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.640e-16
Identity = 57/133 (42.86%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 RQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSNE 393
            R+YGFDPHDDSD L IH+N VY NGNHGIIASKRCN   XXXXXXXX                          +G A +A+ ESF+ ++S+N   DN+ G+R+S+G + N    N + D++   +  Y  S++
Sbjct:  105 REYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNYXXDNGDAGMALMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDD 237          
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 8.130e-16
Identity = 61/130 (46.92%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    7 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSG--SACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSN 390
            YGFDPHDDSD L IH+N VY+NG HGIIASKRCN VS                    XXXXXXXXXX       A +A+ ESF+ ++SDN+  +N+ GIR S+GS  N  F+N +  +   +   YL S+
Sbjct:  281 YGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGATSSAGIFLHRXXXXXXXXXXXXXXXXDAGLAMMESFNADVSDNIFENNKYGIRFSVGSGRNVFFNNVISGSTRYSTYSYLGSD 410          
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.830e-15
Identity = 48/116 (41.38%), Postives = 63/116 (54.31%), Query Frame = 1
Query:    7 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVI 348
            YGFDPHDDSD L +H+N VY+NG HGIIASKRCN VS                                  +G A +A+ ESF+ ++SDN+  +N+ G+R+S+G   N IF   VI
Sbjct:   48 YGFDPHDDSDFLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYGVRISVGCGRN-IFSKNVI 162          
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.190e-15
Identity = 51/133 (38.35%), Postives = 70/133 (52.63%), Query Frame = 1
Query:    7 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS--GSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSNEVE 399
            YG+DPHDDSD L IH+N+VY+N  HGIIASKRCN+VS                                 G+G A +A+ ES + EIS N+   N+ GIR+S+G   N + +N + +T+   I  Y  S+  E
Sbjct:  373 YGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVSNNTMTNTSQYAIYTYQGSDPAE 505          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1G2_ECTSI2.080e-5694.89Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G1G1_ECTSI1.580e-4787.41Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5LHR7_9PHAE2.480e-3473.28MEP7d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5L0I1_9PHAE8.510e-3163.64MEP7a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5K1D5_9PHAE1.320e-1638.35MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LHA3_ECTSI1.520e-1638.35Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAJ9_9PHAE3.640e-1642.86Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ7_9PHAE8.130e-1646.92Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
Q7XAK0_9PHAE1.830e-1541.38Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
D8LD45_ECTSI2.190e-1538.35Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11260contigE-fasciculatus_F_contig11260:44..3120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog2880.D7G8D9
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Ec32 ortholog descriptionMannuronan C-5-epimerase C-terminal fragment
Ec32 orthologEc-07_000900.1
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size411
Cds size411
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11260.1004.1prot_E-fasciculatus_F_contig11260.1004.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11260 44..3120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927634.2635956-CDS-E-fasciculatus_F_contig11260:43..931622927634.2635956-CDS-E-fasciculatus_F_contig11260:43..93Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11260 44..93 -
1695995628.4098186-CDS-E-fasciculatus_F_contig11260:43..931695995628.4098186-CDS-E-fasciculatus_F_contig11260:43..93Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11260 44..93 -
1622927634.2806275-CDS-E-fasciculatus_F_contig11260:1562..16731622927634.2806275-CDS-E-fasciculatus_F_contig11260:1562..1673Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11260 1563..1673 -
1695995628.4215975-CDS-E-fasciculatus_F_contig11260:1562..16731695995628.4215975-CDS-E-fasciculatus_F_contig11260:1562..1673Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11260 1563..1673 -
1622927634.293574-CDS-E-fasciculatus_F_contig11260:1997..21741622927634.293574-CDS-E-fasciculatus_F_contig11260:1997..2174Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11260 1998..2174 -
1695995628.4298823-CDS-E-fasciculatus_F_contig11260:1997..21741695995628.4298823-CDS-E-fasciculatus_F_contig11260:1997..2174Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11260 1998..2174 -
1622927634.3079813-CDS-E-fasciculatus_F_contig11260:2563..25921622927634.3079813-CDS-E-fasciculatus_F_contig11260:2563..2592Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11260 2564..2592 -
1695995628.4447367-CDS-E-fasciculatus_F_contig11260:2563..25921695995628.4447367-CDS-E-fasciculatus_F_contig11260:2563..2592Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11260 2564..2592 -
1622927634.321594-CDS-E-fasciculatus_F_contig11260:3076..31201622927634.321594-CDS-E-fasciculatus_F_contig11260:3076..3120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11260 3077..3120 -
1695995628.4543061-CDS-E-fasciculatus_F_contig11260:3076..31201695995628.4543061-CDS-E-fasciculatus_F_contig11260:3076..3120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11260 3077..3120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11260.1004.1

>prot_E-fasciculatus_F_contig11260.1004.1 ID=prot_E-fasciculatus_F_contig11260.1004.1|Name=mRNA_E-fasciculatus_F_contig11260.1004.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=137bp
RQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSIQNNVVYDNAL
HGIMLHRSSDQGIIRNNTVSGSGSACIAIFESFDVEISDNLCTDNEEGIR
LSMGSSYNKIFDNQVIDTAGRTISMYLDSNEVEASAA
back to top

mRNA from alignment at E-fasciculatus_F_contig11260:44..3120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11260.1004.1 ID=mRNA_E-fasciculatus_F_contig11260.1004.1|Name=mRNA_E-fasciculatus_F_contig11260.1004.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3077bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11260:44..3120- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCAGTACGGCTTCGATCCCCACGACGATTCGGACAACTTGCGGTGAGC TTCGATTGGTGTGGTGCATGTGTATGTTCTTCACACCGTTTTCTCGATGA ATGAAAAAAACAAACAAACAACACTCGCAATACCAGCGATGCTTCAAGTG GAATCGACTGATCGATTGTGTGAGGCATGTCTCATTTCCCTCTGCTTAGT TGTAGGAGTCGATGCATTCAATCATTGTCCATGTAGACGTGTGAATTGTA TCGTGTTCATATTTGGTTTGCCTTTGATCTTGCCGCAGTTTATTTTTTAT TTTGTGTACGTCTTCCCGGTTGCCACCCTCTCCCGTCCTCACCACCGCTG CCAAGTGGGGATTATCATGCGCGTTTTGCATGTTTCACTCCGTGTTTTAT GCCTCGGCCGTTGTGTGTCGCCCTCTCACTGGCGTCTGGCTCCCCATCCC CGTACCCCCGCTCACGCCCACTCTTCGCATTCTTGGCTGCCGGCACGTGT CCACGACTTTCATGTTGCGACGAGCCAGGATTCACAACAACATCGTGTAC GAGAACGGTGAGTAGGACACACGTCTTGTATTTATCTGTCTGGGGGCATT TGAGGAGGCCGCGAGGAGATTCCGCAGCAATATTGTTTGCTGTGGCGTGT TAAATGTGTAAAGTGACAGGAGCGTGGAAGGTGTTGAACGTGCGAGTGCC CAAAGGCGCGAGGGCTGCAAACCAGTGGAACAGACGCAGCAGCTGAGGCA TTTTGCTGCGTCGTGTGTGACCGCTGTTGTGTCGCCGTTGTGAGCTGCAC AGAAGCAAAAAATCTAGAACCAGTGGTGGAGAGATTGTTGAGGCGACGCT CGAGGCGATGTGCTTCTCTTGTTCACTGAAGCCAGGCTTGGCGTTAACCT TGCTGACTCTGGCTATGTCCTCTCTCATTGTTCGTTTGTGTTGCAGGCAA CCACGGTATCATCGCGTCCAAGAGGTGCAACGACGTGTCCATCCAGAACA ACGTGGTGTATGACAACGCCCTCCACGGCATCATGCTCCACCGATCCTCC GATCAGGGAATCATCAGAAACAACACCGTTTCCGGCTCCGGCAGCGCTTG CATCGCCATTTTCGAGTCCTTCGGTAGGCCGTGTGATCGCGTTGTTTGCT AAATGAACCAGTTGGCGTGGCGTTTGCATTTCATTCGGTGCATATAAAAC TCTTACATTTTACATTCTGAAGGTGGCGTTATTGTTTGTCCTTCTTGGAG ATGATTTCGCATTGTTGTCTGCTCATCGTGATTCCTTTCTGTCTGTGCTA CTACATATACATACATAGGATTACCGGCTGACGTAAGTGAGAGTGCCTGC TCCATCTGTCTTTCTCTCTCTGCCTCTGTCTCTGCCTCTGTCTCTGTCTC TATCTCTCTCTGATGGTTTCGTCCGTGCTTCGTTGTGCACGACGCAGACG TCGAGATCAGCGACAACCTCTGCACAGACAACGAGGAGGGCATCCGGTTG TCCATGGGATCGTCCTACAACAAGATCTTCGACAACCAAGTCATCGACAC CGCTGGCCGTGAGTTCTTACTACCTCATTGTTTGGTGGCAACCCCTATAT GCTTAGTCAGCCGTCGTCGGCTCAGGGTGCAGTTACCTCCCGACCTTCGT TTCTTCCGTGCGTGCCCATGCCTTTTTTGTTGTTATGTGTAGGTGTCTTG GGTTTAGCTGGTAACGGTGGGACAAGGGACAGGACCAGTTTCCCTTCGCG TGCGTGCTTCTTTGGCTTGGTTTATTGCTCCCGAACGTTAGACAAGGGAC GCGACCAATCGGCGATTCGTGTTTGTGCCTGTGGTTCACAAGAGCTATTT TCATTATTCCGTGGTGTAGCGAGCGCCTCCGTTAATATGGGGATGAGGTC CGTCATGGCAACACGACAGAATGTGGGTCACTTACTCCCGTCCGCGGGAC GTATGCCACATTGAAGTTCGCGGAATCGGTTTCCTTCTGCTTCGGCGGAT CATGAGGAATGTTCCAGATATGCCGCCGTGTGCCTCATTTCGTTTTCGAT ACGTCCATTGGCTCTTCTTCTTGTCGTAGTTTGCTGCATGTCTTTCATTC CACAAGGTGGAAGGCGTTGTTCGTGTTTTTTTCTATTTCATTATGCAGGA TGCGTTTTATTCCGTTTGCGAGGGTTGTGATTTGTTCCTTACGTTCGGAC ATATTCCTCGTCCCAAGAGCGGAATGTTTTCGCTTATTCACGTTACAGTG GAGTTCCCCGAATAAGGCGGTCGCCTAATATAGGCGGGTGAAATCGGCTG GCATAAGTAGAATAATCAAGTTGTTCTAACATTGAATGAGGAGGCTACAC CATACAGGCCGTCATTGTCAGCCGCTCCACCACCGGGCCCCCACATGTGT TGAGTTGGGACCTTGTGCTCTGTGCAGCTTCATCCATCCCCCCAAGCAGT ACCCCCTGCCCCATTCATTCCCCGGTCCTGTGAGTGAATCAGTCATCAAT GCATTTGTGAAGTGGATTCATTTGATTTCCTGCGGCGGGTGGTGTGATGG CCTGTATGTTCGTTTGCCTATACGTGAATGCTCGTGTGTGTCGATTGGTT ATTTTGCAGTGTCCCTGTTGGTTGTTGCTGTTGGAAAATCCCACGCTCTT TCTCCCAAGCCTTCTGTCCACACTTGGGCTTCCATGGCCACATGCCATCC CTTCCCCGCCTTGGTTTTTTTCGATTTCACTTCAAGATCTATCTGGATGT ACCCGAGATCCAAAGAGATCGGTGAGCCTCAGCCTTCACAGACTCATGCC CCGATTTTTTTTTCGGTTATGTTTCTAGGGCCATCTGGATGTACCTGAGA TCCGACGAGACCGATAGGCCCCAGCCTTCACCCCCCCGCCCCCTCCCCGC CTCCTTTTTTTTCGGTTACGCTACAGGGGTCATCGGGATGTATCTGAGAC CGGACGAGATCGATATAGGCTTGCGCCTTCACAGACTCATGCAACCCCAT TTTTTCAATTATTCGGTTATGCGACAGGGACCATCTCGATGTACCTCGAC TCCAACGAGGTCGAGGCCTCCGCCGCG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11260:44..3120-

>mRNA_E-fasciculatus_F_contig11260.1004.1 ID=mRNA_E-fasciculatus_F_contig11260.1004.1|Name=mRNA_E-fasciculatus_F_contig11260.1004.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=822bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11260:44..3120- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCAGTACGGCTTCGATCCCCACGACGATTCGGACAACTTGCGAGGCAG
TACGGCTTCGATCCCCACGACGATTCGGACAACTTGCGGATTCACAACAA
CATCGTGTACGAGAACGGATTCACAACAACATCGTGTACGAGAACGGCAA
CCACGGTATCATCGCGTCCAAGAGGTGCAACGACGTGTCCATCCAGAACA
ACGTGGTGTATGACAACGCCCTCCACGGCATCATGCTCCACCGATCCTCC
GATCAGGGAATCATCAGAAACAACACCGTTTCCGGCTCCGGCAGCGCTTG
CATCGCCATTTTCGAGTCCTTCGGCAACCACGGTATCATCGCGTCCAAGA
GGTGCAACGACGTGTCCATCCAGAACAACGTGGTGTATGACAACGCCCTC
CACGGCATCATGCTCCACCGATCCTCCGATCAGGGAATCATCAGAAACAA
CACCGTTTCCGGCTCCGGCAGCGCTTGCATCGCCATTTTCGAGTCCTTCG
ACGTCGAGATCAGCGACAACCTCTGCACAGACAACGAGGAGGGCATCCGG
TTGTCCATGGGATCGTCCTACAACAAGATCTTCGACAACCAAGTCATCGA
CACCGCTGGCCACGTCGAGATCAGCGACAACCTCTGCACAGACAACGAGG
AGGGCATCCGGTTGTCCATGGGATCGTCCTACAACAAGATCTTCGACAAC
CAAGTCATCGACACCGCTGGCCGGACCATCTCGATGTACCTCGACTCCAA
CGAGGTCGAGGCCTCCGCCGCGGGACCATCTCGATGTACCTCGACTCCAA
CGAGGTCGAGGCCTCCGCCGCG
back to top