mRNA_E-fasciculatus_F_contig11225.979.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11225.979.1
Unique NamemRNA_E-fasciculatus_F_contig11225.979.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 7.360e-48
Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 1
Query:    1 GRFSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEED-GLTDDQKDLISWMDSKDL------QVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
            G+FSLPKVAVLAEQ +RHLPTMTVHETLKFAFDSMAGGTHAEGL EED GLTDDQKDLISWMDSKDL      +VEMVMRHLGLLNAKDTIVGDNSLRGVSGG
Sbjct:  145 GKFSLPKVAVLAEQADRHLPTMTVHETLKFAFDSMAGGTHAEGLVEEDDGLTDDQKDLISWMDSKDLKYFGLVEVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 247          
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 6.170e-37
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 1
Query:    1 GRFSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
            G+FSLPKVA  AEQ +RHLPTMTV ET KFAFDSM+GGTH   + EE GL DDQKDLISWMDS   +VEM+ R+LGL NAKDTIVGDNS+RGVSGG
Sbjct:  241 GKFSLPKVAHFAEQADRHLPTMTVLETFKFAFDSMSGGTHGSLVAEE-GLNDDQKDLISWMDSMRFKVEMITRNLGLFNAKDTIVGDNSVRGVSGG 335          
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: D7FQM9_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM9_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.230e-30
Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    1 GRFSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
            G FSLPKVA  AEQ +RH+PTMTV+ET  FAF+SMAG +H     E    T++QK L +WMD  + +VEMV+R+LGL NAKDTIVG+NS+RGVSGG
Sbjct:  156 GNFSLPKVAHFAEQADRHIPTMTVNETFTFAFNSMAGASHGLNFPEGSTATEEQKSLFAWMDENNFKVEMVLRNLGLYNAKDTIVGNNSVRGVSGG 251          
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: A0A835Z0F1_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.380e-20
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    7 FSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
            FSLPKVA   +QT+RH+  +TV ET+ FAFD M GGTH   L + +  T +Q +L+ +MD +  +V  +M  LGL NAKDTIVGD   RG+SGG
Sbjct:  175 FSLPKVAAYVQQTDRHVAHLTVEETITFAFDCMEGGTHGAWLAKGE-RTQEQHELLKYMDERKRKVRAIMTILGLNNAKDTIVGDVFTRGISGG 267          
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: A0A7S3MBZ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBZ1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.130e-10
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    1 GRFSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
            G++ + KVA   ++ E H  T+TV ET++FA+D   GG H+ G+  +D  T    +++   D+  +++  +++ LGL    +T+VG+ S+RGVSGG
Sbjct:   27 GKYLMGKVASYTDEKELHAGTLTVRETMEFAWDMTTGGHHSYGIA-QDAKT---AEILDRDDAHKVKMHNMIKTLGLAECANTLVGNASIRGVSGG 118          
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: A0A7S2SP80_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SP80_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 8.240e-10
Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   19 KVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
            K++   EQ+  HLP +TV ETL+FAF    GG   +   +    T DQK+ +  M +     E +M H GLL   D  VGD  +RGVSGG
Sbjct:   86 KLSSYIEQSNTHLPNLTVRETLEFAFKCFGGGKVTQVFSDAPHSTFDQKEEL--MTAMKHYPEFIMEHFGLLGCADVPVGDELIRGVSGG 173          
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: A0A7S1TP17_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP17_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 8.770e-10
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    4 RFSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
            RF L K     +Q   H+PT+TV ET +FAF ++        +G   G+T  +++++  + ++   V+ ++  LGL + +DTIVGD+ LRGVSGG
Sbjct:  260 RFFLNKTVAYIDQEAHHIPTLTVRETFEFAFQAL--------IGANAGVTQPRREVVKEIGTR---VDNIINFLGLQSCEDTIVGDDLLRGVSGG 343          
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: A0A2P4XJY4_9STRA (Pleiotropic drug resistance protein ABC Superfamily (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJY4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.180e-9
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   13 LPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQV---EMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
            LP+      Q ++H PT+TV ETL+FA     G    +G G  D  T +  D+ +   +K++     E+V++ LGL   +DT+VGDN LRGVSGG
Sbjct:  154 LPQFVSYVNQRDKHFPTLTVKETLEFAHTFCGGKLLEQGKGMLDMGTTNHNDVEALEATKNIFAHYPEIVIQQLGLQICQDTVVGDNMLRGVSGG 248          
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: G5A614_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G5A614_PHYSP)

HSP 1 Score: 62.8 bits (151), Expect = 2.230e-9
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 1
Query:   13 LPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQV---EMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
            LP+     EQ E+H PT+TV ETL+FA     G    +G G  D       DL +   +K +     ++V++ LGL   +DTIVGDN LRG+SGG
Sbjct:  161 LPQFVSYVEQREKHFPTLTVKETLEFAHTFCGGKLLEQGKGMLDMGAQHTSDLEALEATKKIFAHYPDVVLQQLGLQICQDTIVGDNMLRGISGG 255          
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Match: A0A225UZT9_9STRA (Pleiotropic drug resistance protein transporter (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UZT9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.580e-9
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    7 FSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGLTDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG 288
              L K+A L +QT+ H+PT+TV ET KFA   +            +G  +DQ+D     D   L+ E+ ++ LGL N  DT+VGD  LRGVSGG
Sbjct:  183 IDLIKLAGLVDQTDNHIPTLTVRETFKFADMCV------------NGRPEDQRD--EMRDIAALRTELFLQILGLENCADTVVGDALLRGVSGG 262          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11225.979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFP2_ECTSI7.360e-4888.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFN4_ECTSI6.170e-3775.00Pleiotropic drug resistance transporter n=1 Tax=Ec... [more]
D7FQM9_ECTSI1.230e-3062.50ABC transporter domain-containing protein n=1 Tax=... [more]
A0A835Z0F1_9STRA3.380e-2052.13ABC-2 type transporter-domain-containing protein n... [more]
A0A7S3MBZ1_9STRA1.130e-1035.42Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2SP80_9STRA8.240e-1041.11Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A7S1TP17_9STRA8.770e-1036.84Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2P4XJY4_9STRA2.180e-940.00Pleiotropic drug resistance protein ABC Superfamil... [more]
G5A614_PHYSP2.230e-941.05Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A225UZT9_9STRA7.580e-941.49Pleiotropic drug resistance protein transporter (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11225contigE-fasciculatus_F_contig11225:948..2118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue1.6e-40
Seed eggNOG ortholog2880.D8LFP2
EggNOG free text desc.ATPase activity
EggNOG OGsCOG1131@1,KOG0065@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size290
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11225.979.1prot_E-fasciculatus_F_contig11225.979.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11225 948..2118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927630.8243198-CDS-E-fasciculatus_F_contig11225:947..10341622927630.8243198-CDS-E-fasciculatus_F_contig11225:947..1034Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11225 948..1034 -
1695995627.2761314-CDS-E-fasciculatus_F_contig11225:947..10341695995627.2761314-CDS-E-fasciculatus_F_contig11225:947..1034Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11225 948..1034 -
1622927630.8376093-CDS-E-fasciculatus_F_contig11225:1296..14551622927630.8376093-CDS-E-fasciculatus_F_contig11225:1296..1455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11225 1297..1455 -
1695995627.287371-CDS-E-fasciculatus_F_contig11225:1296..14551695995627.287371-CDS-E-fasciculatus_F_contig11225:1296..1455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11225 1297..1455 -
1622927630.851182-CDS-E-fasciculatus_F_contig11225:2076..21181622927630.851182-CDS-E-fasciculatus_F_contig11225:2076..2118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11225 2077..2118 -
1695995627.2965698-CDS-E-fasciculatus_F_contig11225:2076..21181695995627.2965698-CDS-E-fasciculatus_F_contig11225:2076..2118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11225 2077..2118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11225.979.1

>prot_E-fasciculatus_F_contig11225.979.1 ID=prot_E-fasciculatus_F_contig11225.979.1|Name=mRNA_E-fasciculatus_F_contig11225.979.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=96bp
GRFSLPKVAVLAEQTERHLPTMTVHETLKFAFDSMAGGTHAEGLGEEDGL
TDDQKDLISWMDSKDLQVEMVMRHLGLLNAKDTIVGDNSLRGVSGG
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mRNA from alignment at E-fasciculatus_F_contig11225:948..2118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11225.979.1 ID=mRNA_E-fasciculatus_F_contig11225.979.1|Name=mRNA_E-fasciculatus_F_contig11225.979.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1171bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11225:948..2118- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGACGGTTTTCTCTGCCCAAGGTGGCGGTTTTGGCGGAACAGGTCAGGCA GGCTAGGACGACTCGACTTGTAGAACGGCAATGCCCTTTGAAGTATGTCT GGAGTGTGCATGCGAAGAAGGATCATTTACCTCGCGTCACCACTCGTTGT CTCTATCAGCCAGATTTTAACACGTCTGACAACTCATGTGTCGGCAAACC AACGTCTGTCGGACTTCCGTTAGTTTTCGTTCGCGCTTGCCGAGCAGAAA GGTAGGCTGTGCACGCGTAGCATCTCCGTCAGGGTTCCACATTCTAAAGA CAACATTGCTCCTAGGACGGTACAAGGGACGTTCAAGTGTTGTCCCATCG ACCTACGGTAGAGCGTGTTTCATTGTTGTTCTACCTCGTTTCCGACAACC GTCTTTTCTCCAAGAGATCTTCGTAAAATACCATTCCGATCGGATGGATC CAAGTTTGGAACAAAGGCTAGGGCTTCAGGCCGGCGCAGGAGGGCCTCAC CCAAAGTCCAATAAGCATGAATCATCCTCGTTATGGAGAGAGGATACTAC AGTAAAACAAGCAGCCGCAACGGGTGTTTCTCCGCTTGCGAAGCCGCGGC CCGACGTGTATCTTGGTGTTTCCACGCTAATCATGCACGCCGACGCCCTA TGCTCTCGCCCAGACGGAGCGCCACCTTCCTACCATGACGGTCCACGAGA CCCTCAAGTTCGCCTTCGACTCCATGGCTGGCGGTACGCACGCGGAGGGC CTCGGGGAAGAGGACGGCCTGACCGACGACCAGAAGGACCTGATATCGTG GATGGACAGCAAGGACCTCCAGGTGTGCCGATAAGTTTACCAATCACGCA ATTGCTGGGTTTTGCCGTGCGTTCTGCAGTACGTTTGGGCCGGCGAAGAA GAGTCGTTGACGAACGAAAGTACCGCGTAACCGTTTCTGTTCTCTCGCGC TATCGGGCGGTGGGGGCAGACAACGTTCGATGGTATGTACTTACGAAGCA CAATCCTGTCTACTACTGCTAGCCCACAGATTATGTTTCTTTTGTCAACG TCGCGAACGGCGAATTTGTTGTATTCTCGACCAGGTGGAGATGGTGATGC GGCATCTGGGCCTACTGAACGCTAAGGACACGATCGTCGGCGACAACTCT CTCAGGGGCGTTAGCGGGGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11225:948..2118-

>mRNA_E-fasciculatus_F_contig11225.979.1 ID=mRNA_E-fasciculatus_F_contig11225.979.1|Name=mRNA_E-fasciculatus_F_contig11225.979.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11225:948..2118- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGACGGTTTTCTCTGCCCAAGGTGGCGGTTTTGGCGGAACAGGGACGGTT
TTCTCTGCCCAAGGTGGCGGTTTTGGCGGAACAGACGGAGCGCCACCTTC
CTACCATGACGGTCCACGAGACCCTCAAGTTCGCCTTCGACTCCATGGCT
GGCGGTACGCACGCGGAGGGCCTCGGGGAAGAGGACGGCCTGACCGACGA
CCAGAAGGACCTGATATCGTGGATGGACAGCAAGGACCTCCAGACGGAGC
GCCACCTTCCTACCATGACGGTCCACGAGACCCTCAAGTTCGCCTTCGAC
TCCATGGCTGGCGGTACGCACGCGGAGGGCCTCGGGGAAGAGGACGGCCT
GACCGACGACCAGAAGGACCTGATATCGTGGATGGACAGCAAGGACCTCC
AGGTGGAGATGGTGATGCGGCATCTGGGCCTACTGAACGCTAAGGACACG
ATCGTCGGCGACAACTCTCTCAGGGGCGTTAGCGGGGGCGTGGAGATGGT
GATGCGGCATCTGGGCCTACTGAACGCTAAGGACACGATCGTCGGCGACA
ACTCTCTCAGGGGCGTTAGCGGGGGC
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