mRNA_E-fasciculatus_F_contig11128.896.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11128.896.1
Unique NamemRNA_E-fasciculatus_F_contig11128.896.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig11128.896.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 2.610e-103
Identity = 172/274 (62.77%), Postives = 199/274 (72.63%), Query Frame = 1
Query:   10 KREMGIFVKTHTGKTIMIGAFPSETVLDIKEKLKXXXXXXSEGKGCLHHQRLLYAGMLLEDGRTLRHYNIQSAATLQSFLPLRGGKPVILLYPPAPVDATVTLELKPLWSFSALYPK-PPSNKLQQAGPHP-----------KCKWHVHASPDGSLEDLSTGREYPYLFWEADSSDGRVSRSFGLDDTRSFCVAGDAAGRYVPDWLCVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKTARLTIAPAPDVTIRVFMAFR 795
            + E+   +KT TGK   I AFPSETVLD+K+K++      ++G  C   QR++YAG    D RTLR  NI++ +     L LR  KPVILLYPPAPVD TV +EL PLWSFS+LYPK  P N  Q A  +            +CKW+VHASP GSL+DLSTGREYPYLFWEADSSDGRV+RSFGLD +RSFCVAG+AAG        VFLD ALERLGLN+RERCDMVT WLPQLESS FN+IYFV+VERYE+ ARLTI P PDVTIRVFMAFR
Sbjct:  155 ENEISFSIKTLTGKQHTIRAFPSETVLDVKKKVQD-----TQGIPC-EQQRIIYAGQQTSDDRTLRDCNIRNGSVAHLVLSLR--KPVILLYPPAPVDITVAVELSPLWSFSSLYPKLQPRNLKQLAADYEAGSQANVAGGQQCKWNVHASPGGSLKDLSTGREYPYLFWEADSSDGRVTRSFGLDGSRSFCVAGEAAG--------VFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFR 412          
BLAST of mRNA_E-fasciculatus_F_contig11128.896.1 vs. uniprot
Match: A0A8H8JUU4_9AGAM (Ubiquitin family protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JUU4_9AGAM)

HSP 1 Score: 177 bits (450), Expect = 1.720e-49
Identity = 113/273 (41.39%), Postives = 142/273 (52.01%), Query Frame = 1
Query:   19 MGIFVKTHTGKTIMIGAFPSETVLDIKEKLKXXXXXXSEGKGCLHHQRLLYAGMLLEDGRTLRHYNIQSAATLQSFLPLRGGKPVILLYPPAPV-DATVTLELKPLWSFSALYPKPPSNKLQQAGPHPKCKWHVHASPDGSLEDLSTGREYPYLFWEADSSDGR------------VSRSFGLDDTRSFCVAGDAAGRYVP-DWLCVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKTARLTIAPAPDVTIRVFMAFR 795
            M +FVKT TGKTI + A+ S+T+  IK K++       +       QRL++AG  LEDG  L  YNIQ  +TL   L LRGGKPVI L+PP P  D  + L L   W FS LYP  P+   + A       W V A PD +L D +TGRE  YLFWEA S+               V   F  D  R      D+    +P D +  ++D AL  LGL+   RC  +TYWLP L+   +  + F+    YE  ARL I P PDVT RVFM FR
Sbjct:  120 MTLFVKTLTGKTITVYAYRSDTIDCIKAKIQDREGIPPD------QQRLIFAGKQLEDGLMLIDYNIQDNSTLHLVLRLRGGKPVIYLFPPIPTSDIRIELALTKRWGFSVLYP--PAAISRTADDGQSVLWTVDAKPDSTLFDRATGREVSYLFWEAHSNSTELPSPACTRACTPVEDIFPFDPARPSLTPADSV--VLPLDKVTEYIDDALLSLGLHTEARCSFITYWLPDLQRHQYIALRFLPQPDYEAAARLNITPIPDVTTRVFMLFR 382          
BLAST of mRNA_E-fasciculatus_F_contig11128.896.1 vs. uniprot
Match: A0A8H8MML9_9AGAM (Ubiquitin family protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MML9_9AGAM)

HSP 1 Score: 171 bits (434), Expect = 2.190e-48
Identity = 108/273 (39.56%), Postives = 142/273 (52.01%), Query Frame = 1
Query:   19 MGIFVKTHTGKTIMIGAFPSETVLDIKEKLKXXXXXXSEGKGCLHHQRLLYAGMLLEDGRTLRHYNIQSAATLQSFLPLRGGKPVILLYPPAPVDAT-VTLELKPLWSFSALYPKPPSNKLQQAGPHPKCKWHVHASPDGSLEDLSTGREYPYLFWEADSSDG-----RVSR--------SFGLDDTRSFCVAGDAAGRYVPDWLCVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKTARLTIAPAPDVTIRVFMAFR 795
            M + VKT TGKTI +    S+TV ++K K++       E       QRL++AG  +EDGRTL  YNI    T+     LRGGKPV+ L+PP P ++  V L L P WSFSALYP  P      AG      W V A PDG+L D  TGRE  YLFWEA ++        VSR        +   D +R   +  D +     + +  ++D  L  LGL+   RC  +TYWLP L+      + F+    YE  A + + P+PDVT RVFM FR
Sbjct:    1 MQLIVKTLTGKTIWVEVETSDTVDNVKAKIQDKEGILPEV------QRLIFAGKQMEDGRTLSDYNILKQRTIHVVTRLRGGKPVVYLFPPLPTNSIRVDLALTPAWSFSALYPSAPVRPT--AGDGHSVAWIVDAKPDGTLSDHGTGREVSYLFWEAHTNPALPCSPAVSRPGSPVQEVAATFDPSRPV-ITPDNSTVLPFEKVTGYIDDVLLSLGLHTEARCSFITYWLPDLQRHKHIALRFLPQSEYEAAAPMRVTPSPDVTTRVFMLFR 264          
BLAST of mRNA_E-fasciculatus_F_contig11128.896.1 vs. uniprot
Match: A0A8H8MJY2_9AGAM (Ubiquitin family protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MJY2_9AGAM)

HSP 1 Score: 171 bits (434), Expect = 2.190e-48
Identity = 107/273 (39.19%), Postives = 142/273 (52.01%), Query Frame = 1
Query:   19 MGIFVKTHTGKTIMIGAFPSETVLDIKEKLKXXXXXXSEGKGCLHHQRLLYAGMLLEDGRTLRHYNIQSAATLQSFLPLRGGKPVILLYPPAPVD-ATVTLELKPLWSFSALYPKPPSNKLQQAGPHPKCKWHVHASPDGSLEDLSTGREYPYLFWEADSSDG-----RVSR--------SFGLDDTRSFCVAGDAAGRYVPDWLCVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKTARLTIAPAPDVTIRVFMAFR 795
            M ++VKT TGK   I    S+T+ ++K K++       +       QRLL+AG  +EDGRTL  YNIQ  +T+     LRGGKPV+ L+PP P +   + L L P WSFSALYP  P      AG      W V A PDG+L D  TGRE  YLFWEA ++        VSR        +   D +R   +  D +     D +  ++D  L  LGL+   RC  +TYWLP L+      + F+    YE  A + + P+PDVT RVFM FR
Sbjct:    1 MQLYVKTLTGKKTTIEVESSDTIDNVKAKIQDKDGVPPD------QQRLLFAGKQMEDGRTLSDYNIQRESTVILVYRLRGGKPVVYLFPPLPTNNVRIDLALTPAWSFSALYPSVPVRPT--AGDGQSVAWIVDAKPDGTLSDHGTGREVSYLFWEAHTNPALPCSPAVSRPGSPVQEVASTFDPSRPV-ITPDNSTVLPFDKVTGYIDDVLLSLGLHTEARCSFITYWLPDLQRHKHIALRFLPQSEYEAAAPMRVTPSPDVTTRVFMLFR 264          
BLAST of mRNA_E-fasciculatus_F_contig11128.896.1 vs. uniprot
Match: A0A8H8J338_9AGAM (Ubiquitin family protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8J338_9AGAM)

HSP 1 Score: 170 bits (430), Expect = 8.640e-48
Identity = 106/274 (38.69%), Postives = 142/274 (51.82%), Query Frame = 1
Query:   19 MGIFVKTHTGKTIMIGAFPSETVLDIKEKLKXXXXXXSEGKGCLHHQRLLYAGMLLEDGRTLRHYNIQSAATLQSFLPLRGGKPVILLYPPAPVDAT-VTLELKPLWSFSALYPKPPSNKLQQAGPHPKCKWHVHASPDGSLEDLSTGREYPYLFWEADSSDG-----RVSR--------SFGLDDTRSFCVAGDAAGRYVP-DWLCVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKTARLTIAPAPDVTIRVFMAFR 795
            M ++VKT TGKTI +    S+T+ ++K K++       E       QRL++AG  +ED  TL  YNIQ   T+     LRGGKPV+ L+PP P +   V L L P WSFSALYP   ++    AG      W V A PDG+L D  TGRE  YLFWEA ++        VSR        +   D +R      ++    +P D    ++D  L  LGL+   RC  +TYWLP L+      + F+    YE  A + + P+PDVT RVFM FR
Sbjct:    1 MQVYVKTLTGKTITLEVESSDTIANVKAKIQDKEGYPPE------QQRLMFAGKQIEDDCTLGDYNIQKEYTIHFVSTLRGGKPVVYLFPPLPTNRIRVDLALAPAWSFSALYPS--ASVRPTAGGGQSVAWIVDAKPDGTLSDRGTGREVSYLFWEAHTNPALPCSPAVSRPGSPVQEVAATFDPSRPVITPDNST--VIPFDKATGYIDDVLLSLGLHTEARCSFITYWLPDLQRHKHIALRFLPQSEYEAAAPMRVTPSPDVTTRVFMLFR 264          
BLAST of mRNA_E-fasciculatus_F_contig11128.896.1 vs. uniprot
Match: A0A2H3CQT3_ARMGA (Ubiquitin-domain-containing protein n=1 Tax=Armillaria gallica TaxID=47427 RepID=A0A2H3CQT3_ARMGA)

HSP 1 Score: 160 bits (406), Expect = 2.250e-43
Identity = 104/286 (36.36%), Postives = 145/286 (50.70%), Query Frame = 1
Query:    7 PKREMGIFVKTHTGKTI-MIGAFPSETVLD-IKEKLKXXXXXXSEGKGCLHHQRLLYAGMLLEDGRTLRHYNIQSAATLQSFLPLRGGKPVILLYPPAPVDATVTLELKPLWSFSALYPKPPSNKLQQAGPHPKCKWHVHASPDGSLEDLSTGREYPYLFWEADSS----------------DGRVSRSF-----GLDDTRSFCVAGDAAGRYVPDWLCVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKTARLTIAPAPDVTIRVFMAFR 795
            P R M I VKT TGKTI ++G   + T +D +K  ++       +       QRL++AG  LEDGR+L  Y I + AT+   L LRG KPVI L+ P P++ATV L L   WSFSA+YP  P  K  ++G     +W+V+   D ++ D+++G    YLFWEA+++                D  +   F     GL DT S  +       Y        LD+AL  LGL++  R   +TYWLP +    F  + F+    YE  A L + P PDV  RVFM F+
Sbjct:   74 PSRPMTIHVKTLTGKTITIVGGLETSTTIDSVKTMVQDREGIPPD------QQRLIFAGKQLEDGRSLSDYGIGNGATIDLVLRLRGDKPVIYLFAPVPLNATVRLSLVKAWSFSAIYPGVPI-KSSESGQ--SIEWNVNIHEDHTMTDIASGARVSYLFWEAETNPGLPLSPPSSPRLGPADSDIISPFDPSMPGLTDTNSVVLPASKTALY--------LDKALIALGLHIEARTSFITYWLPSILKHDFVALRFLPQASYEHAALLNVEPKPDVVTRVFMLFK 342          
BLAST of mRNA_E-fasciculatus_F_contig11128.896.1 vs. uniprot
Match: A0A0D7AXK4_9AGAR (Ubiquitin-like domain-containing protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7AXK4_9AGAR)

HSP 1 Score: 160 bits (404), Expect = 6.300e-43
Identity = 103/281 (36.65%), Postives = 142/281 (50.53%), Query Frame = 1
Query:    1 RSPKREMGIFVKTHTGKTIMIGAFPSETVLDIKEKLKXXXXXXSEGKGCLHHQRLLYAGMLLEDGRTLRHYNIQSAATLQSFLPLRGGKPVILLYPPAPVDATVTLELKPLWSFSALYPKPPSNKLQQAGPHPKCKWHVHASPDGSLEDLSTGREYPYLFWEA--------DSSDGRVS------RSFGLDDTR--SFCVAGDAAGRYVPDWLCVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKTARLTIAPAPDVTIRVFMAFR 795
            R P + + I+V+T TG    +    + TV D+K  ++           C    +LL  G  L + ++LR Y I S +T+     LRGGKPVI L  P  +DATV + L   WSFSALYP  PS   +         W+V   PDG L+++ +G E PYLFWEA         + DG++S       S G +  R  S   A       + D    +LDRAL+ LGLN+  R   +TYWLP        ++ FV ++ YEK A L ++PAPDV  RVFM F+
Sbjct:   92 RRPTKTLVIYVETLTGGRYTLNVASTSTVYDVKLAVESILDE------CTDDHKLLLDGSQLIESQSLRSYGIDSESTVLLVPTLRGGKPVIYLTSPIQIDATVRVSLTKDWSFSALYPVVPSVPSRSGE---SATWNVQVRPDGVLQEIDSGTEVPYLFWEALTNTASISTTEDGQMSPPPSPLMSNGFNPCRANSLFSAQTCVALTIKD-TPQYLDRALKDLGLNIEARASFITYWLPSFLKHENILLTFVSMDAYEKAAPLDVSPAPDVVTRVFMVFK 362          
BLAST of mRNA_E-fasciculatus_F_contig11128.896.1 vs. uniprot
Match: A0A5C2S7E1_9APHY (Ubiquitin-domain-containing protein n=2 Tax=Lentinus tigrinus TaxID=5365 RepID=A0A5C2S7E1_9APHY)

HSP 1 Score: 158 bits (400), Expect = 2.480e-42
Identity = 109/281 (38.79%), Postives = 139/281 (49.47%), Query Frame = 1
Query:    1 RSPKREMGIFVKTHTGKTIMIGAFPSETVLDIKEKLKXXXXXXSEGKGCLHHQRLLYAGMLLEDGRTLRHYNI-QSAATLQSFLPLRGGKPVILLYPPAPV-DATVTLELKPLWSFSALYPKPPSNKLQQAGPHPKCKWHVHASPDGSLEDLSTGREYPYLFWEADSS-------------DGRVSRSFGLDDTRSFCVAGDAAGRYVP-DWLCVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKTARLTIAPAPDVTIRVFMAFR 795
            R   R + I V T TGKTI+I   P  TV  +K  +        +       QRL++AG  LED  TL HY I  S+  +   L LRGGKPVI L+PP+PV  ATV++ L P W+FS +YP P   KL          W V A+P+GSL D  TG E  YLFWEA S              D   S +   D +      G      +P   L  +LD  L+ L L+   R D +TYWLP L    +  + F+    YE+ A+L + PAPDV  RVFM FR
Sbjct:   89 RQQYRNIDILVVTLTGKTIIIKINPRTTVRILKSYICDKEGIPED------QQRLIFAGRQLEDDHTLSHYGIVYSSVIVHLVLRLRGGKPVIYLFPPSPVAHATVSIRLVPQWTFSHIYP-PCDIKLLNDDLGQSITWSVFANPNGSLSDNRTGVELSYLFWEALSKSSIQTTPPLTPAVDASYSTTEHFDPSLPSLKPGHPTVVLLPFATLLPYLDTVLKSLTLHTSARNDFITYWLPALSRKPYVALRFLPQATYERAAQLEVTPAPDVVTRVFMLFR 362          
BLAST of mRNA_E-fasciculatus_F_contig11128.896.1 vs. uniprot
Match: A0A4Y7TAI2_9AGAR (Ubiquitin-like domain-containing protein n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7TAI2_9AGAR)

HSP 1 Score: 157 bits (397), Expect = 5.140e-42
Identity = 97/280 (34.64%), Postives = 148/280 (52.86%), Query Frame = 1
Query:   13 REMGIFVKTHTGKTIMIGAFPSETVLDIKEKLKXXXXXXSEGKGCLHHQRLLYAGMLLEDGRTLRHYNIQSAATLQSFLPLRGGKPVILLYPPA--PVDATVTLELKPLWSFSALYPKPPSNKLQQAGPHPKCKWHVHASPDGSLEDLSTGREYPYLFWEADSSDGRVSRSFGL--DDTRSFCVAGDAAGRYVPDW---------------LCVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKTARLTIAPAPDVTIRVFMAFR 795
            +E+ I+VK  TG  + I A+PS+T+ + K K++      ++       QRL++AG  LEDGR L  Y +++   L   + LRGGKPVI ++PP+   V+A+V L L P W FS +YP   ++  +  G     +W+V AS DG L + +TG E  YLFWEA++   R+S         T  +         ++P+                +  +LD+AL+ LGL+   R   +TYWLP L    +  + F+    YEK A L ++PAPDV  R+FM F+
Sbjct:   76 KEITIWVKRDTGAIVDIKAYPSDTIDNFKAKIQDREGIPAD------QQRLIFAGKQLEDGRLLSDYGLRNEDVLYLVIRLRGGKPVIYVFPPSGSEVNASVKLSLVPEWEFSVIYPIVSASITKVGGQ--TLEWNVKASSDGVLLEKNTGLEVSYLFWEAEALK-RLSEPISPLPSPTSKYASLESVPETFIPNQPHINATNSIVLEVSKMTPYLDKALKELGLHTEARTSFITYWLPALLKHKYVALRFLPQTVYEKAAPLEVSPAPDVVARIFMLFK 346          
BLAST of mRNA_E-fasciculatus_F_contig11128.896.1 vs. uniprot
Match: A0A8H8J2X5_9AGAM (Ubiquitin family protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8J2X5_9AGAM)

HSP 1 Score: 155 bits (391), Expect = 1.210e-41
Identity = 100/273 (36.63%), Postives = 137/273 (50.18%), Query Frame = 1
Query:   19 MGIFVKTHTGKTIMIGAFPSETVLDIKEKLKXXXXXXSEGKGCLHHQRLLYAGMLLEDGRTLRHYNIQSAATLQSFLPLRGGKPVILLYPPAPVD-ATVTLELKPLWSFSALYPKPPSNKLQQAGPHPKCKWHVHASPDGSLEDLSTGREYPYLFWEADSSDG-----RVSRSFG--------LDDTRSFCVAGDAAGRYVP-DWLCVFLDRALERLGLNMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKTARLTIAPAPDVTIRVFMAF 792
            M +F+KT TGK + +    S+T+ ++K K++       +       QRL++AG  LED  TL  YNI+  +TL     LRGGKPVI L+PPA  +   V L L   W FSALYP  P       G      W V A PDG+L +  TGRE  YLFWEA ++        VSR            D +R      ++    +P + +  ++D  L  LGL+   RC  +TYWLP L+      + F+    YE  A + + P+PDVT RVFM F
Sbjct:   34 MQLFIKTLTGKILTLEVESSDTIDNVKSKIQDKEGMPPD------EQRLIFAGTQLEDRCTLSDYNIKKESTLHLVKRLRGGKPVIYLFPPAAANNIRVDLALTQAWDFSALYPSAPICPTADGGQ--SVAWIVDAKPDGTLFEHGTGREVSYLFWEAHTNPALPCSPAVSRPGSPVQGVVATFDPSRPIITPSNST--LLPFEKVTGYIDDVLLSLGLHTEARCSFITYWLPDLQQHKHIALRFLPQSEYEAAAPMHVTPSPDVTTRVFMLF 296          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11128.896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B4_ECTSI2.610e-10362.77Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A8H8JUU4_9AGAM1.720e-4941.39Ubiquitin family protein n=1 Tax=Ceratobasidium sp... [more]
A0A8H8MML9_9AGAM2.190e-4839.56Ubiquitin family protein n=1 Tax=Ceratobasidium sp... [more]
A0A8H8MJY2_9AGAM2.190e-4839.19Ubiquitin family protein n=1 Tax=Ceratobasidium sp... [more]
A0A8H8J338_9AGAM8.640e-4838.69Ubiquitin family protein n=2 Tax=Ceratobasidium sp... [more]
A0A2H3CQT3_ARMGA2.250e-4336.36Ubiquitin-domain-containing protein n=1 Tax=Armill... [more]
A0A0D7AXK4_9AGAR6.300e-4336.65Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
A0A5C2S7E1_9APHY2.480e-4238.79Ubiquitin-domain-containing protein n=2 Tax=Lentin... [more]
A0A4Y7TAI2_9AGAR5.140e-4234.64Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
A0A8H8J2X5_9AGAM1.210e-4136.63Ubiquitin family protein n=1 Tax=Ceratobasidium sp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11128contigE-fasciculatus_F_contig11128:3082..4396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.5
Seed ortholog evalue2.8e-84
Seed eggNOG ortholog2880.D7G4B4
KEGG koko:K02977,ko:K02983,ko:K08770
KEGG Pathwayko03010,ko03320,map03010,map03320
KEGG ModuleM00177,M00179
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size795
Cds size777
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11128.896.1prot_E-fasciculatus_F_contig11128.896.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11128 3100..4396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927617.6309073-UTR-E-fasciculatus_F_contig11128:3081..30991622927617.6309073-UTR-E-fasciculatus_F_contig11128:3081..3099Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11128 3082..3099 +
1695995621.7041125-UTR-E-fasciculatus_F_contig11128:3081..30991695995621.7041125-UTR-E-fasciculatus_F_contig11128:3081..3099Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11128 3082..3099 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927617.645312-CDS-E-fasciculatus_F_contig11128:3099..34831622927617.645312-CDS-E-fasciculatus_F_contig11128:3099..3483Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11128 3100..3483 +
1695995621.7205732-CDS-E-fasciculatus_F_contig11128:3099..34831695995621.7205732-CDS-E-fasciculatus_F_contig11128:3099..3483Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11128 3100..3483 +
1622927617.6558692-CDS-E-fasciculatus_F_contig11128:3835..40251622927617.6558692-CDS-E-fasciculatus_F_contig11128:3835..4025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11128 3836..4025 +
1695995621.7324133-CDS-E-fasciculatus_F_contig11128:3835..40251695995621.7324133-CDS-E-fasciculatus_F_contig11128:3835..4025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11128 3836..4025 +
1622927617.6697752-CDS-E-fasciculatus_F_contig11128:4193..43961622927617.6697752-CDS-E-fasciculatus_F_contig11128:4193..4396Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11128 4194..4396 +
1695995621.7404523-CDS-E-fasciculatus_F_contig11128:4193..43961695995621.7404523-CDS-E-fasciculatus_F_contig11128:4193..4396Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11128 4194..4396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11128.896.1

>prot_E-fasciculatus_F_contig11128.896.1 ID=prot_E-fasciculatus_F_contig11128.896.1|Name=mRNA_E-fasciculatus_F_contig11128.896.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=259bp
MGIFVKTHTGKTIMIGAFPSETVLDIKEKLKEKIKEKSEGKGCLHHQRLL
YAGMLLEDGRTLRHYNIQSAATLQSFLPLRGGKPVILLYPPAPVDATVTL
ELKPLWSFSALYPKPPSNKLQQAGPHPKCKWHVHASPDGSLEDLSTGREY
PYLFWEADSSDGRVSRSFGLDDTRSFCVAGDAAGRYVPDWLCVFLDRALE
RLGLNMRERCDMVTYWLPQLESSAFNIIYFVDVERYEKTARLTIAPAPDV
TIRVFMAFR
back to top

mRNA from alignment at E-fasciculatus_F_contig11128:3082..4396+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11128.896.1 ID=mRNA_E-fasciculatus_F_contig11128.896.1|Name=mRNA_E-fasciculatus_F_contig11128.896.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1315bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11128:3082..4396+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCTCGCCGAAGAGGGAAATGGGCATCTTCGTCAAGACACACACGGGCAA GACCATCATGATCGGAGCTTTTCCCAGTGAGACGGTGCTGGACATCAAGG AGAAGCTCAAGGAGAAGATCAAGGAGAAGAGTGAAGGCAAGGGTTGCCTT CACCATCAGCGCCTCTTATACGCAGGCATGCTGTTAGAAGATGGCCGAAC CCTGCGTCACTACAACATTCAGAGCGCGGCCACCCTACAAAGCTTTTTGC CTTTGAGGGGGGGAAAGCCGGTGATCCTCCTGTACCCGCCAGCCCCTGTG GATGCCACTGTCACGCTGGAGCTGAAGCCGCTCTGGAGCTTCTCCGCACT GTACCCGAAACCCCCGTCTAACAAGCTGCAGCAGGCAGGCCCGCACCCCA AGGTCAGTCTCTCGGTGGTGTCATTTGGAACAAGCAGAAAGCAAAACTAG ACGCGCTCAGCGTGCTGTGCTCCAAAATGCGCAGGGATGCATGATTGCCT CTCGACGTGAGATCTCGTACTCTCCGGCGGCGTAAGGCCGCGAGACACTT GTTGCGTTTTACTATCGAAGTATGAATTTTCTCTGTCTAGGACAACTCTT CGTACTTCCTTCTCATCATCGACGACAGGCCTTCTGGTGTGACGCCAATA CCACACGATTGCCTTCATACATTCTGCTTCGCGCCATCAACCCACCCGCA CTCTACTTTCCCGTTGTTACTGGTTTCCAGGTTGTCGTGGCTAGTGGCCA GCAGTGCAAATGGCACGTCCACGCTAGTCCCGACGGGTCTCTTGAAGACC TCAGCACCGGCAGGGAGTACCCGTATCTCTTCTGGGAAGCAGATTCTTCC GACGGCCGAGTTTCGCGGAGCTTTGGGTTGGACGATACGAGGTCGTTTTG CGTGGCAGGCGACGCCGCAGGTAGATACGTTCCTGATTGGCTCTGTCTGC GAACTTCCTACCAATAGATATTCCACGCTTGCGCTTCCAATCTCCTCGTT CGCTGCGGCCGCACACAACGTTTTCGTAGCTGGGTAATCTCATTGTTGAC ATCCGCCATCCCGTTCGGCGCCGTTCCCTACCGACTTTTGCGCGATCGAC GTTCTTCGACAGGCGTGTTCCTCGACCGTGCCCTGGAGCGCCTCGGGCTC AACATGCGGGAGCGCTGCGATATGGTCACCTACTGGCTGCCGCAGCTGGA GTCATCCGCCTTCAACATCATCTACTTCGTGGACGTAGAGCGGTACGAGA AGACCGCCCGTCTGACCATTGCGCCTGCTCCGGACGTCACGATCCGGGTC TTCATGGCCTTCAGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11128:3082..4396+

>mRNA_E-fasciculatus_F_contig11128.896.1 ID=mRNA_E-fasciculatus_F_contig11128.896.1|Name=mRNA_E-fasciculatus_F_contig11128.896.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1554bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11128:3082..4396+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCATCTTCGTCAAGACACACACGGGCAAGACCATCATGATCGGAGC
TTTTCCCAGTGAGACGGTGCTGGACATCAAGGAGAAGCTCAAGGAGAAGA
TCAAGGAGAAGAGTGAAGGCAAGGGTTGCCTTCACCATCAGCGCCTCTTA
TACGCAGGCATGCTGTTAGAAGATGGCCGAACCCTGCGTCACTACAACAT
TCAGAGCGCGGCCACCCTACAAAGCTTTTTGCCTTTGAGGGGGGGAAAGC
CGGTGATCCTCCTGTACCCGCCAGCCCCTGTGGATGCCACTGTCACGCTG
GAGCTGAAGCCGCTCTGGAGCTTCTCCGCACTGTACCCGAAACCCCCGTC
TAACAAGCTGCAGCAGGCAGGCCCGCACCCCAAGATGGGCATCTTCGTCA
AGACACACACGGGCAAGACCATCATGATCGGAGCTTTTCCCAGTGAGACG
GTGCTGGACATCAAGGAGAAGCTCAAGGAGAAGATCAAGGAGAAGAGTGA
AGGCAAGGGTTGCCTTCACCATCAGCGCCTCTTATACGCAGGCATGCTGT
TAGAAGATGGCCGAACCCTGCGTCACTACAACATTCAGAGCGCGGCCACC
CTACAAAGCTTTTTGCCTTTGAGGGGGGGAAAGCCGGTGATCCTCCTGTA
CCCGCCAGCCCCTGTGGATGCCACTGTCACGCTGGAGCTGAAGCCGCTCT
GGAGCTTCTCCGCACTGTACCCGAAACCCCCGTCTAACAAGCTGCAGCAG
GCAGGCCCGCACCCCAAGTGCAAATGGCACGTCCACGCTAGTCCCGACGG
GTCTCTTGAAGACCTCAGCACCGGCAGGGAGTACCCGTATCTCTTCTGGG
AAGCAGATTCTTCCGACGGCCGAGTTTCGCGGAGCTTTGGGTTGGACGAT
ACGAGGTCGTTTTGCGTGGCAGGCGACGCCGCAGGTAGATACGTTCCTGA
TTGGCTCTTGCAAATGGCACGTCCACGCTAGTCCCGACGGGTCTCTTGAA
GACCTCAGCACCGGCAGGGAGTACCCGTATCTCTTCTGGGAAGCAGATTC
TTCCGACGGCCGAGTTTCGCGGAGCTTTGGGTTGGACGATACGAGGTCGT
TTTGCGTGGCAGGCGACGCCGCAGGTAGATACGTTCCTGATTGGCTCTGC
GTGTTCCTCGACCGTGCCCTGGAGCGCCTCGGGCTCAACATGCGGGAGCG
CTGCGATATGGTCACCTACTGGCTGCCGCAGCTGGAGTCATCCGCCTTCA
ACATCATCTACTTCGTGGACGTAGAGCGGTACGAGAAGACCGCCCGTCTG
ACCATTGCGCCTGCTCCGGACGTCACGATCCGGGTCTTCATGGCCTTCAG
GGCGTGTTCCTCGACCGTGCCCTGGAGCGCCTCGGGCTCAACATGCGGGA
GCGCTGCGATATGGTCACCTACTGGCTGCCGCAGCTGGAGTCATCCGCCT
TCAACATCATCTACTTCGTGGACGTAGAGCGGTACGAGAAGACCGCCCGT
CTGACCATTGCGCCTGCTCCGGACGTCACGATCCGGGTCTTCATGGCCTT
CAGG
back to top