mRNA_E-fasciculatus_F_contig11123.895.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11123.895.1
Unique NamemRNA_E-fasciculatus_F_contig11123.895.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig11123.895.1 vs. uniprot
Match: A0A6H5KMF7_9PHAE (Glyco_tran_28_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF7_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.240e-47
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1
Query:   16 SGLGKALVVVVNRALMDNHQEELADALAQRDYLRATTPEGLASSLIELDDSPSARRPYPPAKPEAFAAIVDEEMRAAQDGR 258
            SGLGKALVVVVNRALMDNHQEELADALAQR+YLRATTPEGLA +L+ELDDSPSARRPYPPAKPEAFAAIVDEEMRAAQDGR
Sbjct:    5 SGLGKALVVVVNRALMDNHQEELADALAQRNYLRATTPEGLAGALVELDDSPSARRPYPPAKPEAFAAIVDEEMRAAQDGR 85          
BLAST of mRNA_E-fasciculatus_F_contig11123.895.1 vs. uniprot
Match: D7FSK5_ECTSI (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK5_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 7.360e-46
Identity = 76/80 (95.00%), Postives = 79/80 (98.75%), Query Frame = 1
Query:   19 GLGKALVVVVNRALMDNHQEELADALAQRDYLRATTPEGLASSLIELDDSPSARRPYPPAKPEAFAAIVDEEMRAAQDGR 258
            GLGKALVVVVNRALMDNHQEELADALAQR+YLRATTPEGLA +L+ELDDSPSARRPYPPAKPEAFAAIVDEEMRAAQDGR
Sbjct:   93 GLGKALVVVVNRALMDNHQEELADALAQRNYLRATTPEGLAGALVELDDSPSARRPYPPAKPEAFAAIVDEEMRAAQDGR 172          
BLAST of mRNA_E-fasciculatus_F_contig11123.895.1 vs. uniprot
Match: A0A7R9TAB8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TAB8_9VIRI)

HSP 1 Score: 70.1 bits (170), Expect = 5.620e-13
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   22 LGKALVVVVNRALMDNHQEELADALAQRDYLRATTPEGLASSLIELDDSPSARRPYPPAKPEAFAAIV 225
            L K LVVVVN ALMDNHQ+ELA ALA R YL +TTP  L S+L  LD S  A +PYP   P A A  V
Sbjct:  113 LKKPLVVVVNEALMDNHQQELAGALASRGYLVSTTPARLVSALETLDTS--ALKPYPGGDPAAVAQAV 178          
BLAST of mRNA_E-fasciculatus_F_contig11123.895.1 vs. uniprot
Match: A0A4S4M0F0_9AGAM (UDP-N-acetylglucosamine transferase subunit ALG13 n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4M0F0_9AGAM)

HSP 1 Score: 69.7 bits (169), Expect = 5.940e-13
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   25 GKALVVVVNRALMDNHQEELADALAQRDYLRATTPEGLASSLIELDDSPSARRPYPPAKPEAFAAIVDEEM 237
            GK L++V N  L+DNHQEELADAL+   +L+A+T   L+ +L+E D  PS   P+PP     F+ ++DEEM
Sbjct:   99 GKPLIIVPNPTLLDNHQEELADALSALGHLKASTVSNLSQTLLEFD--PSTLAPFPPFDGSRFSRLLDEEM 167          
BLAST of mRNA_E-fasciculatus_F_contig11123.895.1 vs. uniprot
Match: A0A167L3H1_CALVF (UDP-N-acetylglucosamine transferase subunit ALG13 n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167L3H1_CALVF)

HSP 1 Score: 67.8 bits (164), Expect = 2.930e-12
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   25 GKALVVVVNRALMDNHQEELADALAQRDYLRATTPEGLASSLIELDDSPSARRPYPPAKPEAFAAIVDEEM 237
            GK L+ V N +LMDNHQ ELADALA++ Y+   TPE L  +L+     PS   P+PP     F +I+D+EM
Sbjct:   93 GKPLIAVPNTSLMDNHQAELADALAKQGYIGVATPETLPEALVAF--KPSQLTPFPPFDGSKFLSILDDEM 161          
BLAST of mRNA_E-fasciculatus_F_contig11123.895.1 vs. uniprot
Match: A0A8H4QQX0_9AGAR (UDP-N-acetylglucosamine transferase subunit ALG13 n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4QQX0_9AGAR)

HSP 1 Score: 66.6 bits (161), Expect = 9.550e-12
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   22 LGKALVVVVNRALMDNHQEELADALAQRDYLRATTPEGLASSLIELDDSPSARRPYPPAKPEAFAAIVDE 231
            +GK ++VV N  L+DNHQ ELA AL +  YL+ATT +GLA ++ + D S    +P+PP     FA IVDE
Sbjct:  100 MGKPMIVVPNPTLLDNHQAELASALEEMGYLKATTVDGLAQTIKDFDASKI--KPFPPFNGSRFAKIVDE 167          
BLAST of mRNA_E-fasciculatus_F_contig11123.895.1 vs. uniprot
Match: A0A0L0DB70_THETB (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DB70_THETB)

HSP 1 Score: 66.2 bits (160), Expect = 1.580e-11
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   22 LGKALVVVVNRALMDNHQEELADALAQRDYLRATTPE--GLASSLIELDDSPSARRPYPPAKPEAFAAIVDEEM 237
            +GK +V V N +LM+NHQEELA A+A   Y+    PE   LA++L  L D  +  +P+PP   EAF A++D EM
Sbjct:  104 MGKPMVAVANGSLMNNHQEELAAAMAGAGYVIRAEPEPQSLAAALAALSDGSAELQPFPPPASEAFVAVLDAEM 177          
BLAST of mRNA_E-fasciculatus_F_contig11123.895.1 vs. uniprot
Match: A0A2H3DN98_ARMGA (UDP-N-acetylglucosamine transferase subunit ALG13 n=3 Tax=Armillaria TaxID=47424 RepID=A0A2H3DN98_ARMGA)

HSP 1 Score: 65.1 bits (157), Expect = 3.680e-11
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   22 LGKALVVVVNRALMDNHQEELADALAQRDYLRATTPEGLASSLIELDDSPSARRPYPPAKPEAFAAIVDEEM 237
            LGK L+VV N  L+DNHQEELA+AL +  +LR++T   LA ++   D S   +  +PP  P  F  +VDEEM
Sbjct:  100 LGKPLIVVPNPTLLDNHQEELAEALEELGHLRSSTVSDLAHTIETFDRSAIVK--FPPQDPSRFRRLVDEEM 169          
BLAST of mRNA_E-fasciculatus_F_contig11123.895.1 vs. uniprot
Match: A0A2H3J8S5_WOLCO (UDP-N-acetylglucosamine transferase subunit ALG13 n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3J8S5_WOLCO)

HSP 1 Score: 65.5 bits (158), Expect = 4.200e-11
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   22 LGKALVVVVNRALMDNHQEELADALAQRDYLRATTPEGLASSLIELDDSPSARRPYPPAKPEAFAAIVDEEM 237
            LGK L+VV N +L+DNHQEELA ALA   +L+A T  GL  +++ L D+     P+PP     F  ++DEEM
Sbjct:  121 LGKPLIVVPNPSLLDNHQEELATALASLGHLKAATIAGLPEAIVSLADAKLV--PFPPFNGSRFRELLDEEM 190          
BLAST of mRNA_E-fasciculatus_F_contig11123.895.1 vs. uniprot
Match: V9EYS7_PHYPR (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=11 Tax=Phytophthora TaxID=4783 RepID=V9EYS7_PHYPR)

HSP 1 Score: 64.7 bits (156), Expect = 4.900e-11
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   22 LGKALVVVVNRALMDNHQEELADALAQRDYLRATTPEGLASSLIELDDSPSARRPYPPAKPEAFAAIVDEEMRAAQ 249
            L K LVVVVN ALMDNHQ ELA+A+  + +  ATT +GL  S++E  D  S + PYPP   +AF  +VD  M  A+
Sbjct:   90 LKKMLVVVVNTALMDNHQAELAEAMVDQKFCLATTVQGL-HSVLETGDWNSLQ-PYPPLDEQAFPDLVDAVMGVAE 163          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11123.895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMF7_9PHAE1.240e-4795.06Glyco_tran_28_C domain-containing protein n=1 Tax=... [more]
D7FSK5_ECTSI7.360e-4695.00N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
A0A7R9TAB8_9VIRI5.620e-1360.29Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A4S4M0F0_9AGAM5.940e-1347.89UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
A0A167L3H1_CALVF2.930e-1247.89UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
A0A8H4QQX0_9AGAR9.550e-1248.57UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
A0A0L0DB70_THETB1.580e-1145.95N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
A0A2H3DN98_ARMGA3.680e-1147.22UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
A0A2H3J8S5_WOLCO4.200e-1147.22UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
V9EYS7_PHYPR4.900e-1150.00N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11123contigE-fasciculatus_F_contig11123:30..290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue3.1e-35
Seed eggNOG ortholog2880.D7FSK5
Preferred nameALG13
KEGG koko:K07432,ko:K07441,ko:K10742,ko:K11855,ko:K20045
KEGG ReactionR05970
KEGG Pathwayko00510,ko00513,ko01100,ko03030,map00510,map00513,map01100,map03030
KEGG ModuleM00055
GOsGO:0003674,GO:0003824,GO:0004577,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019898,GO:0031090,GO:0031312,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0042406,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043541,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Glycosyltransferase family 28 C-terminal domain
EggNOG OGsCOG5017@1,KOG3349@2759
EC2.4.1.141,3.4.19.12,3.6.4.12
COG Functional cat.T
CAZyGT1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko01003,ko03032,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927617.5822477-CDS-E-fasciculatus_F_contig11123:29..2901622927617.5822477-CDS-E-fasciculatus_F_contig11123:29..290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11123 30..290 +
1695995621.6880944-CDS-E-fasciculatus_F_contig11123:29..2901695995621.6880944-CDS-E-fasciculatus_F_contig11123:29..290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11123 30..290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11123.895.1prot_E-fasciculatus_F_contig11123.895.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11123 30..290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11123.895.1

>prot_E-fasciculatus_F_contig11123.895.1 ID=prot_E-fasciculatus_F_contig11123.895.1|Name=mRNA_E-fasciculatus_F_contig11123.895.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=87bp
TCRRYSGLGKALVVVVNRALMDNHQEELADALAQRDYLRATTPEGLASSL
IELDDSPSARRPYPPAKPEAFAAIVDEEMRAAQDGR*
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mRNA from alignment at E-fasciculatus_F_contig11123:30..290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11123.895.1 ID=mRNA_E-fasciculatus_F_contig11123.895.1|Name=mRNA_E-fasciculatus_F_contig11123.895.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=261bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11123:30..290+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCTGTCGCCGCTATTCAGGACTGGGCAAGGCCCTCGTAGTTGTCGTGAA TCGTGCACTGATGGACAACCACCAAGAAGAGCTCGCCGATGCGCTGGCGC AGCGTGACTACCTCCGAGCAACCACTCCCGAGGGGCTGGCTAGCTCCCTG ATAGAGCTGGATGATTCTCCCTCAGCTAGGAGACCCTATCCTCCCGCCAA GCCAGAAGCGTTTGCGGCGATTGTGGACGAAGAGATGCGCGCGGCCCAAG ATGGGAGATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11123:30..290+

>mRNA_E-fasciculatus_F_contig11123.895.1 ID=mRNA_E-fasciculatus_F_contig11123.895.1|Name=mRNA_E-fasciculatus_F_contig11123.895.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11123:30..290+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCTGTCGCCGCTATTCAGGACTGGGCAAGGCCCTCGTAGTTGTCGTGAA
TCGTGCACTGATGGACAACCACCAAGAAGAGCTCGCCGATGCGCTGGCGC
AGCGTGACTACCTCCGAGCAACCACTCCCGAGGGGCTGGCTAGCTCCCTG
ATAGAGCTGGATGATTCTCCCTCAGCTAGGAGACCCTATCCTCCCGCCAA
GCCAGAAGCGTTTGCGGCGATTGTGGACGAAGAGATGCGCGCGGCCCAAG
ATGGGAGATAGACCTGTCGCCGCTATTCAGGACTGGGCAAGGCCCTCGTA
GTTGTCGTGAATCGTGCACTGATGGACAACCACCAAGAAGAGCTCGCCGA
TGCGCTGGCGCAGCGTGACTACCTCCGAGCAACCACTCCCGAGGGGCTGG
CTAGCTCCCTGATAGAGCTGGATGATTCTCCCTCAGCTAGGAGACCCTAT
CCTCCCGCCAAGCCAGAAGCGTTTGCGGCGATTGTGGACGAAGAGATGCG
CGCGGCCCAAGATGGGAGATAG
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