mRNA_E-fasciculatus_F_contig11242.990.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11242.990.1
Unique NamemRNA_E-fasciculatus_F_contig11242.990.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11242.990.1 vs. uniprot
Match: A0A6H5KWL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL3_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 3.830e-66
Identity = 149/161 (92.55%), Postives = 150/161 (93.17%), Query Frame = -1 
Query:   52 GGESMISDAMSEAGGASRHTAGAAPA---AGLGSDGGDSSVDFSSSAPVELKTPSSATGDAAAAGAGDRPVPSASLAVTPSSVGLQRLQXXXXXX--HKRTGSEGSIQSLTLQGPSVWDLGGGGG-DADVEDVSMQDTYSPPSSPGAISTRTASTMASAVS 516
            GGESMIS+AMSEAGGASRHTAGAA     AGLGSDGGDSSVDFSSSAPVELKTPSSATG AAAAG GDRPVPSASLAVTPSSVGLQRLQXXXXXX  HKRTGSEGSIQSL LQGPSVWDLGGGGG DADVEDVSMQDTYSPPSSPGAISTRTASTMASAVS
Sbjct: 1520 GGESMISEAMSEAGGASRHTAGAAAVXXXAGLGSDGGDSSVDFSSSAPVELKTPSSATGYAAAAGDGDRPVPSASLAVTPSSVGLQRLQXXXXXXXXHKRTGSEGSIQSLILQGPSVWDLGGGGGGDADVEDVSMQDTYSPPSSPGAISTRTASTMASAVS 1680
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11242.990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWL3_9PHAE3.830e-6692.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11242contigE-fasciculatus_F_contig11242:1959..2838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size843
Cds size621
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11242.990.1prot_E-fasciculatus_F_contig11242.990.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11242 2181..2838 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927631.63204-UTR-E-fasciculatus_F_contig11242:1958..21801622927631.63204-UTR-E-fasciculatus_F_contig11242:1958..2180Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11242 1959..2180 -
1695995627.773912-UTR-E-fasciculatus_F_contig11242:1958..21801695995627.773912-UTR-E-fasciculatus_F_contig11242:1958..2180Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11242 1959..2180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927631.6441867-CDS-E-fasciculatus_F_contig11242:2180..22851622927631.6441867-CDS-E-fasciculatus_F_contig11242:2180..2285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11242 2181..2285 -
1695995627.7819917-CDS-E-fasciculatus_F_contig11242:2180..22851695995627.7819917-CDS-E-fasciculatus_F_contig11242:2180..2285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11242 2181..2285 -
1622927631.6567934-CDS-E-fasciculatus_F_contig11242:2322..28381622927631.6567934-CDS-E-fasciculatus_F_contig11242:2322..2838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11242 2323..2838 -
1695995627.7925353-CDS-E-fasciculatus_F_contig11242:2322..28381695995627.7925353-CDS-E-fasciculatus_F_contig11242:2322..2838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11242 2323..2838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11242.990.1

>prot_E-fasciculatus_F_contig11242.990.1 ID=prot_E-fasciculatus_F_contig11242.990.1|Name=mRNA_E-fasciculatus_F_contig11242.990.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=207bp
RGRRGHGRRRGRAGPAPADRAGHGAGRARGDGAGGGRRGVRVLHRNVFDV
RITAAAPEIPHRGALEGQALDAPLAAGALVLLLLLLLKPLKSHRRRGHRE
RSRRHRPIAGAGGRGISRRRRRCLELDRRRGREVDGGIAPVGAQARRRRR
AGGVPGSPAGLRHRIGYHALSASLRLLPLEPRAAPVLSAAAPSSGEEPRE
PLMRGE*
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mRNA from alignment at E-fasciculatus_F_contig11242:1959..2838-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11242.990.1 ID=mRNA_E-fasciculatus_F_contig11242.990.1|Name=mRNA_E-fasciculatus_F_contig11242.990.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=880bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11242:1959..2838- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAGGACGCCGCGGACATGGACGCCGACGAGGACGAGCTGGCCCCGCCCC
CGCTGACCGCGCTGGCCATGGTGCTGGCCGTGCGCGTGGAGATGGCGCCG
GGGGAGGACGGCGGGGAGTACGTGTCCTGCATCGAAACGTCTTCGACGTC
CGCATCACCGCCGCCGCCCCCGAGATCCCACACAGAGGGGCCCTGGAGGG
TCAGGCTCTGGATGCTCCCCTCGCTGCCGGTGCGCTTGTGCTGCTGCTGC
TGCTGCTGCTGAAGCCGCTGAAGTCCCACCGAAGACGGGGTCACCGCGAG
CGAAGCCGAAGGCACCGGCCGATCGCCGGCGCCGGCGGCCGCGGCATCTC
CCGTCGCCGAAGAAGGTGTCTTGAGCTCGACAGGCGCCGAGGAAGAGAAG
TCGACGGAGGAATCGCCCCCGTCGGAGCCCAAGCCCGCCGCCGGCGCCGC
GCCGGCGGTGTGCCGGGAAGCCCCGCCGGCCTCCGACATCGCATCGGATA
TCATGCTCTCTCCGCCGCCCAGGACGAGGCGGCGCGGAGCGGGAGCCGAC
GAGTCGCTGCGGCTGCTGCCGCTCGAACCTCGGGCGGCTCCGGTGTTGTC
TGCTGCCGCTCCGTCTTCCGGCGAGGAGCCCAGGGAGCCGCTCATGAGGG
GGGAGTAGGCCGGGGGCGGCGAGTCCGACGGCTCGCGGACTGGCGAGTAC
GCCGGGGCGTTGACCACCGCCACGACGACCGGCGGCAGGCCGGCGGCGGC
GGCCACGCTCGCGGGAGAAGAGAGGGTGGACGAGGACGGGCTGTCCTTCG
ACTCGGCCACGTCCATGTCGCTGCTCTCCCCCTCCGCTGCCTGCTGCCGC
TGCCGTGTCGGCGTCGTCGTGTCCGCCGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11242:1959..2838-

>mRNA_E-fasciculatus_F_contig11242.990.1 ID=mRNA_E-fasciculatus_F_contig11242.990.1|Name=mRNA_E-fasciculatus_F_contig11242.990.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1242bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11242:1959..2838- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAGGACGCCGCGGACATGGACGCCGACGAGGACGAGCTGGCCCCGCCCC
CGCTGACCGCGCTGGCCATGGTGCTGGCCGTGCGCGTGGAGATGGCGCCG
GGGGAGGACGGCGGGGAGTACGTGTCCTGCATCGAAACGTCTTCGACGTC
CGCATCACCGCCGCCGCCCCCGAGATCCCACACAGAGGGGCCCTGGAGGG
TCAGGCTCTGGATGCTCCCCTCGCTGCCGGTGCGCTTGTGCTGCTGCTGC
TGCTGCTGCTGAAGCCGCTGAAGTCCCACCGAAGACGGGGTCACCGCGAG
CGAAGCCGAAGGCACCGGCCGATCGCCGGCGCCGGCGGCCGCGGCATCTC
CCGTCGCCGAAGAAGGTGTCTTGAGCTCGACAGGCGCCGAGGAAGAGAAG
TCGACGGAGGAATCGCCCCCGTCGGAGCCCAAGCCCGCCGCCGGCGCCGC
GCCGGCGGTGTGCCGGGAAGCCCCGCCGGCCTCCGACATCGCATCGGATA
TCATGCTCTCTCCGCCCGAGGACGCCGCGGACATGGACGCCGACGAGGAC
GAGCTGGCCCCGCCCCCGCTGACCGCGCTGGCCATGGTGCTGGCCGTGCG
CGTGGAGATGGCGCCGGGGGAGGACGGCGGGGAGTACGTGTCCTGCATCG
AAACGTCTTCGACGTCCGCATCACCGCCGCCGCCCCCGAGATCCCACACA
GAGGGGCCCTGGAGGGTCAGGCTCTGGATGCTCCCCTCGCTGCCGGTGCG
CTTGTGCTGCTGCTGCTGCTGCTGCTGAAGCCGCTGAAGTCCCACCGAAG
ACGGGGTCACCGCGAGCGAAGCCGAAGGCACCGGCCGATCGCCGGCGCCG
GCGGCCGCGGCATCTCCCGTCGCCGAAGAAGGTGTCTTGAGCTCGACAGG
CGCCGAGGAAGAGAAGTCGACGGAGGAATCGCCCCCGTCGGAGCCCAAGC
CCGCCGCCGGCGCCGCGCCGGCGGTGTGCCGGGAAGCCCCGCCGGCCTCC
GACATCGCATCGGATATCATGCTCTCTCCGCCTCGCTGCGGCTGCTGCCG
CTCGAACCTCGGGCGGCTCCGGTGTTGTCTGCTGCCGCTCCGTCTTCCGG
CGAGGAGCCCAGGGAGCCGCTCATGAGGGGGGAGTAGTCGCTGCGGCTGC
TGCCGCTCGAACCTCGGGCGGCTCCGGTGTTGTCTGCTGCCGCTCCGTCT
TCCGGCGAGGAGCCCAGGGAGCCGCTCATGAGGGGGGAGTAG
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