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Homology
BLAST of mRNA_E-fasciculatus_F_contig1117.926.1 vs. uniprot
Match: A0A6H5KJI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI1_9PHAE) HSP 1 Score: 213 bits (541), Expect = 2.900e-62 Identity = 131/159 (82.39%), Postives = 138/159 (86.79%), Query Frame = 1
Query: 64 MSDLKKQRHHKGSGLSPGGFKSGDRSIDGSGGLGNGLGSLPSKEAMASKGLEAKVDMATHGHQSWALTSLGAWRSQSLGASGEGRPAEFVKSRQREAKRAMLGAAXXXXXXXX--PGAAPINATAVVEAGTAAAADCPVPMVVPAKPPEEMGRSDMVVE 534
MSDLKKQRHH+G GLSPG K+GD SIDGS GLGN LGSLPSKEAMASKGLEAKVDMAT+GHQSWALT+LGAWRSQSLGASG G+PA+FVKSRQREAKRAMLG A XXXXXXX PGAAP NAT VVE G AD PV MVVPAKPPEEMGRS MV+E
Sbjct: 1 MSDLKKQRHHRGCGLSPGDLKTGDDSIDGSVGLGNWLGSLPSKEAMASKGLEAKVDMATYGHQSWALTNLGAWRSQSLGASGGGKPADFVKSRQREAKRAMLGTAAXXXXXXXTGPGAAPTNAT-VVEEG----ADRPVLMVVPAKPPEEMGRSAMVIE 154
BLAST of mRNA_E-fasciculatus_F_contig1117.926.1 vs. uniprot
Match: D7FJR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJR6_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 6.560e-21 Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 1
Query: 64 MSDLKKQRHHKGSGLSPGGFKSGDRSIDGSGGLGNGLGSLPSKEAMASKGLEAK 225
MSDLKKQRHHKGSGLSPG KSGD SIDGSGGLGNGLGSLPSKEAMASKGLEAK
Sbjct: 1 MSDLKKQRHHKGSGLSPGDLKSGDNSIDGSGGLGNGLGSLPSKEAMASKGLEAK 54
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-06_010470.1 |
| Exons | 3 |
| Model size | 1925 |
| Cds size | 474 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1117.926.1 >prot_E-fasciculatus_F_contig1117.926.1 ID=prot_E-fasciculatus_F_contig1117.926.1|Name=mRNA_E-fasciculatus_F_contig1117.926.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=158bp
MSDLKKQRHHKGSGLSPGGFKSGDRSIDGSGGLGNGLGSLPSKEAMASKG
LEAKVDMATHGHQSWALTSLGAWRSQSLGASGEGRPAEFVKSRQREAKRA
MLGAAAAAAAAAGPGAAPINATAVVEAGTAAAADCPVPMVVPAKPPEEMG
RSDMVVE* back to topmRNA from alignment at E-fasciculatus_F_contig1117:4088..7469- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1117.926.1 ID=mRNA_E-fasciculatus_F_contig1117.926.1|Name=mRNA_E-fasciculatus_F_contig1117.926.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3382bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1117:4088..7469- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGCAGCTGCTCTGTCAGAGTAAGCTGGGACAGGGAGATCGCTCCGCCC
CATCCCGTACTCCATGTCCGACCTGAAGAAGCAGGTGATGCTGATTGTTT
GGCTCTAAACCCATCGTCTATCGTTTCCGCTGTATTCTATAATAGTAGTC
ATATCTGCTGGTCCTGGGTCCTGGGTGCTCGCTGACTCTTCTCCGATTCA
AACATTCAAAAATGTCGGCCAATTGACAGCAGTAGCACTGCCAGGCATCG
ACGTCGTGTCTTGGTATGTACCTTGACCCCACCGTGCTCACATCAGCACG
ACTTTTTGACAGAATCTTATGTGCACCATTACGTCCAGCTTCATAGACGA
TGATACTCCAATTTTGTCTTAAAATACAAGTACAAACACCGAAATTTCAA
ATTTCATTTTTTGTTTCCACCTCTCCTGCATGGCATCCGGCCTGGTCGAA
AACAACTACAGCGCAAAGCAGTACTTCTACCATCACCATCAAATACTCCC
GTTGTACGTGAAGGTATAATGAATCTAAACCACGAGCACACACCCGATAC
ACCATTGTGTTCAGCAGTAATAAGGTGGCGCAGGTTTGCAGGTTTCCTTG
ATACTTCCTGGGCCTTGTCCGCCACCTCAACTGCTGCTCGCACAGGTCTC
TGCGGGCTGCGGGGATTGTCATGGAAATGCGAGATACAATTAATTGTTCT
AGTCTAGAAAGTCACAGCATTCGTGTTGTGACACAATTTCACGCGTCGGA
CAGATCGTGAGCTAGCTCACGGATGTCCTACAGATCACCATGGAGGAAAC
ATGCACCGGTCACCTATGTCCTACAGATCACCTTGGAGCAAACATACACC
GATCACTTATTTGTGTACAGATCCAAACATACACCGATCACCTATGTGCT
ACAGGTCTTACGGATCACCATGGAGCAAACATTCACCGATCAACTATGTC
CTACAGATCACCTCGGCAACGTACCCCGATCATCTTTGTTCTTCAGATCA
CCTCGGAAAAACTTACACCGACCGCCTACAAGAATGTCCTACCGATCAAC
AGGGACATAAGCACCGCTCAAAAGACCTAGCTCGATCTGTAGGGATCTGA
TCTATCCGACGTGTGAATTTCATCTTTTTTCCTTGTGATAAATCTGTTTG
AGAATGCCAGTCATCTGCATGCCCTCGAGCATCCCGTCCTCATGTGTTCC
CACTTACCTAACCCCCCACCCCGGACGACATATTGTATGAGATGACATCG
CTGAGGATACTGAGATGAACATCCGACGGCATATATTCATGAAAACTGCT
GCTGCGCCCCGGCTTCACGCTTCTCCCTCGATGATATGTGTGCTGGCACA
TGTATGTCGGGTCGACCTTTTTGCGCTCCTTGTCGACAATAGAGACATCA
CAAAGGCAGTGGACTGAGCCCTGGAGGTTTCAAGAGCGGTGACAGAAGTA
TCGACGGAAGCGGGGGGCTCGGCAATGGACTTGGGTCACTCCCATCAAAG
GAGGCCATGGCATCGAAGGGTCTCGAGGCGAAGGTGAGACGCAATGCACA
CAACCCCCCAGCCAACGGATACGTTGTTCTCCGGAGCTCATGTCAATCTC
ACGTACAGCTGTGAAAGCACGGGATCAGAACAAGCCCGACATTTCACTAC
TTTTCCATTCACGCTCTTTCGCAACACAAAAGGTGGACATGGCAACGCAC
GGCCACCAATCTTGGGCGCTTACGAGCCTCGGTGCGTGGCGAAGTCAGTC
GTTAGGCGCGTCCGGCGAGGGCAGACCCGCCGAGTTTGTCAAGAGCAGAC
AGCGCGAGGCCAAGAGGGCGATGCTGGGGGCTGCTGCTGCTGCTGCTGCT
GCTGCTGGCCCTGGCGCAGCACCAATAAATGCAACGGCAGTAGTTGAGGC
GGGGACTGCAGCTGCGGCTGATTGTCCGGTACCCATGGTGGTCCCTGCGA
AGCCGCCAGAAGAGATGGGACGCAGTGACATGGTTGTCGAGTGAAGACAG
GGGAGGTATTACATGTAGATAAAGGCTAGCCCTTTAAAATCGAGTAGTCC
GATGGGTTAGCCTTTCTTTGTCTAGTACGGGGACGGGGTATCGTCGACTG
TAGGGTGGTGGTGCAGAGCGGTAGCTCACAGCGCGGTAGCAGCTTGGCGT
GTGAACGCCCGTCACACCCCCAGATAGACCGCGAATTACATGGGGGTATT
GGAAGATTTTTTGGACTCGAATACCGAGACGAGCTACGTGAATATTGTGT
AAGAGATGGGAGAGGGAGGGGAGAAAGACAGGCGAAACCAACATCAACAA
CTAACCTTGAGTCAAAACGTTACGCTGCTGCTGCGGGAACGTAGCGACGT
CTTGCGAGTTTGAGGCCATCAGTCCTTCCCCATTCGTAACGCACTTTTCA
ACGTTTTTTTCGTGGGGCTTTTCTTCCTCCGAGCGATTTGTCTTGTTTCC
TGTCTGAGTTAAAATGGCGTCGGCCTAACTCCATTATAATAGTTCTTTTA
TGCAAGAAGAGTGGCCCGCATAGGGGCGCTTTTTGTTTTGCAAAAAGCTG
TTTAGAGGGATCGCCTGGGTGTATGTGCACACACGAAAAAAATAACAGTT
TTCATGCTCTGGGGGGTGAAATCGATGCCCGTGCTGGTCGCGGGCTCTTT
CCGCCGGTATTGCTGTAGCGTACAAGAAGTACAGCAGCAGTGGTATTGGT
CGGCGGTCCCTGTACACACGATTTGATTAGTATCTCGTGCGCACCTTCGA
TTCACCGAACGTGCTTTATGTCGAACGAAGGCTGCTTGCAAGAGCTTTCG
AATGAGCCTACAATTGTATTAATAGATATTTTCGTCGCGACAAAACACTT
AACAAGACGTGCCGACTGAAGGCACATCTTACGGTCCAAAAAACGCCGCG
GAATTAAGAGTTATGGAAGTTGGTGGTGTAGCGATGAATTTTGGTGTAGA
AAATAACTTGGATCCTCGTCATTCTCAGGCGAATCCGTCCGTCCACGGAT
GGTGTAAAAGCGTAGAACTTTAACGTTCTCTCTGAGTGTGGTTCCCCATA
GTCTTCTCCGAAATTTCGTGGGGATCATGGGGGCATATATTGGTTGTTTT
ATTATTTGTGGCCCGTTCAAAAGTCATGGAGGGCCAACCAAAAAGGGATC
CTGTACCAATGCCACTGCTGTAGCTCTCCCGGAGTTTAACAATATGTTGG
AGAAATAGACTTGAAGTGTTCGAACTTTTTGTGGGGTGTGGTAGATTTGA
CTCGATCGGGAGAACAGAAGGCTTGTCTGTAGCCAAGTAGTAGGTGGGGT
ATTTCTGACTTTAGAGAGAGAATAAAACAGGCGTGTGTCTCGACGAAAAC
ATACCAGCCGTGAGAAAAAAAAAGAACATGAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1117:4088..7469- >mRNA_E-fasciculatus_F_contig1117.926.1 ID=mRNA_E-fasciculatus_F_contig1117.926.1|Name=mRNA_E-fasciculatus_F_contig1117.926.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=948bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1117:4088..7469- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCGACCTGAAGAAGCAGATGTCCGACCTGAAGAAGCAGAGACATCA
CAAAGGCAGTGGACTGAGCCCTGGAGGTTTCAAGAGCGGTGACAGAAGTA
TCGACGGAAGCGGGGGGCTCGGCAATGGACTTGGGTCACTCCCATCAAAG
GAGGCCATGGCATCGAAGGGTCTCGAGGCGAAGAGACATCACAAAGGCAG
TGGACTGAGCCCTGGAGGTTTCAAGAGCGGTGACAGAAGTATCGACGGAA
GCGGGGGGCTCGGCAATGGACTTGGGTCACTCCCATCAAAGGAGGCCATG
GCATCGAAGGGTCTCGAGGCGAAGGTGGACATGGCAACGCACGGCCACCA
ATCTTGGGCGCTTACGAGCCTCGGTGCGTGGCGAAGTCAGTCGTTAGGCG
CGTCCGGCGAGGGCAGACCCGCCGAGTTTGTCAAGAGCAGACAGCGCGAG
GCCAAGAGGGCGATGCTGGGGGCTGCTGCTGCTGCTGCTGCTGCTGCTGG
CCCTGGCGCAGCACCAATAAATGCAACGGCAGTAGTTGAGGCGGGGACTG
CAGCTGCGGCTGATTGTCCGGTACCCATGGTGGTCCCTGCGAAGCCGCCA
GAAGAGATGGGACGCAGTGACATGGTTGTCGAGTGAGTGGACATGGCAAC
GCACGGCCACCAATCTTGGGCGCTTACGAGCCTCGGTGCGTGGCGAAGTC
AGTCGTTAGGCGCGTCCGGCGAGGGCAGACCCGCCGAGTTTGTCAAGAGC
AGACAGCGCGAGGCCAAGAGGGCGATGCTGGGGGCTGCTGCTGCTGCTGC
TGCTGCTGCTGGCCCTGGCGCAGCACCAATAAATGCAACGGCAGTAGTTG
AGGCGGGGACTGCAGCTGCGGCTGATTGTCCGGTACCCATGGTGGTCCCT
GCGAAGCCGCCAGAAGAGATGGGACGCAGTGACATGGTTGTCGAGTGA back to top
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