mRNA_E-fasciculatus_F_contig11242.991.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11242.991.1
Unique NamemRNA_E-fasciculatus_F_contig11242.991.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11242.991.1 vs. uniprot
Match: A0A6H5KWL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.960e-20
Identity = 103/139 (74.10%), Postives = 105/139 (75.54%), Query Frame = 1 
Query:   28 RQSSSGSAAGLAGARTLGAYGDRADKETEEEGELEVKPRGATXXXXXXXXXXXXXXXXXXXXXXXXXX-FGSVRRAAAAALASMASMATGRSASGSVASRTSGEVSSTAGSAIGGGGGSKRRLSGEIDMPTGEPEAKKM 441
            RQ S+GS    +GA TLGAY DRADKETEEEGELEVKPRG TXXXXXXXXXXXXXXXXXXXXXXXXXX FGSVRRAAAAALASMASMATGRS S    SRTS                    LSGEIDMPTGEPEAKKM
Sbjct: 2035 RQPSTGSVTRSSGAGTLGAYVDRADKETEEEGELEVKPRGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXFGSVRRAAAAALASMASMATGRSVS--AGSRTSXXXXXXXXXXXXXXXXXXXXLSGEIDMPTGEPEAKKM 2171
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BLAST of mRNA_E-fasciculatus_F_contig11242.991.1 vs. uniprot
Match: D8LBV2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV2_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 5.620e-12
Identity = 45/52 (86.54%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:  289 TGRSASGSVASRTSGEVSSTAGSAIGGGGG-SKRRLSGEIDMPTGEPEAKKM 441
            TGRS SGS  SRTSGEVSSTAGSAIGG    SKRRLSGEIDMPTGEPEAKKM
Sbjct: 1300 TGRSVSGSAGSRTSGEVSSTAGSAIGGXXXXSKRRLSGEIDMPTGEPEAKKM 1351
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11242.991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWL3_9PHAE1.960e-2074.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBV2_ECTSI5.620e-1286.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11242contigE-fasciculatus_F_contig11242:3958..4398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size442
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927631.700359-CDS-E-fasciculatus_F_contig11242:3957..43981622927631.700359-CDS-E-fasciculatus_F_contig11242:3957..4398Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11242 3958..4398 +
1695995627.8012533-CDS-E-fasciculatus_F_contig11242:3957..43981695995627.8012533-CDS-E-fasciculatus_F_contig11242:3957..4398Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11242 3958..4398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11242.991.1prot_E-fasciculatus_F_contig11242.991.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11242 3958..4398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11242.991.1

>prot_E-fasciculatus_F_contig11242.991.1 ID=prot_E-fasciculatus_F_contig11242.991.1|Name=mRNA_E-fasciculatus_F_contig11242.991.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=147bp
QQQRRPSSRRQSSSGSAAGLAGARTLGAYGDRADKETEEEGELEVKPRGA
TMATATSTSTSSNDGDGKSSTTSGGGGFGSVRRAAAAALASMASMATGRS
ASGSVASRTSGEVSSTAGSAIGGGGGSKRRLSGEIDMPTGEPEAKKM
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mRNA from alignment at E-fasciculatus_F_contig11242:3958..4398+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11242.991.1 ID=mRNA_E-fasciculatus_F_contig11242.991.1|Name=mRNA_E-fasciculatus_F_contig11242.991.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=441bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11242:3958..4398+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAACAACGCCGCCCGTCGTCGCGCAGGCAGTCCTCGTCGGGATCGGC
GGCGGGGTTGGCCGGGGCGAGAACCCTCGGTGCCTACGGTGACAGGGCCG
ACAAGGAGACGGAGGAGGAAGGCGAGCTCGAGGTGAAGCCTCGGGGGGCC
ACGATGGCGACGGCGACGTCGACTTCGACGTCGTCGAACGACGGGGACGG
GAAGAGCAGCACCACCAGCGGCGGCGGCGGGTTCGGGAGCGTCCGCCGCG
CCGCGGCGGCCGCGCTCGCCTCGATGGCCAGCATGGCCACGGGCAGGAGC
GCGAGCGGAAGCGTAGCCAGCAGGACCAGCGGGGAAGTGTCGTCGACGGC
AGGCAGCGCCATCGGCGGCGGCGGCGGCTCGAAGAGGCGGCTGTCCGGCG
AGATCGACATGCCGACCGGCGAGCCCGAGGCCAAGAAGATG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11242:3958..4398+

>mRNA_E-fasciculatus_F_contig11242.991.1 ID=mRNA_E-fasciculatus_F_contig11242.991.1|Name=mRNA_E-fasciculatus_F_contig11242.991.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=882bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11242:3958..4398+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAACAACGCCGCCCGTCGTCGCGCAGGCAGTCCTCGTCGGGATCGGC
GGCGGGGTTGGCCGGGGCGAGAACCCTCGGTGCCTACGGTGACAGGGCCG
ACAAGGAGACGGAGGAGGAAGGCGAGCTCGAGGTGAAGCCTCGGGGGGCC
ACGATGGCGACGGCGACGTCGACTTCGACGTCGTCGAACGACGGGGACGG
GAAGAGCAGCACCACCAGCGGCGGCGGCGGGTTCGGGAGCGTCCGCCGCG
CCGCGGCGGCCGCGCTCGCCTCGATGGCCAGCATGGCCACGGGCAGGAGC
GCGAGCGGAAGCGTAGCCAGCAGGACCAGCGGGGAAGTGTCGTCGACGGC
AGGCAGCGCCATCGGCGGCGGCGGCGGCTCGAAGAGGCGGCTGTCCGGCG
AGATCGACATGCCGACCGGCGAGCCCGAGGCCAAGAAGATGCAGCAACAA
CGCCGCCCGTCGTCGCGCAGGCAGTCCTCGTCGGGATCGGCGGCGGGGTT
GGCCGGGGCGAGAACCCTCGGTGCCTACGGTGACAGGGCCGACAAGGAGA
CGGAGGAGGAAGGCGAGCTCGAGGTGAAGCCTCGGGGGGCCACGATGGCG
ACGGCGACGTCGACTTCGACGTCGTCGAACGACGGGGACGGGAAGAGCAG
CACCACCAGCGGCGGCGGCGGGTTCGGGAGCGTCCGCCGCGCCGCGGCGG
CCGCGCTCGCCTCGATGGCCAGCATGGCCACGGGCAGGAGCGCGAGCGGA
AGCGTAGCCAGCAGGACCAGCGGGGAAGTGTCGTCGACGGCAGGCAGCGC
CATCGGCGGCGGCGGCGGCTCGAAGAGGCGGCTGTCCGGCGAGATCGACA
TGCCGACCGGCGAGCCCGAGGCCAAGAAGATG
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