mRNA_E-fasciculatus_F_contig1119.943.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1119.943.1 vs. uniprot
Match: D8LDV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV6_ECTSI) HSP 1 Score: 1085 bits (2805), Expect = 0.000e+0 Identity = 595/728 (81.73%), Postives = 619/728 (85.03%), Query Frame = 1
Query: 1 RYELDFWPLANANEFRANLRTRPLRPSSFRIAAFGGSRHPFGFIAPTITTTAAAVTAGRVKIANYNSGRDTVDTDSGAGENVSCPGKNLLVRERWPFRALEAGAGLRVNSSGAGSEAAAISRPELNRLAAAKAESERARKHDXXXXXXXGGGYAAELSRAEDYGGGWRHPGSTALAMRLVTNESSLAEMSRESLLGNGGSDAISVCVGFGRLSAWQAMTDEVELPVQGLDLVIHLGNEINAAASLNRDEVAQVAERFAQHARLVGEKLPSKEAVDQSAGTEVSGAKVGRSPLVRPPQLPVEDPMALGERDEEDISQLKAFFIKLHDEAEKDRKRDDGDFRHRRIEEPPLVIHTQLPEDEGKENGGVSSHGVPGPDSXXXXXXXXXXXXXXXXXXXXXXXXGTITKRFDNKSVAGVDGAWELVTEEVAERVRDPYRVAWGLPWAKAVMASAPNTLLAFTPLDLDDGCQPLSSVQPVNEQGANVPLQRASTDAGRGQHLDHPACAARVREERLRAWVEYQTALASGGGKTTKKTPGLDTAXXXXXXXXXXXXXXXXXXXSDKKEADRGSYQEYGGVGVLMLDVWGNQPWRLDEAGMATAKGSDAEGPGFHPKALLSKKQEKLVKRALTSSTTNALLICSGTPMVAEPIVHPKAPPLSEAEQKSRDKALDFAKKELKKLGKAGLAEIKRMAEEEKIPKLAMLSPEEVGAMDAFYDELRPSYHWSYHSPYLQ 2184
RYELDFWPLANANEFRANLRTRPLRPSSFRIAAFGGSRHPFGFI PT+TTT AV+AGR K+ANYN+GRD D DSGAGEN + PGK LLVRERWPFRALEAG GLRV SG E AAISRPE NR+AAAKAESERA KHD XXXXXX A L AED GGGWRHP STALAM L+TN L EMSRESL GNGGSDAISVC+ FGRLSAWQAM DEVELPVQGLDL+IHLGNEINAAASLNRDEVA+VAE F+QHARL G +LPSKEAVDQSA E SGAK GRS LV+PPQLPVEDPMALGERDEEDI+QL+AF IKLHDEAEKDRKRDDGDFRHRRIEEPPL IHTQLPED+GKE+GGV SHG PDS XX GTITKRFD+ V GVDGAWELV EEVAERVRDPYRVAWGLPWAKAVMASAPNTLLAFTPLDLDDGCQ LS +Q V+E GA VP QRASTD LDHPA ARVREERLRAWVEYQTALASGGGKTTKKTPGLDTA XXXXXXXX SDK+E DRGSYQEYGGVGVLMLDVWGNQ WRLDEAGMATAKG DAEGPGFHPKALLSKKQEKLVK+ALTSST NAL+ICSGTPMVAEPIVHPKAPPLSEAEQKSRDKAL+FAKKELKKLGKAGLAEIKRM EEEKIPKLAMLSPEEVGAMDAFYDELRP YHWSYHSPYLQ
Sbjct: 2065 RYELDFWPLANANEFRANLRTRPLRPSSFRIAAFGGSRHPFGFIVPTVTTTTPAVSAGRRKVANYNTGRDMADPDSGAGENTASPGKTLLVRERWPFRALEAGGGLRVIGSGVDGEDAAISRPESNRVAAAKAESERAWKHDSXXXXXXXXXDTAGLECAEDSGGGWRHPVSTALAMGLLTNGPCLEEMSRESLFGNGGSDAISVCLRFGRLSAWQAMADEVELPVQGLDLIIHLGNEINAAASLNRDEVAKVAEHFSQHARLGGVELPSKEAVDQSARKEASGAKAGRSLLVKPPQLPVEDPMALGERDEEDIAQLEAFIIKLHDEAEKDRKRDDGDFRHRRIEEPPLAIHTQLPEDQGKEDGGVPSHGGASPDSERGGGARDSXXGDGGGGECN----GTITKRFDDNRVDGVDGAWELVAEEVAERVRDPYRVAWGLPWAKAVMASAPNTLLAFTPLDLDDGCQSLS-MQRVDEHGATVPRQRASTDGV--VDLDHPASVARVREERLRAWVEYQTALASGGGKTTKKTPGLDTAASADDKGVNDXXXXXXXXKSDKRETDRGSYQEYGGVGVLMLDVWGNQSWRLDEAGMATAKGGDAEGPGFHPKALLSKKQEKLVKKALTSSTANALVICSGTPMVAEPIVHPKAPPLSEAEQKSRDKALNFAKKELKKLGKAGLAEIKRMEEEEKIPKLAMLSPEEVGAMDAFYDELRPCYHWSYHSPYLQ 2785
BLAST of mRNA_E-fasciculatus_F_contig1119.943.1 vs. uniprot
Match: A0A6H5KUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY9_9PHAE) HSP 1 Score: 681 bits (1757), Expect = 8.060e-215 Identity = 436/693 (62.91%), Postives = 463/693 (66.81%), Query Frame = 1
Query: 1 RYELDFWPLANANEFRANLRTRPLRPSSFRIAAFGGSRHPFGFIAPTITTTAAAVTAGRVKIANYNSGRDTVDTDSGAGENVSCPGKNLLVRERWPFRALEAGAGLRVNSSGAGSEAAAISRPELNRLAAAKAESERARKHDXXXXXXXGGGYAAELSRAEDYGGGWRHPGSTALAMRLVTNESSLAEMSRESLLGNGGSDAISVCVGFGRLSAWQAMTDEVELPVQGLDLVIHLGNEINAAASLNRDEVAQVAERFAQHARLVGEKLPSKEAVDQSAGTEVSGAKVGRSPLVRPPQLPVEDPMALGERDEEDISQLKAFFIKLHDEAEKDRKRDDGDFRHRRIEEPPLVIHTQLPEDEGKENGGVSSHGVPGPDSXXXXXXXXXXXXXXXXXXXXXXXXGTITKRFDNKSVAGVDGAWELVTEEVAERVRD-PYRVAWGLPWAKAVMASAPNTLLAFTPLDLDDGCQPLSSVQPVNEQGANVPLQRASTDAGRGQHLDHPACAARVREERLRAWVEYQTALASGGGKTTKKTPGLDTAXXXXXXXXXXXXXXXXXXXSDKKEADRGSYQEYGGVGVLMLDVWGNQPWRLDEAGMATAKGSDAEGPGFHPKALLSKKQEKLVKRALTSSTTNALLICSGTPMVAEPIVHPKAPPLSEAEQKSRDKALDFAKKELKKLGKAGLAEIKRMAEEEK 2076
RYELDFWPLANANEFRANLRTR LRPSSFRIAAFGGSRHPFGFIAPT+T +AAAV+AGR K+ANYN+GRDT D DS AGEN + P K LLVRERWPF ALEAG GLRV SG + AAISRPE NR+AAAK ES XXXXXXX A L AED+GGGWRHP ST+LAM L+TN L EMSRE RDEVA+VAE F+QHARL G + PSKEAVDQSA E SG KVGRS LVRPPQLPVEDPMALGERDEEDISQL+AF IK DRKRDDGDFRHRRIEEPPL IHTQL EDEGKE+GGV SHG PGPDS XXXXXXXXXXX GTITKRFD+ V GVDGAWELV EEV R P + G A + + N A + + L V P +GA VP QRASTD G +HLDHPAC ARVREERLRAWVEYQTALA GGGKTTKKTP LDT XXXXXXX SDK+E DRGSYQEYGGVGVLMLDVWGNQ WRLDEAGMATAKG DAEGPGFHPKALLSKK + APPLSEAEQKSRDKALDFAKKELKKLGKAG AE+KRM EEEK
Sbjct: 2310 RYELDFWPLANANEFRANLRTRQLRPSSFRIAAFGGSRHPFGFIAPTVTASAAAVSAGRRKVANYNTGRDTADPDSRAGENTASPEKTLLVRERWPFCALEAGGGLRVIGSGVDGKDAAISRPESNRVAAAKTESXXXXXXXXXXXXXXXXXDTAGLGCAEDFGGGWRHPVSTSLAMGLLTNGPCLEEMSRE------------------------------------------------------RDEVAEVAEHFSQHARLGGVEFPSKEAVDQSAPMEASGDKVGRSLLVRPPQLPVEDPMALGERDEEDISQLEAFIIK-------DRKRDDGDFRHRRIEEPPLAIHTQLLEDEGKEDGGVPSHGGPGPDSDRGDDASDXXXXXXXXXXXN----GTITKRFDDDRVDGVDGAWELVAEEVGGGARARPVSCSMG-----ASVGQSGNGECAQYFTRVHSIGEFLQEVIPSVFEGATVPRQRASTDGGGVRHLDHPACVARVREERLRAWVEYQTALAPGGGKTTKKTPALDTVASANDKSGTDGXXXXXXXKSDKRETDRGSYQEYGGVGVLMLDVWGNQSWRLDEAGMATAKGGDAEGPGFHPKALLSKKAQ--------------------------------APPLSEAEQKSRDKALDFAKKELKKLGKAGQAEMKRMDEEEK 2900 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1119.943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1119.943.1 >prot_E-fasciculatus_F_contig1119.943.1 ID=prot_E-fasciculatus_F_contig1119.943.1|Name=mRNA_E-fasciculatus_F_contig1119.943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=731bp RYELDFWPLANANEFRANLRTRPLRPSSFRIAAFGGSRHPFGFIAPTITTback to top mRNA from alignment at E-fasciculatus_F_contig1119:428..6006+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1119.943.1 ID=mRNA_E-fasciculatus_F_contig1119.943.1|Name=mRNA_E-fasciculatus_F_contig1119.943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5579bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1119:428..6006+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1119:428..6006+ >mRNA_E-fasciculatus_F_contig1119.943.1 ID=mRNA_E-fasciculatus_F_contig1119.943.1|Name=mRNA_E-fasciculatus_F_contig1119.943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4386bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1119:428..6006+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |