mRNA_E-fasciculatus_F_contig1121.966.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig1121.966.1
Unique Name	mRNA_E-fasciculatus_F_contig1121.966.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig1121.966.1 vs. uniprot
Match: D7FJK8_ECTSI (rRNA biogenesis protein RRP36 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK8_ECTSI)

HSP 1 Score: 500 bits (1287), Expect = 4.250e-174
Identity = 283/293 (96.59%), Postives = 288/293 (98.29%), Query Frame = 2

Query:   41 MRKRAEMQPSDDEVSGQSSGEEASDNDSWDDEDLDENEAATEEQPNKEQGESIGERLIKLSHGAGPSRRKRHIRDSSGGEQKQASAAKTARDRARSGIAAHQQARGGDSGSGRNKVPSRANKNRPQEASSRRAVGRFREVVVTKRKKSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQTLLTRLQQERAERSQGDRTRMAIREAKKKEREAIASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKRQK 919
            MRKRAEMQPSDDEV+GQSSGEEASDNDSWDDEDLDENEAATEEQPNKEQGESIGERLIKLSHGAGPSRRKRHIRDS+GGEQKQA+AAKTARDR RSGIAAHQQARGG+SGSGR KVPSRANKNRPQEASSRRAVGRFREVVVTKRK SRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQ LLTRLQQERAERSQGDRTR AIREAKKKEREA+ASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKRQK
Sbjct:    1 MRKRAEMQPSDDEVNGQSSGEEASDNDSWDDEDLDENEAATEEQPNKEQGESIGERLIKLSHGAGPSRRKRHIRDSTGGEQKQANAAKTARDRTRSGIAAHQQARGGNSGSGRTKVPSRANKNRPQEASSRRAVGRFREVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQALLTRLQQERAERSQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKRQK 293

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BLAST of mRNA_E-fasciculatus_F_contig1121.966.1 vs. uniprot
Match: A0A835YP85_9STRA (rRNA biogenesis protein RRP36 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP85_9STRA)

HSP 1 Score: 174 bits (440), Expect = 4.840e-46
Identity = 99/195 (50.77%), Postives = 136/195 (69.74%), Query Frame = 2

Query:  386 VPSRANKNRPQEASSRRAVGRFREVVVTKRKKSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQ------ERSGRLQTLLTRLQQERAERSQGDRTRMAIREAKKKEREAIASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKRQK*SPVWATQGHP 952
            +P RANKN+P E SS+RAVGR REVV  +R+++RDPRF+   G+  LNYD+FRK+Y FL  YQD EI+ L+K   K K +      ER+   + LLT++QQERAER + D TR A+ + +K E EA+A GK P+F+K  +++ L+LE RYE L+ +GK+ KF++KKRK+NAAKD RW+P+KRQ         G P
Sbjct:  174 IPKRANKNQPMEMSSKRAVGRHREVVEVRRRRARDPRFDAATGT--LNYDMFRKSYEFLEGYQDGEIDALRKEAAKAKKRRGDGSAERAAAAKALLTKMQQERAERKRADATRAALSQRRKAEAEAVAKGKAPYFMKARDRRALALETRYEELRREGKVQKFVQKKRKRNAAKDRRWMPAKRQNTGXXXXXXGGP 366

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BLAST of mRNA_E-fasciculatus_F_contig1121.966.1 vs. uniprot
Match: T0S1H5_SAPDV (rRNA biogenesis protein RRP36 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S1H5_SAPDV)

HSP 1 Score: 160 bits (405), Expect = 1.130e-42
Identity = 99/200 (49.50%), Postives = 139/200 (69.50%), Query Frame = 2

Query:  323 RSGIAAHQQARGGDSGSGRNK---VPSRANKNRPQEASSRRAVGRFREVVVTKRKKSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQTLLTRLQQERAERSQGDRTRMAIREAKKKEREAIASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 913
            +SG A   +A   D GSG +       RANKN P+E +S+R V RFREV+  ++K SRDPRF+   G  KLN D+F+KAY FL  Y+D+E++E+KK LKK K+  R   L+  L   +QERAE  + D+ R A ++ K++EREA+A+GK  F+LK  +KK++ L+ +Y+ L+E G+LSKFM K+RKKNA KDHRWLP++R
Sbjct:   19 KSGFANAPKAASSDEGSGDDDDGPTTKRANKNCPREMTSKRPVARFREVLQIRKKASRDPRFDAASG--KLNEDLFKKAYTFLEDYKDAELDEVKKQLKKAKSATRKAALKEELASRKQERAETHRADKIREATQKRKREEREAVANGKSAFYLKRKDKKQVELKAKYDELQESGRLSKFMAKRRKKNANKDHRWLPTQR 216

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BLAST of mRNA_E-fasciculatus_F_contig1121.966.1 vs. uniprot
Match: A0A2P4X8B4_9STRA (rRNA biogenesis protein RRP36 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4X8B4_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.500e-41
Identity = 89/173 (51.45%), Postives = 127/173 (73.41%), Query Frame = 2

Query:  395 RANKNRPQEASSRRAVGRFREVVVTKRKKSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQTLLTRLQQERAERSQGDRTRMAIREAKKKEREAIASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 913
            RANKN+P E SS+RAVGRFR+VV  K+K+  DPRFE   G  +LN D+F K+Y FL  Y+  E++ELK+ LKK KN  +   L+  +   QQE  E+++ ++ + A+ + K++EREA+ASGK  F+LK  +KK+L L+ +++ L+E G+LSKFM KKRKKNA+KDHRWLP++R
Sbjct:   46 RANKNQPLELSSKRAVGRFRQVVEVKKKRVLDPRFEAQSG--RLNEDLFNKSYAFLDEYKQRELQELKQQLKKTKNMTKKDELKHEIALRQQEMTEKNKQEKIKSALTKRKREEREAVASGKGAFYLKRKDKKKLELQAKFQDLQETGRLSKFMAKKRKKNASKDHRWLPTQR 216

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BLAST of mRNA_E-fasciculatus_F_contig1121.966.1 vs. uniprot
Match: A0A1V9YXH6_9STRA (rRNA biogenesis protein RRP36 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXH6_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.690e-41
Identity = 89/173 (51.45%), Postives = 128/173 (73.99%), Query Frame = 2

Query:  395 RANKNRPQEASSRRAVGRFREVVVTKRKKSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQTLLTRLQQERAERSQGDRTRMAIREAKKKEREAIASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 913
            RANKN P+E +S+R V RFREV+  ++K SRDPRF+   G  KLN D+F+K+Y FL  Y+D+E++++KK L+K K++ R   L+  L   +QERAE  + DR R A  + K++EREA+A+GK  F+LK  +KK++ L+ +Y+ L+E G+LSKFM K+RKKNA KDHRWLP++R
Sbjct:   42 RANKNCPREMTSKRPVARFREVLQIRKKGSRDPRFDNASG--KLNEDLFKKSYAFLEDYKDAELDDVKKQLRKAKSKTRREELKADLATRKQERAESHRADRIREATLKRKREEREAVANGKSAFYLKRKDKKQIELKAKYDELQESGRLSKFMAKRRKKNANKDHRWLPTQR 212

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BLAST of mRNA_E-fasciculatus_F_contig1121.966.1 vs. uniprot
Match: A0A662WCQ7_9STRA (rRNA biogenesis protein RRP36 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WCQ7_9STRA)

HSP 1 Score: 156 bits (394), Expect = 5.790e-41
Identity = 87/176 (49.43%), Postives = 128/176 (72.73%), Query Frame = 2

Query:  386 VPSRANKNRPQEASSRRAVGRFREVVVTKRKKSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQTLLTRLQQERAERSQGDRTRMAIREAKKKEREAIASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 913
            +  RANKNRP E +S+RAVGRF++VV  K+++  DPRFE   G  +LN D+F K+Y FL  Y+  E+ ELK+ LK  K+  R   ++  ++   QER+E+ + ++ R A+ + K++EREA+ASGK PF+LK  +KK+L L+ +++ L+E G+LSKFM KKRKKNA+KDHRWLP++R
Sbjct:   55 IAHRANKNRPMELTSKRAVGRFKQVVEVKKRRVLDPRFEAQSG--RLNEDLFAKSYSFLDEYKQRELGELKRQLKSAKSTTRKEEIKHEISLRSQERSEKQKTEKIRDALTKRKREEREAVASGKNPFYLKRKDKKKLELQAKFQNLQETGRLSKFMAKKRKKNASKDHRWLPTQR 228

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BLAST of mRNA_E-fasciculatus_F_contig1121.966.1 vs. uniprot
Match: A0A7S2Y0G1_9STRA (rRNA biogenesis protein RRP36 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G1_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.740e-40
Identity = 100/191 (52.36%), Postives = 127/191 (66.49%), Query Frame = 2

Query:  386 VPSRANKNRPQEASSRRAVGRFREVVV---------TKRKKSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSG-----RLQTLLTRLQQERAERSQGDRTRMAIREAKKKEREAIASGKKP-FFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 913
            V  R NKNRP E SS+  VGR+R+V V          ++ + RDPRFEG  G  K+NYD+FRK Y FL  YQDSEI+ L+  LKK + + +SG      +Q  L +L+QER++R +GDR R  +   KK ER A+  GKK  F+LKG  KK + LEQRY+ LKE G+L KFMEKKRKKNA+KDHRWLP+ R
Sbjct:   31 VRKRENKNRPVERSSKVPVGRYRDVAVRPGDGSQSTAQKYQPRDPRFEGVSG--KMNYDLFRKTYQFLEQYQDSEIQALEAELKKAQKKSKSGAERVSEVQLALQKLRQERSQRVRGDRVRGVLGAHKKLERRAVQQGKKKAFYLKGKAKKEIVLEQRYQELKEKGQLKKFMEKKRKKNASKDHRWLPAAR 219

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BLAST of mRNA_E-fasciculatus_F_contig1121.966.1 vs. uniprot
Match: G4YS32_PHYSP (rRNA biogenesis protein RRP36 n=4 Tax=Phytophthora TaxID=4783 RepID=G4YS32_PHYSP)

HSP 1 Score: 154 bits (389), Expect = 2.040e-40
Identity = 87/173 (50.29%), Postives = 127/173 (73.41%), Query Frame = 2

Query:  395 RANKNRPQEASSRRAVGRFREVVVTKRKKSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQTLLTRLQQERAERSQGDRTRMAIREAKKKEREAIASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 913
            RANKN+P E SS+RAVGRFR+VV  K++++ DPRFE   G  +LN D+F K+Y FL  Y+  E++ELK+ LKK K+  +   L+  +   QQE  E+ + ++ + A+ + K++EREA+ASGK  F+LK  +KK+L L+ +++ L+E G+LSKFM KKRKKNA+KDHRWLP++R
Sbjct:   44 RANKNQPLELSSKRAVGRFRQVVEVKKRRALDPRFEAQSG--RLNEDLFNKSYAFLDDYKQRELQELKQQLKKTKSVTKKDELKHEIALRQQEMTEKQKTEKIKSALTKRKREEREAVASGKGAFYLKRKDKKKLELQAKFQDLQETGRLSKFMAKKRKKNASKDHRWLPTQR 214

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BLAST of mRNA_E-fasciculatus_F_contig1121.966.1 vs. uniprot
Match: A0A3M6VW06_9STRA (rRNA biogenesis protein RRP36 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VW06_9STRA)

HSP 1 Score: 153 bits (386), Expect = 5.710e-40
Identity = 87/173 (50.29%), Postives = 126/173 (72.83%), Query Frame = 2

Query:  395 RANKNRPQEASSRRAVGRFREVVVTKRKKSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQTLLTRLQQERAERSQGDRTRMAIREAKKKEREAIASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 913
            RANKN+P E SS+RAVGRFR+VV  K+K+  DPRFE   G  +LN D+F K+Y FL  Y+  E+++LK+ LKK K+  +   L+  +   QQE  E+ + D+ + A+ + K++EREA+ASGK  F+LK  +KK++ L+ +++ L+E G+LSKFM KKRKKNA+KDHRWLP++R
Sbjct:   45 RANKNQPLELSSKRAVGRFRQVVEVKKKRLLDPRFEAQSG--RLNEDLFNKSYAFLDEYKQRELQQLKQQLKKTKSVAKKDELKHEIALRQQEMTEKQKRDKIQSALTKRKREEREAVASGKGAFYLKRKDKKKVELQAKFQDLQETGRLSKFMAKKRKKNASKDHRWLPTQR 215

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BLAST of mRNA_E-fasciculatus_F_contig1121.966.1 vs. uniprot
Match: H3G8J4_PHYRM (rRNA biogenesis protein RRP36 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G8J4_PHYRM)

HSP 1 Score: 151 bits (382), Expect = 1.710e-39
Identity = 86/173 (49.71%), Postives = 124/173 (71.68%), Query Frame = 2

Query:  395 RANKNRPQEASSRRAVGRFREVVVTKRKKSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQTLLTRLQQERAERSQGDRTRMAIREAKKKEREAIASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 913
            RANKN+P E SS+RAVGRFR+VV  K+K+S DPRFE   G  +LN D+F K+Y F+  Y+  E++ELK   +K K  ++   L+  +   QQE  E+ + D+ R A+ + K++EREA+A+GK  F+LK  +KK+L L  +++ L++ G+LSKFM KKRKKNA+KDHRWLP++R
Sbjct:   37 RANKNQPLELSSKRAVGRFRQVVDVKKKRSLDPRFEAQSG--RLNEDLFAKSYAFVDEYKQRELQELKSQFQKTKGGDKKDELKHEIALRQQEMTEKKKQDKIRSALTKRKREEREAVATGKGAFYLKRKDKKKLELHAKFQDLQDTGRLSKFMAKKRKKNASKDHRWLPTQR 207

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig1121.966.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig1121.966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FJK8_ECTSI	4.250e-174	96.59	rRNA biogenesis protein RRP36 n=2 Tax=Ectocarpus T...	[more]
A0A835YP85_9STRA	4.840e-46	50.77	rRNA biogenesis protein RRP36 n=1 Tax=Tribonema mi...	[more]
T0S1H5_SAPDV	1.130e-42	49.50	rRNA biogenesis protein RRP36 n=2 Tax=Saprolegnia ...	[more]
A0A2P4X8B4_9STRA	1.500e-41	51.45	rRNA biogenesis protein RRP36 n=2 Tax=Phytophthora...	[more]
A0A1V9YXH6_9STRA	2.690e-41	51.45	rRNA biogenesis protein RRP36 n=1 Tax=Achlya hypog...	[more]
A0A662WCQ7_9STRA	5.790e-41	49.43	rRNA biogenesis protein RRP36 n=2 Tax=Nothophytoph...	[more]
A0A7S2Y0G1_9STRA	1.740e-40	52.36	rRNA biogenesis protein RRP36 (Fragment) n=1 Tax=F...	[more]
G4YS32_PHYSP	2.040e-40	50.29	rRNA biogenesis protein RRP36 n=4 Tax=Phytophthora...	[more]
A0A3M6VW06_9STRA	5.710e-40	50.29	rRNA biogenesis protein RRP36 n=1 Tax=Peronospora ...	[more]
H3G8J4_PHYRM	1.710e-39	49.71	rRNA biogenesis protein RRP36 n=1 Tax=Phytophthora...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig1121	contig	E-fasciculatus_F_contig1121:15794..19910 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	507.7
Seed ortholog evalue	3.8e-141
Seed eggNOG ortholog	2880.D7FJK8
Preferred name	RRP36
KEGG rclass	RC00031
KEGG ko	ko:K00025,ko:K03035,ko:K10408,ko:K14771,ko:K14795
KEGG Reaction	R00342,R07136
KEGG Pathway	ko00020,ko00270,ko00620,ko00630,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko03050,ko04964,ko05016,ko05169,map00020,map00270,map00620,map00630,map00710,map01100,map01110,map01120,map01130,map01200,map03050,map04964,map05016,map05169
KEGG Module	M00009,M00011,M00012,M00168,M00171,M00341
GOs	GO:0000462,GO:0000469,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:1901360,GO:1990904
EggNOG free text desc.	cleavage involved in rRNA processing
EggNOG OGs	KOG3190@1,KOG3190@2759
EC	1.1.1.37
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko03009,ko03051,ko04812
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Protein of unknown function DUF947
Ec32 ortholog	Ec-04_006480.1
Exons	8
Model size	1495
Cds size	918
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig1121.966.1	prot_E-fasciculatus_F_contig1121.966.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig1121 15798..19337 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927628.886237-UTR-E-fasciculatus_F_contig1121:15793..15797	1622927628.886237-UTR-E-fasciculatus_F_contig1121:15793..15797	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1121 15794..15797 +
1695995626.4393625-UTR-E-fasciculatus_F_contig1121:15793..15797	1695995626.4393625-UTR-E-fasciculatus_F_contig1121:15793..15797	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1121 15794..15797 +
1622927629.0866983-UTR-E-fasciculatus_F_contig1121:19337..19910	1622927629.0866983-UTR-E-fasciculatus_F_contig1121:19337..19910	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1121 19338..19910 +
1695995626.5454714-UTR-E-fasciculatus_F_contig1121:19337..19910	1695995626.5454714-UTR-E-fasciculatus_F_contig1121:19337..19910	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1121 19338..19910 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig1121:15794..19910+
coding sequence from alignment at E-fasciculatus_F_contig1121:15794..19910+

protein sequence of mRNA_E-fasciculatus_F_contig1121.966.1

>prot_E-fasciculatus_F_contig1121.966.1 ID=prot_E-fasciculatus_F_contig1121.966.1|Name=mRNA_E-fasciculatus_F_contig1121.966.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=306bp
MTLNARDSGEERMRKRAEMQPSDDEVSGQSSGEEASDNDSWDDEDLDENE
AATEEQPNKEQGESIGERLIKLSHGAGPSRRKRHIRDSSGGEQKQASAAK
TARDRARSGIAAHQQARGGDSGSGRNKVPSRANKNRPQEASSRRAVGRFR
EVVVTKRKKSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKS
LKKEKNQERSGRLQTLLTRLQQERAERSQGDRTRMAIREAKKKEREAIAS
GKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLP
SKRQK*

mRNA from alignment at E-fasciculatus_F_contig1121:15794..19910+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig1121.966.1 ID=mRNA_E-fasciculatus_F_contig1121.966.1|Name=mRNA_E-fasciculatus_F_contig1121.966.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4117bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1121:15794..19910+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGATGACTCTCAACGCACGGGATTCGGGAGAAGAGCGAATGAGGAAGA
GGGCCGAGATGCAGCCTTCTGACGATGAGGTCAGCGGGCAAAGCAGTGGA
GAGGAGGCCTCCGACAATGATAGCTGGGACGACGAGGACTTGGACGAAAA
TGAAGCCGCAACGGAAGAACAGCCAAACAAGGAGCAGGTCCGTTGCATTT
CCGGAGCGTACTCGAAGAGACGCACCTATTTTTTTTGTTGTGCAGCGGTT
GACTGCTGTAGCTAGTGTCACACGGAGGCTCAGAGGAGTCTCCTTGGTCA
AGTCAAGCCTCTCACGCCCTTAGAGCGGAAGAATGCGGTGTAGTTCCGAC
TCGCATTCACGAGGTAACATACCCTCAATGTCGTATTGTTGAGTAAGTTT
CATGTGCGGCAACTGTCGTATTTGCAAGTAACTTGTAGGTGATGAACCTC
TTTCATGGAGTATACAGCAGTGTTGCTGTCACAGGTGGAATAAAAATCTT
CCTCGTTGATCTGGACTCGTTTAAGTTCTTAAACAACGCGTTACGTGCCA
CGTCAATGACGGGTCCGTATGTCTTGATGCTCAACACCCCAATAGGTAGA
ACGAACGCATTGAGTTTGAAGTATTTTCATCTGTCAGCCGGTTAGCGGGG
ACAGAGCTGATCGTATAAACACACACACAACACGCAGCCTTTCGTGCCGC
ACCCGCCCTTTGTCCGTGTACAGGGAGAATCGATTGGCGAGCGTCTCATC
AAACTGTCGCATGGAGCTGGGCCATCAAGGCGAAAACGCCACATTAGAGA
CAGCAGTGGCGGCGAACAAAAACAAGCGAGCGCCGCAAAGGTATGGTGTG
CCGTGGTTTGAACGCGCGTATGGAACGCTAATTACAGTCCTGCAGCTTTT
ACGTATCAGCAATCGGCAGAGAGAGTGAGAGTGCAGGTTTGTATTTTCAG
CCGGTGCTCTGGGCCAGGAACAACATCAACGTACCCATCAGCAACGAAAA
CTTTATGTTCGAGCCTACGTCTGCAGGTTAGGTTTAGATATCTCTGGACT
GCTTAGTTTCTTTGGATTGATTTGGCAGGCTTTTCCAGTAAATGGAGCAC
TCTGCATTCTCGGCCTCGATGCAGTTTTAGATCGAGGACGACCTTACCAA
ATGCGTGACATACATGTGTACTGATTGTAGACGATGTTCAACAGAATATG
GGAGCTGTTTCTTGAAAGTTTGGTTCTTCCCTCGTGGTTTTGTCTGGCTC
GCCTTTTTCTTCAAGTACAAAACTGTGAGCACACGATACCCGTCGCTAAG
GTTGTACTGTTTGAGGCACTCTACACAGCTACGTTGGCACTACGTTTATT
TCAAAGCACATGACACGGTTCGGGGCGACCTTCGCGACGCGTTCTTGTCG
CCGCACAGACGGCACGGGATCGCGCACGCTCCGGCATTGCTGCTCACCAG
CAGGCAAGAGGGGGGGATTCGGGATCCGGCCGTAACAAGGTGCCAAGTCG
AGCCAACAAGAACAGACCTCAAGAGGTAAGGTTCATACCTATGAAGTCAA
ACGGTTTGAGTGCGCACATCGCGCGCGATATATACAGCAGAGCGAGCCTG
GAAGAACTAGTTGTCGTGTGTGGCCATTGACGTGGTGTCTCACATTTTAT
TGTGCATCCTGAGGGTCTTAAACGCTTGCTGTCGATCGGTCGTGTCGTTT
TCCAGGCATCGTCTCGCCGGGCCGTCGGGCGATTCAGAGAAGTGGTCGTG
ACCAAGCGCAAGAAATCTAGAGGTATGTGTCTCGGCGCTCTCTGGCACCG
ACTCGAGGCAGGACCCGACCTAGTTCCTGCAGGTCTACTGGAGTACTGAT
TTATGTAGTCAAGTGACCGGCTAATCGTCAGGCAAGCTGATGGTGTTCTC
TGGCGGCGTCTGTGACCCCACCGACGTACTGTGGATTCGTGCAGGGTGCA
GGATTTGAGTTGTTCCCTGTGCCCGTCCATTGCGCATCGTGCCACGTGAT
GTTCTATCTGCAGATCCACGATTCGAGGGCGGAGGGGGGTCCAGCAAGCT
CAACTATGATATTTTCCGGAAGGCATACGGCTTTCTCGGGACGTATCAAG
ACAGCGAAATCGAAGAGCTGAAAAAGTCTCTCAAGAAGGAGAAAAACCAG
GTGAGCAGTACAAATGATCCCAAAAACCCAACGCAGAGAGTCTGCTCTTC
CTTTGCTGCTCCACACCGTCAAATCAGCCCAGTGTAGGTTGTTTGCTTGG
CTCTCTTGGGGGGCTGTGGACACGTCCTTGATACTCCGACCTGCATTTGC
AGGGGAGTAGGAGTTTTCTGATCATAGTTTTTAAGGGCCCTATCATCCAT
AACGTATCTTGTGCCATCCACGGCCTATGCGCCCCTCCAGTGTGCGACAT
GCAACCCCATTGCCCCTTGCTGCGACCGTTGTAACCCCGCCCCACGTCCG
CCTGCTTTCTCCATTGGTTTTCGTCCTTCCAGGAGCGTTCTGGGAGACTG
CAGACACTCTTGACGCGTCTTCAGCAAGAAAGGTAGATGAATCTATGCAT
TGTACGACAAAGCATTCTTGTTGTTTGGCAATTTTCTGGTATACCCTCCG
TTAGCATTGATTAGGATACATCGCGGTCGGTTTGTATGTCTACTTGAATT
CCAGAAGGAGAAACTGTTGCGAAAGTAGTCGGCAACGTTCCTTTACCAAT
AGGTAGTGTACAATACCCAGGTGTTTCATGATGCTACACGATGCCGGAAG
ATCCAAACTTTTCTGGAGGTTTGTAGGGTATTGTCATGCCTAACTTCAAA
CTTCGGTTACCTCGCTGGGTTGATCGAGACCAGAGATTCCGCGAGAGTCG
CTTACGCTTTCTTGTGCTCTGGCGTTTGTGTCATCTCCATATTGCCAACG
CGTTGCTCGAACGCCGGTAGACGTTAATGATCTCAAGTCTGACGATACAT
CGTACGCTTACCCCGTTCCAGATGTTCGGGTGCTCATCAGCGTTGTTCGT
TTTAAGTGTGAACTGGCAAGTGCGTTACGCTTTACTAGTAGCCTTTTGTC
GACTTTGACGACTCTAGCGTTCAATACCCCGCTGTGTATTCAGGGCGGAA
CGATCTCAGGGCGATCGGACGCGGATGGCAATCCGTGAAGCAAAGAAGAA
GGAGCGCGAAGCCATCGCCAGTGGGAAAAAGCCATTCTTCCTCAAGGGCA
GTGAGAAGAAAAGGCTATCTCTCGAGCAAAGGTGTGATAAGGATGACAAG
CTGTTTATCACTCTTGCACGCGAGCACTCAACATTTTGGAGAAGCCCCGG
TGCTCTCGAGAGCGCGACTAGAGTTCACCCAATCCGCTCTGGAGAGAGCG
ACGCCCTGGTTGAGGGGAGTGCTTCGATTCCCCGTTGTAGTGTCTGTCGG
TAGCTAACGCTTTTACGACCTCCCTTCTCTAACAGGTACGAGGGCCTCAA
GGAGGACGGCAAGCTGTCCAAGTTCATGGAAAAGAAGAGGAAGAAGAATG
CTGCGAAGGACCACCGATGGCTTCCAAGCAAGCGCCAGAAGTGATCTCCC
GTGTGGGCGACACAAGGTCATCCAAGGGTGGTTCAATGCAATTATCCTGC
TGGCGAATGCTGATAGCTTTTTTGCGGTTGACATTTTTTTGCTCCTACTC
TTTCGGTGGTTATCTCCCATAGCACAAAGCGGGGGCTCCGATGTCACGCC
GAAAGCATTCATGGCCTACATCGATTCAAAGTCGTACAGGGAAACATGCG
ACGAATCAACCAAATTCGTTTGTGTTTCATGTACGCATGCTCTGTGTTGA
AAAATAATGTTGTGTGCTGCGCAAATCATCGGCGATCTACTCTTGCTGCG
TACATATGTAGCTTGTAGATCTGAGTCGACAAAAGTAGTGAATCGCCGAA
AAATGGGTTGGTGCGTTGCGAGCAAACTGCGTGCAAAGCAGATCGTGGGC
GTTGGAAGTATGGGATGATTTTTCGAATCTCGTTTTCTCTTCCCCACCCT
GCAATATGAATCCACTTACGTATGTTGCGTACGTGTGACTATGATCGAGC
AATATGTGACACCTGTGTAGGATCGTGGGATCGCTACATTGTAGGAGGAG
GTGAGATTGTGCCGGAC

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1121:15794..19910+

>mRNA_E-fasciculatus_F_contig1121.966.1 ID=mRNA_E-fasciculatus_F_contig1121.966.1|Name=mRNA_E-fasciculatus_F_contig1121.966.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1836bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1121:15794..19910+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACTCTCAACGCACGGGATTCGGGAGAAGAGCGAATGAGGAAGAGGGC
CGAGATGCAGCCTTCTGACGATGAGGTCAGCGGGCAAAGCAGTGGAGAGG
AGGCCTCCGACAATGATAGCTGGGACGACGAGGACTTGGACGAAAATGAA
GCCGCAACGGAAGAACAGCCAAACAAGGAGCAGATGACTCTCAACGCACG
GGATTCGGGAGAAGAGCGAATGAGGAAGAGGGCCGAGATGCAGCCTTCTG
ACGATGAGGTCAGCGGGCAAAGCAGTGGAGAGGAGGCCTCCGACAATGAT
AGCTGGGACGACGAGGACTTGGACGAAAATGAAGCCGCAACGGAAGAACA
GCCAAACAAGGAGCAGGGAGAATCGATTGGCGAGCGTCTCATCAAACTGT
CGCATGGAGCTGGGCCATCAAGGCGAAAACGCCACATTAGAGACAGCAGT
GGCGGCGAACAAAAACAAGCGAGCGCCGCAAAGGGAGAATCGATTGGCGA
GCGTCTCATCAAACTGTCGCATGGAGCTGGGCCATCAAGGCGAAAACGCC
ACATTAGAGACAGCAGTGGCGGCGAACAAAAACAAGCGAGCGCCGCAAAG
ACGGCACGGGATCGCGCACGCTCCGGCATTGCTGCTCACCAGCAGGCAAG
AGGGGGGGATTCGGGATCCGGCCGTAACAAGGTGCCAAGTCGAGCCAACA
AGAACAGACCTCAAGAGACGGCACGGGATCGCGCACGCTCCGGCATTGCT
GCTCACCAGCAGGCAAGAGGGGGGGATTCGGGATCCGGCCGTAACAAGGT
GCCAAGTCGAGCCAACAAGAACAGACCTCAAGAGGCATCGTCTCGCCGGG
CCGTCGGGCGATTCAGAGAAGTGGTCGTGACCAAGCGCAAGAAATCTAGA
GGCATCGTCTCGCCGGGCCGTCGGGCGATTCAGAGAAGTGGTCGTGACCA
AGCGCAAGAAATCTAGAGATCCACGATTCGAGGGCGGAGGGGGGTCCAGC
AAGCTCAACTATGATATTTTCCGGAAGGCATACGGCTTTCTCGGGACGTA
TCAAGACAGCGAAATCGAAGAGCTGAAAAAGTCTCTCAAGAAGGAGAAAA
ACCAGATCCACGATTCGAGGGCGGAGGGGGGTCCAGCAAGCTCAACTATG
ATATTTTCCGGAAGGCATACGGCTTTCTCGGGACGTATCAAGACAGCGAA
ATCGAAGAGCTGAAAAAGTCTCTCAAGAAGGAGAAAAACCAGGAGCGTTC
TGGGAGACTGCAGACACTCTTGACGCGTCTTCAGCAAGAAAGGAGCGTTC
TGGGAGACTGCAGACACTCTTGACGCGTCTTCAGCAAGAAAGGGCGGAAC
GATCTCAGGGCGATCGGACGCGGATGGCAATCCGTGAAGCAAAGAAGAAG
GAGCGCGAAGCCATCGCCAGTGGGAAAAAGCCATTCTTCCTCAAGGGCAG
TGAGAAGAAAAGGCTATCTCTCGAGCAAAGGGCGGAACGATCTCAGGGCG
ATCGGACGCGGATGGCAATCCGTGAAGCAAAGAAGAAGGAGCGCGAAGCC
ATCGCCAGTGGGAAAAAGCCATTCTTCCTCAAGGGCAGTGAGAAGAAAAG
GCTATCTCTCGAGCAAAGGTACGAGGGCCTCAAGGAGGACGGCAAGCTGT
CCAAGTTCATGGAAAAGAAGAGGAAGAAGAATGCTGCGAAGGACCACCGA
TGGCTTCCAAGCAAGCGCCAGAAGTGAGTACGAGGGCCTCAAGGAGGACG
GCAAGCTGTCCAAGTTCATGGAAAAGAAGAGGAAGAAGAATGCTGCGAAG
GACCACCGATGGCTTCCAAGCAAGCGCCAGAAGTGA