mRNA_E-fasciculatus_F_contig11225.979.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI) HSP 1 Score: 172 bits (436), Expect = 7.360e-48 Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 1
Query: 1 GRFSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEED-GLTDDQKDLISWMDSKDL------QVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
G+FSLPKVAVLAEQ +RHLPTMTVHETLKFAFDSMAGGTHAEGL EED GLTDDQKDLISWMDSKDL +VEMVMRHLGLLNAKDTIVGDNSLRGVSGG
Sbjct: 145 GKFSLPKVAVLAEQADRHLPTMTVHETLKFAFDSMAGGTHAEGLVEEDDGLTDDQKDLISWMDSKDLKYFGLVEVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 247
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI) HSP 1 Score: 141 bits (355), Expect = 6.170e-37 Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 1
Query: 1 GRFSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
G+FSLPKVA AEQ +RHLPTMTV ET KFAFDSM+GGTH + EE GL DDQKDLISWMDS +VEM+ R+LGL NAKDTIVGDNS+RGVSGG
Sbjct: 241 GKFSLPKVAHFAEQADRHLPTMTVLETFKFAFDSMSGGTHGSLVAEE-GLNDDQKDLISWMDSMRFKVEMITRNLGLFNAKDTIVGDNSVRGVSGG 335
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: D7FQM9_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM9_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.230e-30 Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = 1
Query: 1 GRFSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
G FSLPKVA AEQ +RH+PTMTV+ET FAF+SMAG +H E T++QK L +WMD + +VEMV+R+LGL NAKDTIVG+NS+RGVSGG
Sbjct: 156 GNFSLPKVAHFAEQADRHIPTMTVNETFTFAFNSMAGASHGLNFPEGSTATEEQKSLFAWMDENNFKVEMVLRNLGLYNAKDTIVGNNSVRGVSGG 251
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: A0A835Z0F1_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F1_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.380e-20 Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 7 FSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
FSLPKVA +QT+RH+ +TV ET+ FAFD M GGTH L + + T +Q +L+ +MD + +V +M LGL NAKDTIVGD RG+SGG
Sbjct: 175 FSLPKVAAYVQQTDRHVAHLTVEETITFAFDCMEGGTHGAWLAKGE-RTQEQHELLKYMDERKRKVRAIMTILGLNNAKDTIVGDVFTRGISGG 267
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: A0A7S3MBZ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBZ1_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.130e-10 Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = 1
Query: 1 GRFSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
G++ + KVA ++ E H T+TV ET++FA+D GG H+ G+ +D T +++ D+ +++ +++ LGL +T+VG+ S+RGVSGG
Sbjct: 27 GKYLMGKVASYTDEKELHAGTLTVRETMEFAWDMTTGGHHSYGIA-QDAKT---AEILDRDDAHKVKMHNMIKTLGLAECANTLVGNASIRGVSGG 118
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: A0A7S2SP80_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SP80_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 8.240e-10 Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 1
Query: 19 KVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
K++ EQ+ HLP +TV ETL+FAF GG + + T DQK+ + M + E +M H GLL D VGD +RGVSGG
Sbjct: 86 KLSSYIEQSNTHLPNLTVRETLEFAFKCFGGGKVTQVFSDAPHSTFDQKEEL--MTAMKHYPEFIMEHFGLLGCADVPVGDELIRGVSGG 173
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: A0A7S1TP17_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP17_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 8.770e-10 Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 1
Query: 4 RFSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
RF L K +Q H+PT+TV ET +FAF ++ +G G+T +++++ + ++ V+ ++ LGL + +DTIVGD+ LRGVSGG
Sbjct: 260 RFFLNKTVAYIDQEAHHIPTLTVRETFEFAFQAL--------IGANAGVTQPRREVVKEIGTR---VDNIINFLGLQSCEDTIVGDDLLRGVSGG 343
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: A0A2P4XJY4_9STRA (Pleiotropic drug resistance protein ABC Superfamily (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJY4_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 2.180e-9 Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 1
Query: 13 LPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQV---EMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
LP+ Q ++H PT+TV ETL+FA G +G G D T + D+ + +K++ E+V++ LGL +DT+VGDN LRGVSGG
Sbjct: 154 LPQFVSYVNQRDKHFPTLTVKETLEFAHTFCGGKLLEQGKGMLDMGTTNHNDVEALEATKNIFAHYPEIVIQQLGLQICQDTVVGDNMLRGVSGG 248
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: G5A614_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G5A614_PHYSP) HSP 1 Score: 62.8 bits (151), Expect = 2.230e-9 Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 1
Query: 13 LPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQV---EMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
LP+ EQ E+H PT+TV ETL+FA G +G G D DL + +K + ++V++ LGL +DTIVGDN LRG+SGG
Sbjct: 161 LPQFVSYVEQREKHFPTLTVKETLEFAHTFCGGKLLEQGKGMLDMGAQHTSDLEALEATKKIFAHYPDVVLQQLGLQICQDTIVGDNMLRGISGG 255
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: A0A225UZT9_9STRA (Pleiotropic drug resistance protein transporter (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UZT9_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 7.580e-9 Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1
Query: 7 FSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
L K+A L +QT+ H+PT+TV ET KFA + +G +DQ+D D L+ E+ ++ LGL N DT+VGD LRGVSGG
Sbjct: 183 IDLIKLAGLVDQTDNHIPTLTVRETFKFADMCV------------NGRPEDQRD--EMRDIAALRTELFLQILGLENCADTVVGDALLRGVSGG 262 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11225.979.1 >prot_E-fasciculatus_F_contig11225.979.1 ID=prot_E-fasciculatus_F_contig11225.979.1|Name=mRNA_E-fasciculatus_F_contig11225.979.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=96bp GRFSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLback to top mRNA from alignment at E-fasciculatus_F_contig11225:948..2118- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11225.979.1 ID=mRNA_E-fasciculatus_F_contig11225.979.1|Name=mRNA_E-fasciculatus_F_contig11225.979.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1171bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11225:948..2118- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11225:948..2118- >mRNA_E-fasciculatus_F_contig11225.979.1 ID=mRNA_E-fasciculatus_F_contig11225.979.1|Name=mRNA_E-fasciculatus_F_contig11225.979.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11225:948..2118- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |