mRNA_E-fasciculatus_F_contig1118.934.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1118.934.1
Unique NamemRNA_E-fasciculatus_F_contig1118.934.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1118.934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1118contigE-fasciculatus_F_contig1118:392..1062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size671
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1118.934.1prot_E-fasciculatus_F_contig1118.934.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1118 682..1026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927623.5255857-UTR-E-fasciculatus_F_contig1118:391..6811622927623.5255857-UTR-E-fasciculatus_F_contig1118:391..681Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1118 392..681 +
1695995624.0326092-UTR-E-fasciculatus_F_contig1118:391..6811695995624.0326092-UTR-E-fasciculatus_F_contig1118:391..681Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1118 392..681 +
1622927623.551956-UTR-E-fasciculatus_F_contig1118:1026..10621622927623.551956-UTR-E-fasciculatus_F_contig1118:1026..1062Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1118 1027..1062 +
1695995624.055226-UTR-E-fasciculatus_F_contig1118:1026..10621695995624.055226-UTR-E-fasciculatus_F_contig1118:1026..1062Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1118 1027..1062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927623.5396874-CDS-E-fasciculatus_F_contig1118:681..10261622927623.5396874-CDS-E-fasciculatus_F_contig1118:681..1026Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1118 682..1026 +
1695995624.0438979-CDS-E-fasciculatus_F_contig1118:681..10261695995624.0438979-CDS-E-fasciculatus_F_contig1118:681..1026Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1118 682..1026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1118.934.1

>prot_E-fasciculatus_F_contig1118.934.1 ID=prot_E-fasciculatus_F_contig1118.934.1|Name=mRNA_E-fasciculatus_F_contig1118.934.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp
MLRHLVTKRVRMRTCPHALLQLSFLPDRSYTAAVGQSKCSGFISADVRVH
LLVCFASVNQSTRLPASALHKQPDAVQVVEFIFFIMLPPALQRRGHRSKK
KTDKGMQPYTKPTS*
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mRNA from alignment at E-fasciculatus_F_contig1118:392..1062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1118.934.1 ID=mRNA_E-fasciculatus_F_contig1118.934.1|Name=mRNA_E-fasciculatus_F_contig1118.934.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=671bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1118:392..1062+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACCCCCAGAATTTGTTTGATGGCAACTTACGCGGACGTAAACGCCCGC
TCACGGGGTCCCAGATCATAGGCTTTGTCGGACACTGGCGAATTGTCATT
GGTCAGCCGGTTATCGCGGTCGATGCTAGTAAGCACACAAAGGCGTGTCG
AACGAAGAAACGTCGATGCTGTTGCCGTGCCAAGTGGGTGCCATGAACTC
TGGCGAAAATAAAAGCTGTAACAATTGGCGGACACGTGCGCATGTAAACG
CGCTTCTTCGTGACCAGGTGCCGCAACAGGTCATACGCAGATGTTGCGGC
ACCTAGTCACAAAGCGCGTACGCATGCGCACGTGTCCGCACGCGCTGTTA
CAGCTGTCATTTTTGCCAGACAGGTCATATACAGCTGCCGTGGGCCAGAG
CAAGTGCTCAGGTTTCATCTCCGCGGACGTACGTGTACACCTGCTGGTGT
GCTTTGCATCGGTCAACCAGTCAACACGACTGCCGGCCTCGGCCCTGCAC
AAACAGCCGGACGCCGTGCAAGTTGTTGAGTTTATATTTTTTATCATGCT
CCCACCAGCACTCCAAAGGAGAGGACACCGCTCCAAGAAGAAGACCGACA
AAGGTATGCAACCCTACACCAAACCTACATCCTAGAACAGGTTGGAACCC
GCCACATGAGCAATTTGGCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1118:392..1062+

>mRNA_E-fasciculatus_F_contig1118.934.1 ID=mRNA_E-fasciculatus_F_contig1118.934.1|Name=mRNA_E-fasciculatus_F_contig1118.934.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1118:392..1062+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGCGGCACCTAGTCACAAAGCGCGTACGCATGCGCACGTGTCCGCA
CGCGCTGTTACAGCTGTCATTTTTGCCAGACAGGTCATATACAGCTGCCG
TGGGCCAGAGCAAGTGCTCAGGTTTCATCTCCGCGGACGTACGTGTACAC
CTGCTGGTGTGCTTTGCATCGGTCAACCAGTCAACACGACTGCCGGCCTC
GGCCCTGCACAAACAGCCGGACGCCGTGCAAGTTGTTGAGTTTATATTTT
TTATCATGCTCCCACCAGCACTCCAAAGGAGAGGACACCGCTCCAAGAAG
AAGACCGACAAAGGTATGCAACCCTACACCAAACCTACATCCTAGATGTT
GCGGCACCTAGTCACAAAGCGCGTACGCATGCGCACGTGTCCGCACGCGC
TGTTACAGCTGTCATTTTTGCCAGACAGGTCATATACAGCTGCCGTGGGC
CAGAGCAAGTGCTCAGGTTTCATCTCCGCGGACGTACGTGTACACCTGCT
GGTGTGCTTTGCATCGGTCAACCAGTCAACACGACTGCCGGCCTCGGCCC
TGCACAAACAGCCGGACGCCGTGCAAGTTGTTGAGTTTATATTTTTTATC
ATGCTCCCACCAGCACTCCAAAGGAGAGGACACCGCTCCAAGAAGAAGAC
CGACAAAGGTATGCAACCCTACACCAAACCTACATCCTAG
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