mRNA_E-fasciculatus_F_contig11247.993.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11247.993.1 vs. uniprot
Match: D7FS04_ECTSI (Triose phosphate/phosphate translocator, non-green plastid, chloroplast, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS04_ECTSI) HSP 1 Score: 397 bits (1019), Expect = 1.620e-134 Identity = 245/288 (85.07%), Postives = 255/288 (88.54%), Query Frame = 1
Query: 1 SWLALMSALVSNLSNAMRNVLIVKNIGPAAAA-GRRRT-LKAEVSPPRSSGSSSLRPTGANTAAAADPSFFSNPVARSASALAKTRAGG------RRESGLASLAPGDTYRLLTVVGAALMIPAAAYLERDSWPRLWRAATDATAALVGRST-ADGSPPLLGEALLSAVGSAATGGKSAXXXX--VSAVAEAAVEAAARGQWAEAFRRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVTGSALAVIGVLGYSVAKARCKATT 831
SW+ L+SALVS+L NAM NVLIVKNIGPAAAA GRRR+ LK E SPPRSS +S LRPT ANTAA DPSF SNPVARSASALA TRAGG RRESGLASLA GDTYRLLTVVGAAL+IPAAAY+ERDSWPRLWRAA DATAALVGR+T ADGSPPLLGEALLSA GS GG S XXXX VSAVAEAAVEAAARGQWAEAFRRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGV GSALAVIGVLGYS++KARCK TT
Sbjct: 159 SWVGLLSALVSHLPNAMGNVLIVKNIGPAAAAAGRRRSSLKTEASPPRSSSASFLRPTAANTAA--DPSFLSNPVARSASALANTRAGGEATTRRRRESGLASLARGDTYRLLTVVGAALIIPAAAYMERDSWPRLWRAAMDATAALVGRTTSADGSPPLLGEALLSAAGS---GGDSXXXXXXRVSAVAEAAVEAAARGQWAEAFRRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVLGSALAVIGVLGYSLSKARCKTTT 441
BLAST of mRNA_E-fasciculatus_F_contig11247.993.1 vs. uniprot
Match: A0A6H5KHZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHZ8_9PHAE) HSP 1 Score: 339 bits (869), Expect = 5.840e-111 Identity = 206/254 (81.10%), Postives = 213/254 (83.86%), Query Frame = 1
Query: 97 GRRRTLKAEVSPPRSSGSSSLRPTGANTAAAADPSFFSNPVARSASALAKTRAGGR------RESGLASLAPGDTYRLLTVVGAALMIPAAAYLERDSWPRLWRAATDATAALVGRST-ADGSPPLLGEALLSAVGSAATGGKSAXXXXVSAVAEAAVEAAARGQWAEAFRRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVTGSALAVIGVLGYSVAKARCKATTTT 837
G R +L+ EVS PRSSGSS LRPT ANTA DPSF SNPVARSASALA TRAGG RESGLASLA GDTYRLLTVVGAAL+IPAAAY+ERDSWPRLWRAA DATAALVGR T ADG PPL GEALLSAVGS SA VSAVAEAAV RGQWAEAFRRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGV GSALAVIGVLGY+++KARC TTTT
Sbjct: 260 GLRFSLETEVSSPRSSGSSFLRPTAANTAG--DPSFLSNPVARSASALANTRAGGEATTQRSRESGLASLARGDTYRLLTVVGAALIIPAAAYMERDSWPRLWRAAMDATAALVGRRTSADGLPPLPGEALLSAVGSVED--SSAAGGRVSAVAEAAV----RGQWAEAFRRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVMGSALAVIGVLGYNLSKARCNTTTTT 505
BLAST of mRNA_E-fasciculatus_F_contig11247.993.1 vs. uniprot
Match: A0A835ZAU1_9STRA (Triosephosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU1_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 6.940e-10 Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 604 GVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVTGSALAVIGVLGYSVAKAR 816
G+S+ L+ ++ F LGQ+HP+THAVGNTIKR+V++ A AFG + + GSA+AV G L YS+AK++
Sbjct: 304 GLSYYLYNEVAFLALGQVHPITHAVGNTIKRVVILIASVIAFGTKMR-PMSIAGSAMAVSGTLLYSLAKSK 373
BLAST of mRNA_E-fasciculatus_F_contig11247.993.1 vs. uniprot
Match: A0A7S0L8Y2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L8Y2_9EUKA) HSP 1 Score: 68.6 bits (166), Expect = 1.730e-9 Identity = 33/78 (42.31%), Postives = 58/78 (74.36%), Query Frame = 1
Query: 583 FRRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVTGSALAVIGVLGYSVAKAR 816
++++++AG + L+ ++ F LG+++PVTHAVGNTIKR+V+I A AF + + G+ GS++A++G L YS+AK++
Sbjct: 300 WKQSLMAGAFYYLYNEVAFLALGRVNPVTHAVGNTIKRVVIIIASVIAFKTPIS-SLGIIGSSIAIVGTLLYSLAKSK 376
BLAST of mRNA_E-fasciculatus_F_contig11247.993.1 vs. uniprot
Match: A0A0M0J3T4_9EUKA (Plastidic triose-phosphate phosphate translocator n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J3T4_9EUKA) HSP 1 Score: 67.8 bits (164), Expect = 2.670e-9 Identity = 32/76 (42.11%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 589 RAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVTGSALAVIGVLGYSVAKAR 816
+++LAG + L+ ++ F LG+++PVTHAVGNT+KR+V+I A AF + +G+ GS +A++G L YS++K +
Sbjct: 264 QSLLAGAFYYLYNEVAFLALGRVNPVTHAVGNTVKRVVIIVASVIAFKTPIS-TQGIIGSTIAIVGTLLYSISKTK 338
BLAST of mRNA_E-fasciculatus_F_contig11247.993.1 vs. uniprot
Match: I2CS06_NANGC (Plastidic triose-phosphate phosphate translocator (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS06_NANGC) HSP 1 Score: 67.4 bits (163), Expect = 4.800e-9 Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 595 VLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVTGSALAVIGVLGYSVAKARCK 822
+ +G++F L+ ++ F L LHP++HAV NTIKR+V+I F F + + + GS+ AVIGVL YS+AK CK
Sbjct: 351 IYSGLTFFLYNEVAFAALESLHPISHAVANTIKRVVIIVVSVFVFRNPMS-TQSIIGSSTAVIGVLMYSLAKHYCK 425
BLAST of mRNA_E-fasciculatus_F_contig11247.993.1 vs. uniprot
Match: A0A8J6C741_DIALT (TPT domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C741_DIALT) HSP 1 Score: 66.6 bits (161), Expect = 7.470e-9 Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 562 RGQWAEAF----------RRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVTGSALAVIGVLGYSVAKARCK 822
+G WA A + ++++G+ + L+ ++ F L +HP+THAVGNTIKR+V+I A FG + + GS+LA+ GVL YS+AK CK
Sbjct: 275 KGGWAAAIAAGHTANYLLKTSLVSGLFYYLYNEVAFLCLDNVHPITHAVGNTIKRVVIILASVVVFGTKMTPLNQI-GSSLAIFGVLLYSLAKQYCK 370
BLAST of mRNA_E-fasciculatus_F_contig11247.993.1 vs. uniprot
Match: A0A7S1RW02_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RW02_ALECA) HSP 1 Score: 62.4 bits (150), Expect = 9.360e-9 Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 595 VLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVTGSALAVIGVLGYSVAKARCK 822
V +G + L+ ++ F LG+L PV+HAV NT+KR+V+I F F + GV GS++A++G LGYS+AK + K
Sbjct: 39 VFSGFFYYLYNEVAFLALGRLDPVSHAVSNTMKRVVIIITAIFVFRTPVT-PLGVAGSSIAILGTLGYSLAKNKFK 113
BLAST of mRNA_E-fasciculatus_F_contig11247.993.1 vs. uniprot
Match: A0A7S0I580_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I580_9EUKA) HSP 1 Score: 66.2 bits (160), Expect = 1.010e-8 Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 595 VLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVTGSALAVIGVLGYSVAKAR 816
+LAG + L+ ++ F LG+++PVTHA+GNT+KR+V+I A AF + G+ GSA+A+ G L YS+AK++
Sbjct: 297 LLAGAFYYLYNEVAFLALGRVNPVTHAIGNTVKRVVIIIASVIAFKTPIS-TLGIIGSAIAIAGTLLYSLAKSK 369
BLAST of mRNA_E-fasciculatus_F_contig11247.993.1 vs. uniprot
Match: A0A836CHH7_9STRA (Plastidic triose-phosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH7_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.060e-8 Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 586 RRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVTGSALAVIGVLGYSVAK 810
+ A+L+G+ F L+ ++ F L +HPV HAVGNT+KR+ +IA+G FG + G+ GS+LA++GVL +S+ K
Sbjct: 306 KHALLSGLYFYLYNEVAFLALDAVHPVVHAVGNTLKRVFIIASGVILFGNKIT-PLGMVGSSLAIVGVLIFSLVK 379 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11247.993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11247.993.1 >prot_E-fasciculatus_F_contig11247.993.1 ID=prot_E-fasciculatus_F_contig11247.993.1|Name=mRNA_E-fasciculatus_F_contig11247.993.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=281bp MSALVSNLSNAMRNVLIVKNIGPAAAAGRRRTLKAEVSPPRSSGSSSLRPback to top mRNA from alignment at E-fasciculatus_F_contig11247:3630..4487- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11247.993.1 ID=mRNA_E-fasciculatus_F_contig11247.993.1|Name=mRNA_E-fasciculatus_F_contig11247.993.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=858bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11247:3630..4487- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11247:3630..4487- >mRNA_E-fasciculatus_F_contig11247.993.1 ID=mRNA_E-fasciculatus_F_contig11247.993.1|Name=mRNA_E-fasciculatus_F_contig11247.993.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1686bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11247:3630..4487- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |