mRNA_E-fasciculatus_F_contig11205.961.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11205.961.1
Unique NamemRNA_E-fasciculatus_F_contig11205.961.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11205.961.1 vs. uniprot
Match: A0A6H5KCT2_9PHAE (Fn3_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.220e-20
Identity = 72/136 (52.94%), Postives = 76/136 (55.88%), Query Frame = 3 
Query:    3 RSSGFPMGGGKGSRAGPKEVALELGRVGFEYDGEEDRDFAALKLQDEDHRVRGGGSSNSVVPSRAVSXXXXXXXXXXXXXXXXLLGMTQAIRREDSGGGSRLSREIS-----------LLQESSEHDTLLGGRQGE 377
            R SGFPMG GKG RAGPKEVALELGRVGFEYDGEE RDFAA +LQ ED                   XX              LLG   A RRED G G R +RE+S           L +ESSEHDTLLGG QGE
Sbjct:  799 RRSGFPMGRGKG-RAGPKEVALELGRVGFEYDGEEARDFAAFELQGEDGVGGXXXXXXXXXXXXXXXXXVHRRLGSRGGSGGALLGTAPASRREDFGAGFRSNREMSVDEEISPSPALLQEESSEHDTLLGG-QGE 932
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11205.961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCT2_9PHAE1.220e-2052.94Fn3_like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11205contigE-fasciculatus_F_contig11205:2..735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size734
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11205.961.1prot_E-fasciculatus_F_contig11205.961.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11205 22..438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927627.6897357-UTR-E-fasciculatus_F_contig11205:1..211622927627.6897357-UTR-E-fasciculatus_F_contig11205:1..21Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11205 2..21 +
1695995625.9713347-UTR-E-fasciculatus_F_contig11205:1..211695995625.9713347-UTR-E-fasciculatus_F_contig11205:1..21Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11205 2..21 +
1622927627.7189584-UTR-E-fasciculatus_F_contig11205:438..7351622927627.7189584-UTR-E-fasciculatus_F_contig11205:438..735Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11205 439..735 +
1695995625.9891424-UTR-E-fasciculatus_F_contig11205:438..7351695995625.9891424-UTR-E-fasciculatus_F_contig11205:438..735Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11205 439..735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927627.704166-CDS-E-fasciculatus_F_contig11205:21..4381622927627.704166-CDS-E-fasciculatus_F_contig11205:21..438Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11205 22..438 +
1695995625.980009-CDS-E-fasciculatus_F_contig11205:21..4381695995625.980009-CDS-E-fasciculatus_F_contig11205:21..438Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11205 22..438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11205.961.1

>prot_E-fasciculatus_F_contig11205.961.1 ID=prot_E-fasciculatus_F_contig11205.961.1|Name=mRNA_E-fasciculatus_F_contig11205.961.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=139bp
MGGGKGSRAGPKEVALELGRVGFEYDGEEDRDFAALKLQDEDHRVRGGGS
SNSVVPSRAVSSVHRRLSSGGGGSGGALLGMTQAIRREDSGGGSRLSREI
SLLQESSEHDTLLGGRQGEGAEARPRETDRRARQTSGT*
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mRNA from alignment at E-fasciculatus_F_contig11205:2..735+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11205.961.1 ID=mRNA_E-fasciculatus_F_contig11205.961.1|Name=mRNA_E-fasciculatus_F_contig11205.961.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=734bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11205:2..735+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGGAGTAGTGGGTTTCCTATGGGGGGAGGGAAGGGCAGCAGGGCGGGG
CCGAAGGAGGTGGCGCTAGAGCTTGGCCGCGTGGGGTTCGAGTACGATGG
GGAAGAGGATCGGGACTTCGCTGCCTTGAAGCTGCAAGACGAAGATCACC
GCGTTAGGGGCGGGGGCAGCAGTAATAGTGTCGTCCCTTCAAGAGCAGTA
TCGAGTGTCCACCGTAGGCTTAGTTCCGGCGGGGGTGGTAGCGGAGGGGC
ATTGTTGGGGATGACACAGGCGATTCGTCGGGAGGACTCAGGGGGGGGTT
CGCGTTTGAGTAGGGAGATTTCGCTTTTGCAAGAGTCGAGTGAGCACGAC
ACGCTTCTCGGAGGAAGGCAGGGTGAGGGTGCAGAGGCGAGACCAAGAGA
GACAGACAGACGGGCTAGGCAGACATCAGGGACGTGACGGTTTGCAGCAT
CAGCATTAGCATTAGCATTTGTGAGAAACAACTTATTTTTTTGTGTACGG
TCTTCCATGTAGTAAAAAACTTCGGCCTCTCTAAAAAACATGTGGTACAA
CGGCAGTGTGGTGTCACGGACGATATCGAGTGGTAACTTGGAAGCTTCGC
TCGTTTGCAAACTATTGAATACTTATTGCCCCCCCCCTGTGAATTTCCCA
TACCGCGTTTGGTCTGGTGATAGTAATGAGCTTGTCATCTTTTGCCCGAA
ATTCGTGAGCGTTTGTGGTTTAAAGTCAACTAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11205:2..735+

>mRNA_E-fasciculatus_F_contig11205.961.1 ID=mRNA_E-fasciculatus_F_contig11205.961.1|Name=mRNA_E-fasciculatus_F_contig11205.961.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=834bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11205:2..735+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGGAGGGAAGGGCAGCAGGGCGGGGCCGAAGGAGGTGGCGCTAGA
GCTTGGCCGCGTGGGGTTCGAGTACGATGGGGAAGAGGATCGGGACTTCG
CTGCCTTGAAGCTGCAAGACGAAGATCACCGCGTTAGGGGCGGGGGCAGC
AGTAATAGTGTCGTCCCTTCAAGAGCAGTATCGAGTGTCCACCGTAGGCT
TAGTTCCGGCGGGGGTGGTAGCGGAGGGGCATTGTTGGGGATGACACAGG
CGATTCGTCGGGAGGACTCAGGGGGGGGTTCGCGTTTGAGTAGGGAGATT
TCGCTTTTGCAAGAGTCGAGTGAGCACGACACGCTTCTCGGAGGAAGGCA
GGGTGAGGGTGCAGAGGCGAGACCAAGAGAGACAGACAGACGGGCTAGGC
AGACATCAGGGACGTGAATGGGGGGAGGGAAGGGCAGCAGGGCGGGGCCG
AAGGAGGTGGCGCTAGAGCTTGGCCGCGTGGGGTTCGAGTACGATGGGGA
AGAGGATCGGGACTTCGCTGCCTTGAAGCTGCAAGACGAAGATCACCGCG
TTAGGGGCGGGGGCAGCAGTAATAGTGTCGTCCCTTCAAGAGCAGTATCG
AGTGTCCACCGTAGGCTTAGTTCCGGCGGGGGTGGTAGCGGAGGGGCATT
GTTGGGGATGACACAGGCGATTCGTCGGGAGGACTCAGGGGGGGGTTCGC
GTTTGAGTAGGGAGATTTCGCTTTTGCAAGAGTCGAGTGAGCACGACACG
CTTCTCGGAGGAAGGCAGGGTGAGGGTGCAGAGGCGAGACCAAGAGAGAC
AGACAGACGGGCTAGGCAGACATCAGGGACGTGA
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