mRNA_E-fasciculatus_F_contig11170.930.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11170.930.1 vs. uniprot
Match: D7FUH5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH5_ECTSI) HSP 1 Score: 140 bits (352), Expect = 6.140e-37 Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1
Query: 1 MASTDRNALIALFESTRGAEWRIRDNWGTSEALGTWYGVDVDAGGRVIKLSLYNNNLEGSLPPQLGDLGALQHLA 225
MASTDRNALIALF++TRGAEWR DNWGTSE LGTWYGVDV+A GRV+KLSLYNNNL+GSLPPQLG+LGALQHLA
Sbjct: 1 MASTDRNALIALFQATRGAEWRKSDNWGTSEGLGTWYGVDVNAEGRVVKLSLYNNNLQGSLPPQLGNLGALQHLA 75
BLAST of mRNA_E-fasciculatus_F_contig11170.930.1 vs. uniprot
Match: D7G3R3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R3_ECTSI) HSP 1 Score: 124 bits (312), Expect = 9.470e-30 Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 1
Query: 1 MASTDRNALIALFESTRGAEWRIRDNWGTSEALGTWYGVDVDAGGRVIKLSLYNNNLEGSLPPQLGDLGALQHLA 225
MAS DR+ALI LF TRGA WR + NWGTSE LGTWYGVDV+A GRV+KLSLYNNNL+G LPP+LG LGAL+HLA
Sbjct: 282 MASADRDALITLFHETRGANWREKGNWGTSEVLGTWYGVDVNAEGRVVKLSLYNNNLQGLLPPELGKLGALEHLA 356
BLAST of mRNA_E-fasciculatus_F_contig11170.930.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.000e-21 Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 7 STDRNALIALFESTRGAEWRIRDNWGTSEALGTWYGVDVDAGGRVIKLSLYNNNLEGSLPPQLGDLGALQHLALG 231
STDR AL+ALF +T GA W+ W T LG WYGV+V+ GRV+KLSL NNL+G +P QLGDLGAL L LG
Sbjct: 10 STDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKGHIPRQLGDLGALMTLNLG 84
BLAST of mRNA_E-fasciculatus_F_contig11170.930.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 2.470e-19 Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 1 MASTDRNALIALFESTRGAEWRIRDNWGTSEALGTWYGVDVDAGGRVIKLSLYNNNLEGSLPPQLGDLGALQHLAL 228
MA DR AL+AL+ +T GA+W + NW T AL WYGV+VD+ GRV+ LSL NNL+G++PP+LG L ALQ L L
Sbjct: 96 MAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQGTIPPELGQLTALQFLHL 171
BLAST of mRNA_E-fasciculatus_F_contig11170.930.1 vs. uniprot
Match: D7FXI0_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI0_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 6.130e-19 Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 1 MASTDRNALIALFESTRGAEWRIRDNWGTSEALGTWYGVDVDAGGRVIKLSLYNNNLEGSLPPQLGDL 204
M+STDR ALIALF ST GA W RDNW T LGTW+GV V+ GRV+ LSL NNL+G +P QLGDL
Sbjct: 1 MSSTDREALIALFRSTGGAGWMRRDNWDTDAVLGTWHGVKVNDQGRVVMLSLDQNNLQGHIPRQLGDL 68
BLAST of mRNA_E-fasciculatus_F_contig11170.930.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 6.590e-19 Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 1 MASTDRNALIALFESTRGAEWRIRDNWGTSEALGTWYGVDVDAGGRVIKLSLYNNNLEGSLPPQLGDLGALQHL 222
M STDR AL++LF ST GA W RDNW T L TW GV+V+ GRV+ L L NNL+GS+PP+LG L AL+ L
Sbjct: 1 MVSTDREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVVNLDLQYNNLQGSIPPELGKLAALRAL 74
BLAST of mRNA_E-fasciculatus_F_contig11170.930.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 7.840e-19 Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 1 MASTDRNALIALFESTRGAEWRIRDNWGTSEALGTWYGVDVDAGGRVIKLSLYNNNLEGSLPPQLGDLGALQHL 222
MASTDR AL+ALF ST GA WR R NW T A+ TW+GV+V+A GRV+ LSL N+L G +PP+LG L LQ L
Sbjct: 1 MASTDREALVALFRSTGGAGWRQRGNWDTDAAIATWHGVEVNAQGRVVNLSLGGNSLRGHIPPELGALSELQEL 74
BLAST of mRNA_E-fasciculatus_F_contig11170.930.1 vs. uniprot
Match: D7G496_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G496_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 5.280e-18 Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 1 MASTDRNALIALFESTRGAEWRIRDNWGTSEALGTWYGVDVDAGGRVIKLSLYNNNLEGSLPPQLGDLGALQHLAL 228
MA TDR AL+AL+ +T G +W+ NW TS AL WY V+V++ GRV+KLSL+NNNL+G +P ++G L L++L L
Sbjct: 125 MAQTDRKALVALYNATGGVKWKNNQNWNTSAALSQWYRVEVNSQGRVVKLSLWNNNLQGPIPVEVGRLAVLEYLDL 200
BLAST of mRNA_E-fasciculatus_F_contig11170.930.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 2.100e-17 Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 MASTDRNALIALFESTRGAEWRIRDNWGTSEALGTWYGVDVDAGGRVIKLSLYNNNLEGSLPPQLGDLGALQHLALGA 234
MA TDR+AL+ L+ +T G WR R NW T L TW+GVDV+ GRV+KL L +NNLEG +P LG LG LQ L L +
Sbjct: 1 MAQTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGNLQQLHLSS 78
BLAST of mRNA_E-fasciculatus_F_contig11170.930.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.850e-17 Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 MASTDRNALIALFESTRGAEWRIRDNWGTSEALGTWYGVDVDAGGRVIKLSLYNNNLEGSLPPQLGDLGALQ 216
MA TDR+AL+AL+ +T G WR NW T L TW+GVDV+ GRV+KL L +NNLEG +P LG L LQ
Sbjct: 1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANLQ 72 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11170.930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11170.930.1 >prot_E-fasciculatus_F_contig11170.930.1 ID=prot_E-fasciculatus_F_contig11170.930.1|Name=mRNA_E-fasciculatus_F_contig11170.930.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=250bp MASTDRNALIALFESTRGAEWRIRDNWGTSEALGTWYGVDVDAGGRVIKLback to top mRNA from alignment at E-fasciculatus_F_contig11170:182..4138+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11170.930.1 ID=mRNA_E-fasciculatus_F_contig11170.930.1|Name=mRNA_E-fasciculatus_F_contig11170.930.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3957bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11170:182..4138+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11170:182..4138+ >mRNA_E-fasciculatus_F_contig11170.930.1 ID=mRNA_E-fasciculatus_F_contig11170.930.1|Name=mRNA_E-fasciculatus_F_contig11170.930.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1500bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11170:182..4138+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |