mRNA_E-fasciculatus_F_contig11224.978.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11224.978.1
Unique NamemRNA_E-fasciculatus_F_contig11224.978.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11224.978.1 vs. uniprot
Match: A0A6H5L3Q6_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE)

HSP 1 Score: 444 bits (1143), Expect = 5.060e-144
Identity = 277/330 (83.94%), Postives = 286/330 (86.67%), Query Frame = 2 
Query:  221 MMSYLAVGDLLEDTITRSAQNQHGADDELSWLRRRLDSERRDPRARGKLALENGDCISSSSXXXXXXXSGSQLQARSVAKKAAPIDKENV---AVAKPAGSRANKASPTGMSVLQLRRFLRAIGQPTSGLKPVLSARLEKAVASGAVKTFVDSARAQPRAAVECAGERRKTDAMLAVAESMLNLSGSSSTSSAAGDTTAPKMPLRESLSSANNERSSRSSVGGDSVDKSQPLQQQVPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKLQQQPAPAAASTEAESLPTPVTPPSLRP 1201
            MM+YLAVGDLLEDTITRSAQNQ+GAD ELSWLRRRLDSERRDPRARGKLALEN D ISS  XXXXXXX   Q Q RSVAKKAAP+DKEN    AVAKPAGSRA+K  PTGMSVLQLRRFLR IGQPTSGLKPVLSARLEKAVASGAVKTFVD+ARAQPRAAVECAGERRKTDAMLAVAESMLNL GS++TSSAAGD T PK PLRESLSS                      QQQVPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAK+ QQQPAPAAAST+AESLPTPVTPPSLRP
Sbjct:    1 MMNYLAVGDLLEDTITRSAQNQNGADGELSWLRRRLDSERRDPRARGKLALENVDGISSGGXXXXXXXXXXQTQPRSVAKKAAPVDKENASAAAVAKPAGSRASKVPPTGMSVLQLRRFLRVIGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRKTDAMLAVAESMLNLDGSNTTSSAAGDATTPKRPLRESLSSXXXXXXXXXXXXXXXXXXXX-XQQQVPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKQ-QQQPAPAAASTKAESLPTPVTPPSLRP 328
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BLAST of mRNA_E-fasciculatus_F_contig11224.978.1 vs. uniprot
Match: D8LQB0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB0_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.430e-60
Identity = 128/157 (81.53%), Postives = 129/157 (82.17%), Query Frame = 2 
Query:  731 MLAVAESMLNLSGSSSTSSAAGDTTAPKMPLRESLSSANNERSSRSSVGGDSVDKSQPLQQQVPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKLQQQPAPAAASTEAESLPTPVTPPSLRP 1201
            MLAVAESMLN  GSS+TSSAAGD TAPK PLRESLSSANN                   QQ  PVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKK Q  PAPAAASTEAESLPTPVTPPSLRP
Sbjct:    1 MLAVAESMLNPDGSSTTSSAAGDATAPKRPLRESLSSANNXXXXXXXXXXXXXXXXXXQQQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLRP 157
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11224.978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3Q6_9PHAE5.060e-14483.94SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQB0_ECTSI1.430e-6081.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11224contigE-fasciculatus_F_contig11224:2043..4530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-26_005470.1
Exons4
Model size1201
Cds size981
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11224.978.1prot_E-fasciculatus_F_contig11224.978.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11224 2263..4530 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927630.7206-UTR-E-fasciculatus_F_contig11224:2042..22621622927630.7206-UTR-E-fasciculatus_F_contig11224:2042..2262Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11224 2043..2262 +
1695995627.2251086-UTR-E-fasciculatus_F_contig11224:2042..22621695995627.2251086-UTR-E-fasciculatus_F_contig11224:2042..2262Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11224 2043..2262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927630.7352073-CDS-E-fasciculatus_F_contig11224:2262..25681622927630.7352073-CDS-E-fasciculatus_F_contig11224:2262..2568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11224 2263..2568 +
1695995627.236146-CDS-E-fasciculatus_F_contig11224:2262..25681695995627.236146-CDS-E-fasciculatus_F_contig11224:2262..2568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11224 2263..2568 +
1622927630.7495315-CDS-E-fasciculatus_F_contig11224:3172..33501622927630.7495315-CDS-E-fasciculatus_F_contig11224:3172..3350Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11224 3173..3350 +
1695995627.2448032-CDS-E-fasciculatus_F_contig11224:3172..33501695995627.2448032-CDS-E-fasciculatus_F_contig11224:3172..3350Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11224 3173..3350 +
1622927630.7626898-CDS-E-fasciculatus_F_contig11224:3774..41541622927630.7626898-CDS-E-fasciculatus_F_contig11224:3774..4154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11224 3775..4154 +
1695995627.2533011-CDS-E-fasciculatus_F_contig11224:3774..41541695995627.2533011-CDS-E-fasciculatus_F_contig11224:3774..4154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11224 3775..4154 +
1622927630.7771358-CDS-E-fasciculatus_F_contig11224:4413..45301622927630.7771358-CDS-E-fasciculatus_F_contig11224:4413..4530Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11224 4414..4530 +
1695995627.2652035-CDS-E-fasciculatus_F_contig11224:4413..45301695995627.2652035-CDS-E-fasciculatus_F_contig11224:4413..4530Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11224 4414..4530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11224.978.1

>prot_E-fasciculatus_F_contig11224.978.1 ID=prot_E-fasciculatus_F_contig11224.978.1|Name=mRNA_E-fasciculatus_F_contig11224.978.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=327bp
MMSYLAVGDLLEDTITRSAQNQHGADDELSWLRRRLDSERRDPRARGKLA
LENGDCISSSSGGGSNSSSGSQLQARSVAKKAAPIDKENVAVAKPAGSRA
NKASPTGMSVLQLRRFLRAIGQPTSGLKPVLSARLEKAVASGAVKTFVDS
ARAQPRAAVECAGERRKTDAMLAVAESMLNLSGSSSTSSAAGDTTAPKMP
LRESLSSANNERSSRSSVGGDSVDKSQPLQQQVPVTPATSKLSGQEQDAV
VAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKL
QQQPAPAAASTEAESLPTPVTPPSLRP
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mRNA from alignment at E-fasciculatus_F_contig11224:2043..4530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11224.978.1 ID=mRNA_E-fasciculatus_F_contig11224.978.1|Name=mRNA_E-fasciculatus_F_contig11224.978.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2488bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11224:2043..4530+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGAACGAGAGAGCGGAAGAGAGACAAACGCATTTGGCAGCCAACATCGG
CCAATCACTGCTGTAAGCAGTACCGATTCTCGCGCGGGTTCCTTTAAGAG
AATCGGCCGCAGCCAGAAGGAAAAAGAAAATAAACCGTTTGTCGATTTTT
TGCCAAAGGAAAGGAGCGCGCGTTTCCAACGATAGTCTACGTATCATACC
CAGCAGGAGGCAGCACCAACATGATGAGTTACCTCGCCGTCGGAGATCTC
CTGGAGGACACCATCACGCGCAGCGCGCAGAACCAGCACGGCGCGGACGA
CGAGCTCAGCTGGCTGCGCAGGCGGCTCGACAGCGAACGGCGTGACCCCC
GCGCGCGAGGCAAACTCGCCCTCGAGAACGGCGACTGTATCAGCAGCAGC
AGCGGCGGCGGCAGCAACAGCAGCAGCGGGAGCCAGCTGCAGGCCCGCTC
GGTGGCGAAGAAGGCGGCGCCCATCGACAAGGAGAATGTTGCTGTGGCGA
AGCCCGCTGGGTCTCGCGCGAACAAGGTGCGGTTCGTGTTTGCTTGATCT
CTCAACTCGACGAGTCCGTGTGTTTTGGCGCAAAAAAAAAAAAAGGATAT
CTATCTGTACACCCGGAGATAGTTGGCGGTACGCCCCGATGTGAACGATC
GATCGCACGACTCATTGACCGTGCCTCACCTACAGCAGTAGCACAGTTAA
ACGGGGGGCGGACAGACTAAGAGTACTGCTGCGGATAGTATTCACCAGCA
GTATTCATAGTAGACCACGTACTTGCTGCCGGCTCCATTTCTCGGCGTAT
TTTTTTGGCGCGAATTTCCGGTTGGCCTGTGTGTAGAGAACTGCAACAGC
GAGTCTCTCCTAAGTTCCTCCCCCCGATCACGTGCCGAAAAGGGGGGCTT
CCTACGTTGCTACAATAGGCACGTCTACGGTCGAGTGCTCTTTGTCGCGT
TCGCAGCAGTACCAGCAGCACACAATTCTAGCCCTCAACAGCAAGATGCA
CACACTTGGGGCGAAAGACAGCCTCAAGGCAATTGTCACAGCAGTATGTA
GTGGAATCTGCGTCCCGTTGAACCACAATCATTTCGTGGACCATACTCAC
ATCGTCCCCTCTCCTACACTCCTTCGGCAGGCGTCTCCGACAGGCATGAG
CGTGCTGCAGCTACGGCGCTTCCTGCGGGCCATCGGGCAGCCCACGTCGG
GCCTGAAGCCGGTCCTCTCCGCCCGCCTTGAGAAGGCCGTGGCCTCGGGC
GCCGTGAAGACGTTCGTCGACAGCGCAAGGGCGCAGCCGCGCGCAGCGGT
TGAGTGCGGTGAGCGATGGCATGCATTTCCGTGTGTGCGCCTAGACTTGT
GTTTCGTGTATGTTGGTAGATAGCATCGATGGCGAACTTGGGTGCCCGGT
GGTAGCACGTCAAGTCTCCTTGTACAAGTCCTGCGGGACGCAGATATTGC
GTTCTTTTTGTCCGTCGCGTCCCGCGTCAAGGAAGAGGTGTGCATGCGTG
TGTGGCATGGCGAAAGGTGCTGCTGTTGCTGCTGTGCGCTATTAAAAAAC
ATGGCGAAACACTAGCTCCTGTTGCTGTGGAAAAACTGCAGGTTAGCTTC
CGACCGACCCTTGTTGCGTTCGTTGTTTTTGGAAGCACGCTTCGTGCAAA
GCCCAAACATTCTGAATGCACAACCTCCCCCTCCCAATGCATCTCTCGAC
GATACCTATACCGGGCCCGAACCTGCACCCAGCTGGCGAGCGTCGGAAGA
CCGACGCCATGCTGGCGGTGGCCGAGTCTATGCTCAACCTGAGCGGCAGC
AGCAGCACTTCTTCCGCTGCCGGCGACACGACGGCACCGAAGATGCCGCT
TCGCGAATCGCTCTCAAGCGCCAACAACGAGCGCAGCTCCCGGTCTTCGG
TCGGCGGCGACAGCGTCGACAAGTCGCAACCGCTTCAGCAGCAGGTGCCG
GTGACACCGGCGACCTCCAAGCTGTCGGGCCAGGAGCAGGATGCCGTTGT
TGCGAAGATTCGGTCTGCGGCGAAGAGGTCTGCGTCTCCGGAGAAGAAGC
TGCCGTACCAGGACGACGACACGCCCAACACCAAGGGCGCTCGCCTCAAG
AAGGAGATGGAGGTGTGGTTCGGTACAGCGCAAAAGGGTCAATTGATTGG
TGCTCGGGGTCTGAGGATCGATTGATTGGTACACTGCAAGCGGTTGAGCA
AATGTCCCAGAACTTGCGCAACTACGCATCATTGCAGAATCATCGTCAGG
CCAAGTTAGTAGGACAATGAAAATAAAATACCTCTCGCGTCGTGGTTTTA
ACAACAAGCGTTCACAATGGTGGTGTGATCCCGTGTCGTCACCCTCTCCT
CTACCCCTGCCCCCCCCTCAGGACCGCCTTGCCAGGCAGAAAGCGGCCAA
GAAGCTGCAGCAGCAGCCCGCCCCGGCCGCCGCTTCGACCGAGGCCGAGT
CGCTCCCGACGCCCGTCACCCCGCCATCGCTCCGCCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11224:2043..4530+

>mRNA_E-fasciculatus_F_contig11224.978.1 ID=mRNA_E-fasciculatus_F_contig11224.978.1|Name=mRNA_E-fasciculatus_F_contig11224.978.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1962bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11224:2043..4530+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGAGTTACCTCGCCGTCGGAGATCTCCTGGAGGACACCATCACGCG
CAGCGCGCAGAACCAGCACGGCGCGGACGACGAGCTCAGCTGGCTGCGCA
GGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCGCGAGGCAAACTCGCC
CTCGAGAACGGCGACTGTATCAGCAGCAGCAGCGGCGGCGGCAGCAACAG
CAGCAGCGGGAGCCAGCTGCAGGCCCGCTCGGTGGCGAAGAAGGCGGCGC
CCATCGACAAGGAGAATGTTGCTGTGGCGAAGCCCGCTGGGTCTCGCGCG
AACAAGATGATGAGTTACCTCGCCGTCGGAGATCTCCTGGAGGACACCAT
CACGCGCAGCGCGCAGAACCAGCACGGCGCGGACGACGAGCTCAGCTGGC
TGCGCAGGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCGCGAGGCAAA
CTCGCCCTCGAGAACGGCGACTGTATCAGCAGCAGCAGCGGCGGCGGCAG
CAACAGCAGCAGCGGGAGCCAGCTGCAGGCCCGCTCGGTGGCGAAGAAGG
CGGCGCCCATCGACAAGGAGAATGTTGCTGTGGCGAAGCCCGCTGGGTCT
CGCGCGAACAAGGCGTCTCCGACAGGCATGAGCGTGCTGCAGCTACGGCG
CTTCCTGCGGGCCATCGGGCAGCCCACGTCGGGCCTGAAGCCGGTCCTCT
CCGCCCGCCTTGAGAAGGCCGTGGCCTCGGGCGCCGTGAAGACGTTCGTC
GACAGCGCAAGGGCGCAGCCGCGCGCAGCGGTTGAGTGCGGCGTCTCCGA
CAGGCATGAGCGTGCTGCAGCTACGGCGCTTCCTGCGGGCCATCGGGCAG
CCCACGTCGGGCCTGAAGCCGGTCCTCTCCGCCCGCCTTGAGAAGGCCGT
GGCCTCGGGCGCCGTGAAGACGTTCGTCGACAGCGCAAGGGCGCAGCCGC
GCGCAGCGGTTGAGTGCGCTGGCGAGCGTCGGAAGACCGACGCCATGCTG
GCGGTGGCCGAGTCTATGCTCAACCTGAGCGGCAGCAGCAGCACTTCTTC
CGCTGCCGGCGACACGACGGCACCGAAGATGCCGCTTCGCGAATCGCTCT
CAAGCGCCAACAACGAGCGCAGCTCCCGGTCTTCGGTCGGCGGCGACAGC
GTCGACAAGTCGCAACCGCTTCAGCAGCAGGTGCCGGTGACACCGGCGAC
CTCCAAGCTGTCGGGCCAGGAGCAGGATGCCGTTGTTGCGAAGATTCGGT
CTGCGGCGAAGAGGTCTGCGTCTCCGGAGAAGAAGCTGCCGTACCAGGAC
GACGACACGCCCAACACCAAGGGCGCTCGCCTCAAGAAGGAGATGGAGCT
GGCGAGCGTCGGAAGACCGACGCCATGCTGGCGGTGGCCGAGTCTATGCT
CAACCTGAGCGGCAGCAGCAGCACTTCTTCCGCTGCCGGCGACACGACGG
CACCGAAGATGCCGCTTCGCGAATCGCTCTCAAGCGCCAACAACGAGCGC
AGCTCCCGGTCTTCGGTCGGCGGCGACAGCGTCGACAAGTCGCAACCGCT
TCAGCAGCAGGTGCCGGTGACACCGGCGACCTCCAAGCTGTCGGGCCAGG
AGCAGGATGCCGTTGTTGCGAAGATTCGGTCTGCGGCGAAGAGGTCTGCG
TCTCCGGAGAAGAAGCTGCCGTACCAGGACGACGACACGCCCAACACCAA
GGGCGCTCGCCTCAAGAAGGAGATGGAGGACCGCCTTGCCAGGCAGAAAG
CGGCCAAGAAGCTGCAGCAGCAGCCCGCCCCGGCCGCCGCTTCGACCGAG
GCCGAGTCGCTCCCGACGCCCGTCACCCCGCCATCGCTCCGCCCCGACCG
CCTTGCCAGGCAGAAAGCGGCCAAGAAGCTGCAGCAGCAGCCCGCCCCGG
CCGCCGCTTCGACCGAGGCCGAGTCGCTCCCGACGCCCGTCACCCCGCCA
TCGCTCCGCCCC
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