mRNA_E-fasciculatus_F_contig11260.1004.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: D7G1G2_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G2_ECTSI) HSP 1 Score: 188 bits (478), Expect = 2.080e-56 Identity = 130/137 (94.89%), Postives = 134/137 (97.81%), Query Frame = 1
Query: 1 RQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSNEVEASAA 411
+QYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFD+EISDNLCT NEEGIRLSMGSSYNKIFDNQVIDTAGR+I MYL S+EVEASAA
Sbjct: 136 QQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDIEISDNLCTQNEEGIRLSMGSSYNKIFDNQVIDTAGRSIWMYLGSDEVEASAA 272
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI) HSP 1 Score: 169 bits (427), Expect = 1.580e-47 Identity = 118/135 (87.41%), Postives = 126/135 (93.33%), Query Frame = 1
Query: 7 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSNEVEASAA 411
YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRC XXXXXXXXXXXXXXXXXXXXXXXXXXXXX +GSGSACIAIFESF +EISDN+CTDNEEGIRLSMGSSYNKIFDNQVIDTAGR++ +YL S+E+ ASAA
Sbjct: 277 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTGSGSACIAIFESFGIEISDNVCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRSLWLYLGSDEIIASAA 411
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: A0A6H5LHR7_9PHAE (MEP7d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHR7_9PHAE) HSP 1 Score: 128 bits (322), Expect = 2.480e-34 Identity = 96/131 (73.28%), Postives = 99/131 (75.57%), Query Frame = 1
Query: 73 GNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGR------------------TISMYLDSNEVEASAA 411
GNHGIIASKRCNDVS XXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFD+EISDNLCT+NEEGIRLSMGSSYNKIFDNQVIDTAGR I MYL S+EVEASAA
Sbjct: 21 GNHGIIASKRCNDVSIQNNVVYDNALXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDIEISDNLCTNNEEGIRLSMGSSYNKIFDNQVIDTAGREFCYHIMPQCGWLTYPRGAIWMYLGSDEVEASAA 151
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: A0A6H5L0I1_9PHAE (MEP7a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I1_9PHAE) HSP 1 Score: 117 bits (293), Expect = 8.510e-31 Identity = 63/99 (63.64%), Postives = 66/99 (66.67%), Query Frame = 1
Query: 73 GNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTI 369
GNHGIIASKRCNDVS SGSGSACIAIFESF +EISDN+CTDNEEGIRLS+GSSYNKIFDNQVIDTAG I
Sbjct: 10 GNHGIIASKRCNDVSIQNNVVYDNALHGIMLHRSSDDGIIRNNTVSGSGSACIAIFESFGIEISDNVCTDNEEGIRLSLGSSYNKIFDNQVIDTAGHEI 108
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: A0A6H5K1D5_9PHAE (MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D5_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 1.320e-16 Identity = 51/133 (38.35%), Postives = 71/133 (53.38%), Query Frame = 1
Query: 7 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS--GSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSNEVE 399
YG+DPHDDSD L IH+N+VY+N HGIIASKRCN+VS G+G A +A+ ES + EIS N+ N+ GIR+S+G N +++N + +T+ I Y S+ E
Sbjct: 73 YGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVYNNTMTNTSQYAIYTYQGSDPAE 205
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: D8LHA3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA3_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 1.520e-16 Identity = 51/133 (38.35%), Postives = 68/133 (51.13%), Query Frame = 1
Query: 7 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSNEVE 399
YGFDPHDDSD L IH+N VY NG HGIIASKRCN VS +G A +A+ ESF+ ++S+N +N+ G+R S+G + N DN + + A YL S+E +
Sbjct: 80 YGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIRGNEVYGGAETSAGIFLHRSSDDAIAKGNYVHENGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSDNTISNNAEYNAYSYLGSDETD 212
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 3.640e-16 Identity = 57/133 (42.86%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 1 RQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSNE 393
R+YGFDPHDDSD L IH+N VY NGNHGIIASKRCN XXXXXXXX +G A +A+ ESF+ ++S+N DN+ G+R+S+G + N N + D++ + Y S++
Sbjct: 105 REYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNYXXDNGDAGMALMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDD 237
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 8.130e-16 Identity = 61/130 (46.92%), Postives = 77/130 (59.23%), Query Frame = 1
Query: 7 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSG--SACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSN 390
YGFDPHDDSD L IH+N VY+NG HGIIASKRCN VS XXXXXXXXXX A +A+ ESF+ ++SDN+ +N+ GIR S+GS N F+N + + + YL S+
Sbjct: 281 YGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGATSSAGIFLHRXXXXXXXXXXXXXXXXDAGLAMMESFNADVSDNIFENNKYGIRFSVGSGRNVFFNNVISGSTRYSTYSYLGSD 410
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.830e-15 Identity = 48/116 (41.38%), Postives = 63/116 (54.31%), Query Frame = 1
Query: 7 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SGSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVI 348
YGFDPHDDSD L +H+N VY+NG HGIIASKRCN VS +G A +A+ ESF+ ++SDN+ +N+ G+R+S+G N IF VI
Sbjct: 48 YGFDPHDDSDFLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYGVRISVGCGRN-IFSKNVI 162
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 2.190e-15 Identity = 51/133 (38.35%), Postives = 70/133 (52.63%), Query Frame = 1
Query: 7 YGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS--GSGSACIAIFESFDVEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRTISMYLDSNEVE 399
YG+DPHDDSD L IH+N+VY+N HGIIASKRCN+VS G+G A +A+ ES + EIS N+ N+ GIR+S+G N + +N + +T+ I Y S+ E
Sbjct: 373 YGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVSNNTMTNTSQYAIYTYQGSDPAE 505 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11260.1004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11260.1004.1 >prot_E-fasciculatus_F_contig11260.1004.1 ID=prot_E-fasciculatus_F_contig11260.1004.1|Name=mRNA_E-fasciculatus_F_contig11260.1004.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=137bp RQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSIQNNVVYDNALback to top mRNA from alignment at E-fasciculatus_F_contig11260:44..3120- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11260.1004.1 ID=mRNA_E-fasciculatus_F_contig11260.1004.1|Name=mRNA_E-fasciculatus_F_contig11260.1004.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3077bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11260:44..3120- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11260:44..3120- >mRNA_E-fasciculatus_F_contig11260.1004.1 ID=mRNA_E-fasciculatus_F_contig11260.1004.1|Name=mRNA_E-fasciculatus_F_contig11260.1004.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=822bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11260:44..3120- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |