|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig1114.908.1 vs. uniprot
Match: D8LPQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPQ1_ECTSI) HSP 1 Score: 225 bits (574), Expect = 4.720e-70 Identity = 130/149 (87.25%), Postives = 134/149 (89.93%), Query Frame = 3
Query: 93 MARKELPQALTLEKFAAGKDGRANAFKKKKQAKKRKLFEKAQLKRQYAKLLKKEAVTARGEHGPEAPRSDGAAVVGKKRRADGLVLTPNRKRXEEAGGRELKXXXEHSDDREKSGEIHQVAEGRKQEQPKPGKWRRPEHRPDPFKAAKA 539
MARKELPQALTLEKFAAGKDGRANAFKKKKQAKKRKLFEKAQLKRQYAKLLKKEAVTARGEHGP+APRSDGAA VGK++RA LVLTPNRK EEA G ELK E SDDR+ SGE QVAEGRKQEQ KPGKWRRPEHRPDPFKAAKA
Sbjct: 1 MARKELPQALTLEKFAAGKDGRANAFKKKKQAKKRKLFEKAQLKRQYAKLLKKEAVTARGEHGPDAPRSDGAAGVGKEKRAGRLVLTPNRKWKEEASGGELKRRRELSDDRQ-SGERQQVAEGRKQEQRKPGKWRRPEHRPDPFKAAKA 148
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1033 |
| Cds size | 639 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1114.908.1 >prot_E-fasciculatus_F_contig1114.908.1 ID=prot_E-fasciculatus_F_contig1114.908.1|Name=mRNA_E-fasciculatus_F_contig1114.908.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=213bp
MARKELPQALTLEKFAAGKDGRANAFKKKKQAKKRKLFEKAQLKRQYAKL
LKKEAVTARGEHGPEAPRSDGAAVVGKKRRADGLVLTPNRKRREEAGGRE
LKRRREHSDDREKSGEIHQVAEGRKQEQPKPGKWRRPEHRPDPFKAAKAT
ADQRRQEAEEKQRNRELKVAEKEGRAKKRRKQHALLSKRTIGGQPVMKNT
MQHLLEKIQSQR* back to topmRNA from alignment at E-fasciculatus_F_contig1114:13576..18248- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1114.908.1 ID=mRNA_E-fasciculatus_F_contig1114.908.1|Name=mRNA_E-fasciculatus_F_contig1114.908.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4673bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1114:13576..18248- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGGCACACAGCAGTAGAGCAGCAGCAGAGCAGTCCTAAAGCCGAAAAGC
AGAAGATCTAACGCAAGCCCGTGATTGACAAGTGCCTGTGATATGGCCCG
AAAAGAGCTGCCGCAAGCCCTTACCCTCGAGAAGTTTGCCGCTGGCAAAG
ACGGTCGAGCTAATGCCTTCAAGAAAAAGAAACAAGGTGAGACAGGGAGC
GAGCCATTGCACTGCTGTAGCGGACTTGCTACCACATGCATAGGCTTTGT
CAATATCCCGCAGAAACATCTCACATCACTTCAAGGGGAGTATTAGTCTT
TTCCTCAACGACATCTGTTGACCAATCCAAGGCGGGTCATGTTAATAGTG
ATTCTTTTTTGGTAAGTTAGCCTGTGACCTGTGACCTGTGACCACGGGAA
TCGGCCATGTGAAGTGTTGAGACTAACAAGTACGGACAGCGACGTTACGA
GTACTGAGTACAGAGATCGGAACGGTTTTGAATGTGAAAGACAACAACAA
CAACAGCAACCACAACAAGGCAATTGACGTCGTTTGGTGCAGATAGTAAC
GGCAGTGGCTCAGGATTGCTCTAAACATCGACATGTGTACGTAATGTGTA
TAATAGTCTAAAGTCTACATGCACACGCGCGTTGCTTCGCCTGATCTTCT
CTTGTTGTATGATCGCAGGAACTACCGCCGTAACATGTGTGGTATTGTAG
TGACAGCAGAGGGCCGTAGCATTGTTCTGACCGAGAGGAGCGCTCTATCG
TGCCCCCCTTGTTATTGCAGCCAAGAAGCGCAAACTGTTCGAGAAGGCCC
AGCTCAAACGACAGTACGCCAAGCTCTTGAAGAAGGAAGCGGTCACGGCA
AGAGGGGAACACGGGCCTGAGGCTCCGCGATCCGATGGTGCGGCTGTTGT
TGGGAAAAAGAGACGTGCAGACGGTTTGGTCCTTACACCCAATCGGAAAC
GGAGAGAAGAGGCGGGTGGAAGGGAACTGAAGCGAAGGCGGGAACATTCG
GATGATCGTGAGAAGAGCGGAGAGATACACCAAGTGGCAGAGGGGCGGAA
GCAGGAGCAACCCAAGCCGGGCAAGTGGAGGAGACCAGAGCACCGACCGG
ATCCCTTCAAAGCCGCTAAGGTGAACGTCATTGTGAATGCCATCCGATCA
CATGCTACGAAGTTGGAAAATAGTACCTCCTAGCACAATTTCACCCAAAT
CTCCCCCAAATTTCGAGGTGAGCTTGGTCCCAGCCCTCGGGGGCACGATC
TCGTGTGCTCTCATTTTTCTGGGGCACTCCAAGGCGTTACGACAAGGAGA
TCGTTCGGGGGGCCACCCAAGAGAGACCTTCTGGACAGCACTCTGCTCGT
GGGCCTTGTGCAGCACATCGCAGCTCTCTGAAACCGTTTTAGAAGAAGTA
ATATTTTCCAACAGTTGGAAGAACAACTGCCAAAAAACGGACTTGCCGCA
TATGTTTTGTGGGCCGAGGAGAGAACGTAGCCACTCAGCTAGACACGTAC
CTGTTACATAGGTGTAGGATAGGGTCTCCCGAGGTTGCACAATTTTGACT
CAATTTTGACTCGCTTCCCGAGGATCAGCAGAGACATGAACGCTACCAAG
CAAGTTTCAACAGTAGCGGGATCAGCAAGAACAGCACACCGCATAGAAAC
ACCCCCGATTCGTCGAAAGGGAACTCATACATACCGGGAGCCTGAGCTTA
TTGGTGCAGCTCCCCCCAATTACTCACCGACGGCTCTGCCTCCTTTGGTG
CACTAAGGTTTCGTTATATTGGATCGCAACTGCTGCGGGAGATGCTTCAA
AACTCCTGCCGTTCCTATGGGATTTGTCTCTGGGGACATGTGCCTCCATG
TGTTTCTCGAGGACACAAAAAATATTTTCTCTTTTTTGAATACGGGCGAA
GGTGGATGTGAGGGACGTCTATTTCAGTGAAGGCCATGACGATCAGCCAT
CTCATTGATCTTGCCACGAAAGACCTGCAGAAACCAGCTTAGGTGCATTC
TCGCCGCCTGAAAACTGGTATTGAGGAAAACGTTTTGATCCAAATTAGGT
GCCAACGGACGATGGAGCGCCCCAAAACTGCGAAAGCGTTCAAAAGTAGG
CAGAGAGAACGAACCATTTCAACTGCACACCCATAGCACACGGCTCTAGT
GGGCGGCCCAGCCCTAGTGTCGGCCCTTCTGCGTCGACCCGAAACCCCAG
CAGTGGTGTTGAGTTCTGGGCCGTTCTCGAGGGTGCGAATTGGATATAGA
GCAACCTCGTAGATATTCATCCCTGTACAGGGTGACACAAAACGAGAACA
TGTTTGAGTCCTGCCTGCTAGATGTGTTGTGGTTAGTTTCCGCAACCCTT
TCAAGCCTAGGAGGGAGCATTTTGTTTTTTTGTTTTCACGTTTTCACCTC
TATGGTGTCTCGAAGGAACAAGAGAGTGATTTATGCGGCGATGGTTTTGA
AGCTACTCGACATAGAGAAGCGAGTGGTACGAAGCAATATCTGCGGCAAC
ATTAGAGCCACAAGACTTTGATAGTCTTTATGTGAGGGTCATTTCGAGCT
TGACTTCCGCTACAACCACGTCTCCATGAGGACCTGGGCTTCTTCTATAG
ACGACGTGGTCGGAAGGTCTTAAGGTCGTGGTACATTTGATCCGGAGGCG
GGCTTGCTTCCGGTAGATTTAGGTTAGGAGAGAGGCCAAGTATGGAGTAG
GTCGAGCGGGGACTCTACAGGCAGAAATTGAAGCGCAGAAGCGCCATGTT
ACGACGATATTTTTGAAGGGTACGGCACTTCTTGTCGCCGACTGATTATT
AGTGATAGGTTTTGGTACACTGAATACTACATTGTCTGGACGGTAAGCGT
GGTGTGGGTGTGTTTTATCAAGTTTGCTGCATCATCTCTTTCTCCCATAC
TTGTTGTACCATTGCCCTTTACTTGGTTGTTTCTATCCGACTTCGCCTTT
AATTGTTTTCATTCGATCATGTGTATTTTGTGCTGTTGTTGCCACGTGCC
CATTTTCGTCTGCGAACGCGTGTGTGTGCCATCCCATCTGGTCCTGACGT
CAGTCTACTCAATAGACAAGAGTACTTCAGCAGAACATAAGTATTTGGCC
CTCTGTTTCTTTTCGTGCCGAATTTCGATCTGATTGAATGGGTAATGGAG
ATGCCGCCGCCCGACAAACGGGAACGCAGCTTCCGCAGGCGGGTGTGATC
CGGGTGGAAGTGGGCGGGTGTAGGCGGATGCGAGCGCCTTTTCCGAAATT
TCCCACTAGAGGGTGCGAGAAACACCCAGGATGAGGAGCAGGCACAGCAG
TAGCAGCGTCGCACACCACACAGCGTACGGTATAAACCTTCGGCGCTGCC
GTTTCACTTCTTCATCAGCAACAAGAAGTGCTTTCGTAAGGGCATACTAT
TTACATCGTGTGCTACTCGGGCAAATGGTCACGAGAGCCAGTACCGCAAG
ATAACCTATAGATCTGACACTTGAAACCGAAACCACGGACCTGTCGTATT
GCTCGGCGGACTTCCTACCGCCTCTGTGGAGTTCTAATCCTTCACCTTCC
TGGGTGTGTCTGCGCAAGTCATCTGTATCTACCCGTGGGTGTGTCTGCTA
CATGGCGCAAGCCATCTGTAGACGGAGAGCAACAAAAAAATACAGTAGTA
CGCCGTGGTGCTCTGCTGTTGTGACGTGCTGTTGTCTGCCTCCCGCGGAC
CCATCACCTGGCGCACTAATAAAAGGCAACTATAATAGCGGAAGCAGCAA
TTTTTGTTCACGTAAACATGATAAACGGCACAATGTTTTTACCCTGGATC
ACCCGCAGAGTTCCCTTGCGTGTTTTTGGTTCTCTTTGGTGTGCCTGGAC
CCGCACACTCGGGTGAGCCGGTTTTTTATTGGACGCACCAGCGGGTGACG
CCGGAGTCGTTGTTATCCACCTCTTTGGGTGTTGCGTAGTACATACATTT
CATCTCGCGATTGTTGTAGCCACGACATGAGGCTGAGCTCAGTTCAATGT
AAAGTTTATAGGCGTGCCGGTGGTGAAATGTTTTGCCGTGGCTCAAAAAA
GAGTTCTTCTGTTGCATTAGTTGACGAATTTTGCAAACTTCCTTGCGAGA
GCGAGAGAATCGCAAGCATACAACGCTTACGTTCATGGTGTGGCCGTCTA
CTCACTCGTGTCCTTTCCGTTCGTAGGCAACAGCTGACCAACGGAGGCAG
GAGGCAGAAGAAAAGCAGCGGAACAGAGAGTTGAAAGTGGCGGAGAAGGA
AGGCCGAGCCAAGAAAAGGAGAAAGCAACACGCGTTGTTGTCCAAACGCA
CAATAGGGGGGCAACCGGTGATGAAAAACACAATGCAGCACCTTTTGGAG
AAGATTCAATCACAGCGATGAGATCAAGCAGCTGTCGAGCAAATCGGTTC
TCAGGACGCGCGTGTACTTGAAGTTTTCTTAGACTGATCAATACAGGGAG
TAGGTTAGATCGGCCGGTGGGCGCTTGCGTAAAAATATTTTCGGTGATCT
ACAGAATGTCACAGCGGGACATGATCAGTATCGTAGTAGAACCGGTAGGG
CAATAGGTTACGTCATGGTGCACAGAGTGATTTGACGGAAGGACGTCGGT
CGCAGAAGGGAATGAGTATGGGTAGGCGTACTCAAAAGACTTTGTCCAAG
ATATGGTTGTCACACGAAGAGAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1114:13576..18248- >mRNA_E-fasciculatus_F_contig1114.908.1 ID=mRNA_E-fasciculatus_F_contig1114.908.1|Name=mRNA_E-fasciculatus_F_contig1114.908.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1278bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1114:13576..18248- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCCGAAAAGAGCTGCCGCAAGCCCTTACCCTCGAGAAGTTTGCCGC
TGGCAAAGACGGTCGAGCTAATGCCTTCAAGAAAAAGAAACAAGATGGCC
CGAAAAGAGCTGCCGCAAGCCCTTACCCTCGAGAAGTTTGCCGCTGGCAA
AGACGGTCGAGCTAATGCCTTCAAGAAAAAGAAACAAGCCAAGAAGCGCA
AACTGTTCGAGAAGGCCCAGCTCAAACGACAGTACGCCAAGCTCTTGAAG
AAGGAAGCGGTCACGGCAAGAGGGGAACACGGGCCTGAGGCTCCGCGATC
CGATGGTGCGGCTGTTGTTGGGAAAAAGAGACGTGCAGACGGTTTGGTCC
TTACACCCAATCGGAAACGGAGAGAAGAGGCGGGTGGAAGGGAACTGAAG
CGAAGGCGGGAACATTCGGATGATCGTGAGAAGAGCGGAGAGATACACCA
AGTGGCAGAGGGGCGGAAGCAGGAGCAACCCAAGCCGGGCAAGTGGAGGA
GACCAGAGCACCGACCGGATCCCTTCAAAGCCGCTAAGCCAAGAAGCGCA
AACTGTTCGAGAAGGCCCAGCTCAAACGACAGTACGCCAAGCTCTTGAAG
AAGGAAGCGGTCACGGCAAGAGGGGAACACGGGCCTGAGGCTCCGCGATC
CGATGGTGCGGCTGTTGTTGGGAAAAAGAGACGTGCAGACGGTTTGGTCC
TTACACCCAATCGGAAACGGAGAGAAGAGGCGGGTGGAAGGGAACTGAAG
CGAAGGCGGGAACATTCGGATGATCGTGAGAAGAGCGGAGAGATACACCA
AGTGGCAGAGGGGCGGAAGCAGGAGCAACCCAAGCCGGGCAAGTGGAGGA
GACCAGAGCACCGACCGGATCCCTTCAAAGCCGCTAAGGCAACAGCTGAC
CAACGGAGGCAGGAGGCAGAAGAAAAGCAGCGGAACAGAGAGTTGAAAGT
GGCGGAGAAGGAAGGCCGAGCCAAGAAAAGGAGAAAGCAACACGCGTTGT
TGTCCAAACGCACAATAGGGGGGCAACCGGTGATGAAAAACACAATGCAG
CACCTTTTGGAGAAGATTCAATCACAGCGATGAGCAACAGCTGACCAACG
GAGGCAGGAGGCAGAAGAAAAGCAGCGGAACAGAGAGTTGAAAGTGGCGG
AGAAGGAAGGCCGAGCCAAGAAAAGGAGAAAGCAACACGCGTTGTTGTCC
AAACGCACAATAGGGGGGCAACCGGTGATGAAAAACACAATGCAGCACCT
TTTGGAGAAGATTCAATCACAGCGATGA back to top
|