mRNA_E-fasciculatus_F_contig11096.875.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11096.875.1
Unique NamemRNA_E-fasciculatus_F_contig11096.875.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11096.875.1 vs. uniprot
Match: D8LCZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ3_ECTSI)

HSP 1 Score: 694 bits (1792), Expect = 1.900e-234
Identity = 438/638 (68.65%), Postives = 445/638 (69.75%), Query Frame = 1 
Query:    1 RTASDVRGQFQTLLRDAGLIPRDREQLAELNRHSEMPKYWPVVRAAMCSGLYPNLVRVDYGKKKFKLLSADHSTLNPHPSSVTSEGNPFNRRWAYYHEMCRTPGGLFIYDLTEAAPLPLLLFGAGQRDPGRPGQLIHKMVTGPHIQGGGKKKKGKKKGFQPPPGAGPFAGVEQWVYFDVGRDLRRPLEDIRSALEYVVGEHVGGARSSERETRLINTVAQAFVGEEERANPTKPGGGHDRSQHHHGTMKAYNVDADDDYEFHRPGHGGSEYR--------------------------------GSGYGAYRGYGDGSSGANVSSSSRGXXXXXXXXXXXXXXXXXXYSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARYAAPQAAPKLGHGSS-MSGGGSSAMSGSAHAGGSFGSYSHYGGVSRGSGGGSGGATPLGP---------------GGGPARYNPSNGDSSGGGGYQXXGRGDPGSVSQPRSLARPGGVASHEFTRGPMRPSTHSPVSTVLGGEYHNYAVPPGSAPLGGGXXXXXXXAGHPQHHYVSRSVPMARGEDSRDRDGHGGRGGKRGRW 1770
            RTASDVRGQFQTLLRDAGLIPRDREQLAELNRHSEMPKYWPVVRAAMCSGLYPNLVRVDYGKKKFKLLSADHSTLNPHPSSVTSEGNPFNRRWAYYHEMCRTPGGLFIYDLTEAAPLPLLLFGAGQRDPGRPGQLIHK+VTGPHIQGGGKKKKGKKKG+Q PP  GPFAGVE WVYFDVGRD+RRPLEDIRSALEYVVGEHVGGARSSERETRLINTVAQAFVGEEE ANP KPGGGHDRSQHHHGTMKAYNVDADD            EY                                   GYG+    G G  G                           YSR XXXXXXXXXXXXXXXXXXXXXXXXXXX                       XXXX                           D RYAAPQAAPKLGH SS MSGGGSS+MSGSAHAGGSFG                                       GGGPARYNPSNG+SSG     XX   DPGSVSQPRSLARPGGVASHEFTRGPMRPSTHSPVSTVLGGEYHNYAVPPGSAPLGGG  XX   AGHPQHHYVSRSVPM+RGEDSRDRDGHGGRGGKRGRW
Sbjct:  746 RTASDVRGQFQTLLRDAGLIPRDREQLAELNRHSEMPKYWPVVRAAMCSGLYPNLVRVDYGKKKFKLLSADHSTLNPHPSSVTSEGNPFNRRWAYYHEMCRTPGGLFIYDLTEAAPLPLLLFGAGQRDPGRPGQLIHKLVTGPHIQGGGKKKKGKKKGYQAPPSVGPFAGVEPWVYFDVGRDVRRPLEDIRSALEYVVGEHVGGARSSERETRLINTVAQAFVGEEELANPPKPGGGHDRSQHHHGTMKAYNVDADDXXXXXXXXXXXXEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGYGSSSAIGSGGHGG--------------------------YSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPPYGSSSGGGDRSGDHRGDSGRXXXXGHYGKSSPPLSEKPPSHSMAGG-----DVRYAAPQAAPKLGHSSSSMSGGGSSSMSGSAHAGGSFGXXXXX-------------XXXXXXXXXXXXXXXXXXXXXGGGPARYNPSNGESSGXXXXXXXXXXDPGSVSQPRSLARPGGVASHEFTRGPMRPSTHSPVSTVLGGEYHNYAVPPGSAPLGGGSGXXEGGAGHPQHHYVSRSVPMSRGEDSRDRDGHGGRGGKRGRW 1339
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BLAST of mRNA_E-fasciculatus_F_contig11096.875.1 vs. uniprot
Match: A0A7S3UW47_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW47_HETAK)

HSP 1 Score: 127 bits (320), Expect = 8.050e-30
Identity = 84/233 (36.05%), Postives = 122/233 (52.36%), Query Frame = 1 
Query:   10 SDVRGQFQTLLRDAGLIPRDREQLAELNRHSEMPKYWPVVRAAMCSGLYPNLVRVDYGKKKFKLLSADHSTLNPHPSSVTSEGNP--FNRRWAYYHEMCRTPGGLFIYDLTEAAPLPLLLFGAGQRDPGRPGQLIHKMVTGPHIQGGGKKKKGKKKGFQPPPGAGPFAGVEQWVYFDVGRDLRRPL-EDIRSALEYVVGEHVGGARSSER---ETRLINTVAQAFVGEEERAN 690
            SDVR QF+ LL  AG++ ++     E+NRH+     WPVVRAA+CSGLYPNL+RV++ KK+ K +S D+  L  HP SV ++ NP    + W  YHE+ +  GG F+YD +E  PLP+LLFG   R        +H                    GF   P A  F   + W+ +D+G D    L +  +   + ++ +H+G   + E    E   ++ VA A V EE RA+
Sbjct:    3 SDVRDQFRDLLIGAGILAKNSS--LEVNRHAAS---WPVVRAAICSGLYPNLIRVEFRKKRPKFVSRDYDGLKLHPGSVNAQ-NPGHLEQEWLVYHELVKGVGGTFVYDSSEVTPLPVLLFGINAR--ATVDDRVH--------------------GFSLTPSATSFVLGDDWIAYDLGSDENVYLVKKCQEVFDSILDKHLGQTLNVEELSPEKSFLDEVASALV-EEARAS 206
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BLAST of mRNA_E-fasciculatus_F_contig11096.875.1 vs. uniprot
Match: A0A7S1G8Z8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G8Z8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.090e-26
Identity = 77/224 (34.38%), Postives = 107/224 (47.77%), Query Frame = 1 
Query:    1 RTASDVRGQFQTLLRDAGLIPRDREQLAELNRHSEMPKYWPVVRAAMCSGLYPNLVRVDYGKKKFKLLSADHSTLNPHPSSVTSEGNPFNRRWAYYHEMCRTPGGLFIYDLTEAAPLPLLLFGAGQRDPGRPGQLIHKMVTGPHIQGGGKKKKGKKKGFQPPPGAGPFAGVEQWVYFDVGRDLRRPLEDIRSALEYVVGEHVGGARSSER--ETRLINTVAQAF 666
            R   D+R QF+ LLR+ G +  D  +LA+    +E    W V RA + +GLYPNL+RVD+G+K+ KL + +   L PHP SV    + F+ RW  Y +  R  GGLF+YD T   P    LFGAG+ D    G LI +                          AG + GVE WVYF         +E +R AL  V+   +   R +    +  L++ VA A 
Sbjct:  150 RMIEDMREQFRDLLREMGFLRAD-GRLADGGDANEHGGSWGVTRAVLAAGLYPNLIRVDFGRKRCKLFTPNDGKLKPHPGSVNGNEHNFDHRWLCYSDKVRGVGGLFVYDTTPVPPFAYALFGAGRDD----GALIRREAQY---------------------AAGVWVGVEDWVYFAADVRTADAVEAVRMALRRVLTAAIARPRRAMAGADVALVHAVAAAL 347
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BLAST of mRNA_E-fasciculatus_F_contig11096.875.1 vs. uniprot
Match: I2CQV2_NANGC (ATP-dependent RNA helicase DHX36 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CQV2_NANGC)

HSP 1 Score: 120 bits (300), Expect = 1.210e-24
Identity = 81/210 (38.57%), Postives = 115/210 (54.76%), Query Frame = 1 
Query:   13 DVRGQFQTLLRDAGLIPRDREQLAELNR--HSEMPKYWPVVRAAMCSGLYPNLVRVDYGKKKFKLLSADHSTLNPHPSSVTS----EGNP----FNRRWAYYHEMCRTPGGLFIYDLTEAAPLPLLLFGAGQRDPGRPGQLIH-KMVTGP---HIQGGGKKKKGKKKGFQPPPGAGPFAGVEQWVYFDV--GRDLRRPLEDIRSALEYVV 594
            D+R QF TLL+DAGL+P+  E    L R  ++   + WPVV+AA+ +GLYPN++RVDYGKK+    +     L  HPSS+ +     G P       RW  + +  +TP GLF++D +E +PL +LL GAG   P + GQLI    +  P   +IQ      K  KK       A  F GVE WVYF++  G      ++D+R  L Y++
Sbjct:  369 DMRKQFLTLLKDAGLLPQY-EPRTGLGRDYYNAHARSWPVVKAALLAGLYPNVLRVDYGKKRPTFFTQTDGMLKLHPSSINAPPEGSGGPPAPVLFHRWMMFFQKLKTPAGLFVFDTSEVSPLAVLLLGAGL--PEKHGQLIPISSLDFPFDNYIQA-----KRSKKAHIHFANAKTFLGVEPWVYFEIAGGPQATALIQDVRQTLLYLL 570
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11096.875.1 vs. uniprot
Match: A0A7S4DPX9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DPX9_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 1.690e-19
Identity = 55/127 (43.31%), Postives = 79/127 (62.20%), Query Frame = 1 
Query:    7 ASDVRGQFQTLLRDAGLI-PRDREQLAELNRHSEMPKYWPVVRAAMCSGLYPNLVRVDYGKKKFKLLSADHSTLNPHPSSVTSEG---NPFNRRWAYYHEMCRTPGGLFIYDLTEAAPLPLLLFGAG 375
            A  +R QF+TLL++A L+ PR  +  A+  RH+     WPVV+A + +GLYPNL+R+D  K +    S D   +  HP+SV S+    + +  RW +Y+E  +T GGLF YD +E  P P+LLFGAG
Sbjct:  297 AEKIRMQFETLLQEAKLLDPRTHKSFAD--RHASS---WPVVKACLLAGLYPNLLRIDPKKSRSLYFSKDGGRVKIHPASVNSKTRGESDWEHRWLFYYEKVKTKGGLFAYDSSEIGPFPVLLFGAG 418
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BLAST of mRNA_E-fasciculatus_F_contig11096.875.1 vs. uniprot
Match: A0A7S2FPY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FPY2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.460e-15
Identity = 45/132 (34.09%), Postives = 73/132 (55.30%), Query Frame = 1 
Query:    4 TASDVRGQFQTLLRDAGLI-----PRDREQLAE--LNRHSEMPKYWPVVRAAMCSGLYPNLVRVDYGKKKFKLLSADHSTLNPHPSSVTSEGNP-FNRRWAYYHEMCRTPGGLFIYDLTEAAPLPLLLFGAG 375
            T  D+R QF +LL+ +G++       +    AE   NR S   + W  V A++ +GLYPN  RVD    + +  + +   ++ HP SV ++    +  RW  Y +  RT  G+F+YD+T+ +PLPL++FG G
Sbjct:   27 TVEDMRTQFISLLQSSGILLLPCQSNNATTTAEKTANRRS---RNWSCVVASLAAGLYPNCARVDNPTGRARFFTKEQGKVDVHPGSVNAKAKGGWGHRWVIYFDKVRTQSGVFLYDVTQVSPLPLVVFGTG 155
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BLAST of mRNA_E-fasciculatus_F_contig11096.875.1 vs. uniprot
Match: A0A6T6CK03_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6CK03_9RHOD)

HSP 1 Score: 85.9 bits (211), Expect = 9.880e-14
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1 
Query:   13 DVRGQFQTLLRDAGLIPRDREQLAELNRHSEMPKYWPVVRAAMCSGLYPNLVRVDYGKKKFKLLSADHSTLNPHPSSVTSEGNPFNRRWAYYHEMCRTPGGLFIYDLTEAAPLPLLLFG 369
            +++ QF  LL DAG I         + ++ +    WP++ + + +GLYPN+ R+D+G+K+ KLL+ +  T+ PHP SV      F   W  ++E  ++   LFI D T   PL L LFG
Sbjct:  655 EMKDQFLRLLEDAGFISG-----RVVGKYDKNSTCWPLIISILTAGLYPNIARIDFGRKRLKLLTKNDGTVKPHPGSVNKFNASFAHHWMVFYEKVKS-SDLFILDSTAVPPLALCLFG 767
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11096.875.1 vs. uniprot
Match: A0A4Y2L6G9_ARAVE (Putative ATP-dependent RNA helicase YTHDC2 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2L6G9_ARAVE)

HSP 1 Score: 67.8 bits (164), Expect = 4.420e-8
Identity = 60/248 (24.19%), Postives = 103/248 (41.53%), Query Frame = 1 
Query:   16 VRGQFQTLLRDAGLI-PRDREQLAELNRHSEMPKYWPVVRAAMCSGLYPNLVRVDYGK------KKFKLLSADHSTLNPHPSSVTSEGNPFNRR--------WAYYHEMCRTPGGLFIYDLTEAAPLPLLLFGAGQRDPGRPGQLIHKMVTGPHIQGGGKKKKGKKKGFQPPPGAGPFAGVEQWVYFDVGRDLRRPLEDIRSALE--YVVGEHVGGARSSERETRLINTVAQAFVGEEERANPTKPGG 708
            +R Q    LR +G I PR    + +LN +SE+   W V++AA+C+G YPNL+R+D  +      K+ K+     S LN  P S         ++        W +Y EM RT      +  T   PL + LF    R P      +  +      +  G  ++G  +             ++ W+ F V  ++ R +  +R      ++   H      ++ +  +I T+A   V E++  N  +P G
Sbjct:  381 MRSQLLGQLRASGFIRPRGSGDIRDLNSNSEI---WAVIKAALCAGTYPNLIRIDRDRQQLITQKESKVRFHHSSVLNKLPVSAKHSVATLRKQMIAELPCDWLFYEEMMRTGSIAHAHCCTLVTPLSIALFAGPARLP------LDALHEPDQARLEGYMEEGDSEDDSKYDNQKAMFKIDDWISFRVEPEIARLVLQLRQKWHALFLKRMHAPSKGLTQADEAVIRTIAGVLVAEDQALNLQQPAG 619
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BLAST of mRNA_E-fasciculatus_F_contig11096.875.1 vs. uniprot
Match: UPI001939C393 (ATP-dependent DNA/RNA helicase DHX36-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939C393)

HSP 1 Score: 66.6 bits (161), Expect = 1.050e-7
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 1 
Query:   13 DVRGQFQTLLRDAGLIPRDREQLAELNRHSEMPKYWPVVRAAMCSGLYPNLVRVDYGK--KKFKLLSADHSTLNPHPSSVTSE--GNPFNRRWAYYHEMCRTPGGLFIYDLTEAAPLPLLLFG 369
            D++GQF   L   G       +   +N+ S   K   VV A +CSGLYPN+ ++++ K  K  K+++     +N HP SV  E  G  F+ RW  Y+   +T   ++++D +E    PLL FG
Sbjct:  842 DMKGQFAQQLHSIGFCSSPSPKDPIMNKLSNNKK---VVLAVVCSGLYPNIAKINFSKPYKPVKIITKSEK-VNFHPKSVNYEACGEKFSERWLCYYLKMKT-SVIYLFDTSEVTAYPLLFFG 959
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11096.875.1 vs. uniprot
Match: A0A3Q0IJR9_DIACI (3'-5' RNA helicase YTHDC2-like n=2 Tax=Diaphorina citri TaxID=121845 RepID=A0A3Q0IJR9_DIACI)

HSP 1 Score: 63.9 bits (154), Expect = 7.530e-7
Identity = 44/139 (31.65%), Postives = 64/139 (46.04%), Query Frame = 1 
Query:   16 VRGQFQTLLRDAGLI-PRDREQLAELNRHSEMPKYWPVVRAAMCSGLYPNLVRVDYGKKKFKLLSADHSTLNPHPSSVTSEGN--PFNRR--------------WAYYHEMCRTPGGLFIYDLTEAAPLPLLLFGAGQR 381
             R Q  + LR +G + PR    + +LN +SE   YWPV++A + +GLYPNLVRVD  +    L S     +  HP+S+  E +  P  +               W  Y EM RT   + +   T   PL + +F    R
Sbjct:  702 TRSQLLSQLRASGFVKPRGTSDMKDLNTNSE---YWPVIKACLVAGLYPNLVRVD--RAHSVLRSQKEPKILLHPASILREAHFEPETKASTAHTKAVQGLASDWLIYEEMSRTGNLVHVKTCTVVTPLAVAMFAGPMR 835
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11096.875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCZ3_ECTSI1.900e-23468.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3UW47_HETAK8.050e-3036.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1G8Z8_9STRA1.090e-2634.38Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
I2CQV2_NANGC1.210e-2438.57ATP-dependent RNA helicase DHX36 n=2 Tax=Nannochlo... [more]
A0A7S4DPX9_9EUKA1.690e-1943.31Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2FPY2_9STRA9.460e-1534.09Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6T6CK03_9RHOD9.880e-1435.29Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A4Y2L6G9_ARAVE4.420e-824.19Putative ATP-dependent RNA helicase YTHDC2 n=1 Tax... [more]
UPI001939C3931.050e-733.33ATP-dependent DNA/RNA helicase DHX36-like n=1 Tax=... [more]
A0A3Q0IJR9_DIACI7.530e-731.653'-5' RNA helicase YTHDC2-like n=2 Tax=Diaphorina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11096contigE-fasciculatus_F_contig11096:430..4414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score703.0
Seed ortholog evalue1.2e-199
Seed eggNOG ortholog2880.D8LCZ3
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0920@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHelicase-associated domain
Ec32 orthologEc-01_001630.1
Exons7
Model size1773
Cds size1773
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927614.5462723-CDS-E-fasciculatus_F_contig11096:429..5331622927614.5462723-CDS-E-fasciculatus_F_contig11096:429..533Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 430..533 +
1695995620.1239858-CDS-E-fasciculatus_F_contig11096:429..5331695995620.1239858-CDS-E-fasciculatus_F_contig11096:429..533Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 430..533 +
1622927614.5908046-CDS-E-fasciculatus_F_contig11096:853..9471622927614.5908046-CDS-E-fasciculatus_F_contig11096:853..947Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 854..947 +
1695995620.1344903-CDS-E-fasciculatus_F_contig11096:853..9471695995620.1344903-CDS-E-fasciculatus_F_contig11096:853..947Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 854..947 +
1622927614.6037962-CDS-E-fasciculatus_F_contig11096:1172..13621622927614.6037962-CDS-E-fasciculatus_F_contig11096:1172..1362Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 1173..1362 +
1695995620.1469865-CDS-E-fasciculatus_F_contig11096:1172..13621695995620.1469865-CDS-E-fasciculatus_F_contig11096:1172..1362Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 1173..1362 +
1622927614.6190896-CDS-E-fasciculatus_F_contig11096:1905..19761622927614.6190896-CDS-E-fasciculatus_F_contig11096:1905..1976Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 1906..1976 +
1695995620.158377-CDS-E-fasciculatus_F_contig11096:1905..19761695995620.158377-CDS-E-fasciculatus_F_contig11096:1905..1976Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 1906..1976 +
1622927614.6444273-CDS-E-fasciculatus_F_contig11096:2426..25341622927614.6444273-CDS-E-fasciculatus_F_contig11096:2426..2534Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 2427..2534 +
1695995620.1676617-CDS-E-fasciculatus_F_contig11096:2426..25341695995620.1676617-CDS-E-fasciculatus_F_contig11096:2426..2534Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 2427..2534 +
1622927614.6574292-CDS-E-fasciculatus_F_contig11096:2713..28451622927614.6574292-CDS-E-fasciculatus_F_contig11096:2713..2845Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 2714..2845 +
1695995620.1759338-CDS-E-fasciculatus_F_contig11096:2713..28451695995620.1759338-CDS-E-fasciculatus_F_contig11096:2713..2845Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 2714..2845 +
1622927614.6920948-CDS-E-fasciculatus_F_contig11096:3340..44141622927614.6920948-CDS-E-fasciculatus_F_contig11096:3340..4414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 3341..4414 +
1695995620.184812-CDS-E-fasciculatus_F_contig11096:3340..44141695995620.184812-CDS-E-fasciculatus_F_contig11096:3340..4414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11096 3341..4414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11096.875.1prot_E-fasciculatus_F_contig11096.875.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11096 430..4414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11096.875.1

>prot_E-fasciculatus_F_contig11096.875.1 ID=prot_E-fasciculatus_F_contig11096.875.1|Name=mRNA_E-fasciculatus_F_contig11096.875.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=591bp
RTASDVRGQFQTLLRDAGLIPRDREQLAELNRHSEMPKYWPVVRAAMCSG
LYPNLVRVDYGKKKFKLLSADHSTLNPHPSSVTSEGNPFNRRWAYYHEMC
RTPGGLFIYDLTEAAPLPLLLFGAGQRDPGRPGQLIHKMVTGPHIQGGGK
KKKGKKKGFQPPPGAGPFAGVEQWVYFDVGRDLRRPLEDIRSALEYVVGE
HVGGARSSERETRLINTVAQAFVGEEERANPTKPGGGHDRSQHHHGTMKA
YNVDADDDYEFHRPGHGGSEYRGSGYGAYRGYGDGSSGANVSSSSRGGSS
GGFGSSSAMGGAHGGYSRGGGGAGGHYSSSSYSGGGGGGGGGSHVQNGAG
YPPYGGGGGDRSGDHRGDSSRGGSGGHYGKSSPPLSEKPPPHAVGGGGGG
DARYAAPQAAPKLGHGSSMSGGGSSAMSGSAHAGGSFGSYSHYGGVSRGS
GGGSGGATPLGPGGGPARYNPSNGDSSGGGGYQGGGRGDPGSVSQPRSLA
RPGGVASHEFTRGPMRPSTHSPVSTVLGGEYHNYAVPPGSAPLGGGGGGG
EGGAGHPQHHYVSRSVPMARGEDSRDRDGHGGRGGKRGRW*
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mRNA from alignment at E-fasciculatus_F_contig11096:430..4414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11096.875.1 ID=mRNA_E-fasciculatus_F_contig11096.875.1|Name=mRNA_E-fasciculatus_F_contig11096.875.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3985bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11096:430..4414+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGACCGCCTCTGATGTCCGAGGGCAGTTCCAGACCCTCCTGCGGGACGC
GGGACTGATCCCGCGAGACAGGGAGCAGCTCGCGGAGCTCAACCGCCACT
CAGAGTGAGTTGTGGCGACACAAAGCAGAGAAATGGTGTTGTAAAAATGC
AGTACAGTAGTAGGGGGAGTGTGCGCCACCACATACATCGGAGCCGCATG
TATCTGATGATGGGGGGGTCCGACTAGGGCCAGCAGTTTTTCGACTTTTG
GTATTGCGGGGTATTCCTGCCGCGAAATGTGTGTCGGGAGCAGTGTTCCT
TACTTTTTTGTTGTTGTTGTTACAAAACCAGAAGAAATTCGTCTCTATAT
ACAGATGCAGACAATAGCAATGATTTCATGATGCCATATGACCTTCCTTT
TTGTCTGCGTTTTGGTGCCTTCAGGATGCCCAAGTACTGGCCGGTGGTGC
GAGCGGCGATGTGCTCCGGCCTGTACCCCAACCTTGTGCGGGTGGACTAC
GGCAAGAAAAAGTTTAAGGTCAGTGCCTTCTTGAGCTTTGGCTTTGGTTT
GCGTGCTGCTTTGTCGCTACCTCCTACTTCCCCCGACATTGCACTTGTTC
TCATGTGCATTTCTTCCCCTCTCTTGCTTACCTAGTATGACCACATCTTA
CGAAGGTCATAAAAGCCTCTTTTTATGCTGAACACCCTTCCCCTTCCCTC
CCCCCTCCCCTCCCCTCGCAAACAAAAACAACACAACGCTCAGCTCCTCT
CTGCGGACCACAGCACGCTGAACCCTCACCCGTCCAGCGTGACGTCGGAG
GGCAACCCGTTCAACCGGCGGTGGGCCTACTACCACGAGATGTGCCGCAC
GCCGGGGGGCCTGTTCATCTACGACCTCACCGAGGCGGCGCCACTGCCGC
TGCTGCTGTTCGGGGCGGGGCAACGCGACCCTGGTGAGAGGTAGATGACG
AGAGGCAGGCAAGGGGGGAGAGGGGGAGCGACAGAGTGTACTTTGTGTGA
GACAGGCGTTGTGTGAGTCACAGGCATTGTGTAAGACAGGCAGGCAGAGA
AAATATGAGGGTAACAACATGAGAGGAGGCGATATCAACACTTCGGCAGG
CAAGAGAGAAAAACTATTCCTTGTTTAATCAGGTCGTGTTTGGCGAAGAC
ACGGTTGCGGTACAGCAGAGGCTCCAGTGTATCGAAATACCGCTGTTTGA
ACGGAGTCGATAGCCGTTCGGCTTCGGTTCGTAACCAACACGTCTCTTGT
CACGGTCGGAACGACCTCTTGCTAGTGTAACGAGAAATGAGCACAACAAA
AGCGACTGAAATGGGCGTACTGTTGTTAGGTCACATTGACTTAATAGTTC
AAAATTGAGACTCAACAGAACCAAAAGACGAAATCAGCAACCGCAAAGTC
AATGACGACGACTGTTATAAGACTAAATGACTACGACGGAATCGTGTCGT
CCGCCTCGTGTTGATTTGATTGGCAGGTCGGCCCGGACAGCTGATACACA
AGATGGTCACTGGCCCACACATCCAGGGGGGAGGCAAGAAAAAGAAGGTG
GGCAGCAGTTTAATCGAGAGCAGTGCTTTCATCTAGCGATAGACTGGTCG
ACAAGAACACCTTCCGCTTGTTTTCAACGGGGAGGTCGTAGGCCAGCGCG
AAGGGTGGGCTTGGTTACTGTTTCTCTTGGCCAGCTAGGACGGCGTGCCG
CAGTCATGTACGACCAGCAGGGGTATGGGTGTTTCTTTAATCCCCCCTTG
CTGTGATGTTGCGACACCGCCGTAGGGGGAACTGATGTGCGCGCCGCGAG
CTAGAAGGAGGTGCCGAACCCGCTACCCTTGACCTTGTCGCACTGCCTTT
GATCGTTGCGTCGTTTCGAGCGTGGTAGTTTTGCCCCCCTTGAAATTTCC
TGGATCGTCATCGCATTTGTTTGAGCTGGTTACTTACCCGCCCTTGCTTT
TTTTTTTCGATTGCCGTCACTCTTGACTTGTGTCATTTTGTGTGCAGGGC
AAGAAGAAGGGGTTCCAACCCCCTCCCGGCGCGGGGCCCTTCGCCGGGGT
GGAGCAGTGGGTGTACTTCGACGTCGGACGTGACCTCAGGCGCCCGCTCG
AAGATGTGAGTTTTGTTGTACGTTGCCGCTGTTGGCACTGCTGTAAGACA
CCATGCCGCGCTTTCGCAAGACTTGTCACACGGTAAGACATGTCAACAAC
ACGGCAGGGTCAACAACAACAACAACAAGAGTGACGAGAAACCGCCCCCC
TATTTCCCGACGTGTCGCTCGTGCTGCTACGCAGATTCGGTCGGCTCTGG
AGTACGTGGTCGGGGAGCACGTCGGCGGCGCCAGGTCATCCGAGAGGGAG
ACTCGCCTCATCAACACCGTCGCCCAGGCCTTCGTAGGAGAAGAAGAGCG
GGCAAACCCCACTAAGGTGACAGGGAGGGAGTGCTCGTGTTTTGCATGAC
TTAGCGGTTAGGCCATTGACAACGCGTCCTCGAGAGGACGGAGCGTGATG
GGGGGGGGCAGGCAGATAATGACAGAACGGATTAGATGTCGCCGTTGCCT
CACGAGATTGCGGTTGGTCGTCTGGGCGGCCTATGATTTGTGGTGGAGAT
GTTTTCGTAGTCCTGGCCGGCAACGAGTTGTCTCGGCGACCAGAGCGTAG
TTATGGATTTGCTGTTGACAGGTGTGATGAAGCAGGCGCCGCAAAGAGTT
AACAGCACCCGGCCAAGTGAGGAAGTATTTAGTTGTACATCGGACTCTGT
GTGCGACGGAAGCGCACATGCCGACGGGAGCCCCCCCTCGCGAATCAACA
ACCGCCGTCTGTCGACTCCTCGACGCTGACTCTTCCGCCGGCGTACCCCA
TCTCTTCAACCGTTCCCCTTGCGTCCTTCTCATGTTTTGCCGCCCCCAAC
AACAACTACAGCCCGGGGGTGGACACGACCGCTCGCAACACCACCACGGC
ACCATGAAGGCGTACAACGTGGACGCGGACGATGACTACGAGTTCCACCG
CCCCGGCCACGGGGGCTCCGAGTACCGCGGGTCAGGGTACGGCGCCTACC
GGGGCTACGGCGACGGCAGCAGCGGAGCCAACGTCTCCTCCTCGTCTCGC
GGCGGCAGCAGCGGCGGGTTCGGCAGCAGCTCCGCCATGGGCGGCGCCCA
CGGAGGTTACTCCCGAGGCGGCGGCGGGGCGGGGGGCCACTACAGCAGCA
GCAGCTACAGCGGCGGCGGTGGTGGCGGCGGCGGCGGCAGCCACGTTCAA
AACGGAGCGGGGTACCCGCCGTACGGCGGCGGCGGCGGCGACCGCAGCGG
TGACCACCGAGGCGACAGCAGTCGCGGCGGAAGCGGCGGCCACTACGGCA
AGTCGTCCCCGCCCCTGAGCGAGAAACCTCCTCCCCACGCCGTGGGAGGA
GGAGGAGGAGGAGACGCCCGGTACGCCGCCCCGCAAGCCGCCCCCAAGCT
CGGCCACGGGTCCTCCATGTCCGGCGGCGGCTCATCCGCCATGTCGGGGT
CCGCGCACGCCGGCGGCTCGTTCGGCAGCTACAGCCACTACGGCGGCGTC
AGTCGCGGGAGCGGCGGCGGCAGCGGCGGTGCAACCCCGCTCGGACCCGG
TGGGGGGCCCGCCCGCTACAACCCCTCCAACGGGGACTCGTCGGGGGGCG
GGGGTTACCAAGGAGGCGGCAGGGGGGATCCCGGCAGCGTGTCTCAGCCC
CGCTCGTTGGCCCGCCCGGGAGGCGTGGCGTCGCACGAGTTCACCCGCGG
CCCCATGAGGCCGTCTACGCACTCCCCCGTGTCCACCGTGCTCGGCGGCG
AGTACCACAACTACGCCGTGCCTCCGGGCAGCGCGCCGCTCGGGGGCGGC
GGCGGTGGCGGCGAGGGGGGGGCGGGGCACCCGCAGCACCACTACGTGTC
GAGGAGCGTCCCCATGGCGCGCGGGGAGGACTCGCGCGACCGGGATGGCC
ACGGCGGGCGGGGGGGAAAGCGCGGCCGCTGGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11096:430..4414+

>mRNA_E-fasciculatus_F_contig11096.875.1 ID=mRNA_E-fasciculatus_F_contig11096.875.1|Name=mRNA_E-fasciculatus_F_contig11096.875.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11096:430..4414+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGACCGCCTCTGATGTCCGAGGGCAGTTCCAGACCCTCCTGCGGGACGC
GGGACTGATCCCGCGAGACAGGGAGCAGCTCGCGGAGCTCAACCGCCACT
CAGAAGGACCGCCTCTGATGTCCGAGGGCAGTTCCAGACCCTCCTGCGGG
ACGCGGGACTGATCCCGCGAGACAGGGAGCAGCTCGCGGAGCTCAACCGC
CACTCAGAGATGCCCAAGTACTGGCCGGTGGTGCGAGCGGCGATGTGCTC
CGGCCTGTACCCCAACCTTGTGCGGGTGGACTACGGCAAGAAAAAGTTTA
AGGATGCCCAAGTACTGGCCGGTGGTGCGAGCGGCGATGTGCTCCGGCCT
GTACCCCAACCTTGTGCGGGTGGACTACGGCAAGAAAAAGTTTAAGCTCC
TCTCTGCGGACCACAGCACGCTGAACCCTCACCCGTCCAGCGTGACGTCG
GAGGGCAACCCGTTCAACCGGCGGTGGGCCTACTACCACGAGATGTGCCG
CACGCCGGGGGGCCTGTTCATCTACGACCTCACCGAGGCGGCGCCACTGC
CGCTGCTGCTGTTCGGGGCGGGGCAACGCGACCCTGCTCCTCTCTGCGGA
CCACAGCACGCTGAACCCTCACCCGTCCAGCGTGACGTCGGAGGGCAACC
CGTTCAACCGGCGGTGGGCCTACTACCACGAGATGTGCCGCACGCCGGGG
GGCCTGTTCATCTACGACCTCACCGAGGCGGCGCCACTGCCGCTGCTGCT
GTTCGGGGCGGGGCAACGCGACCCTGGTCGGCCCGGACAGCTGATACACA
AGATGGTCACTGGCCCACACATCCAGGGGGGAGGCAAGAAAAAGAAGGTC
GGCCCGGACAGCTGATACACAAGATGGTCACTGGCCCACACATCCAGGGG
GGAGGCAAGAAAAAGAAGGGCAAGAAGAAGGGGTTCCAACCCCCTCCCGG
CGCGGGGCCCTTCGCCGGGGTGGAGCAGTGGGTGTACTTCGACGTCGGAC
GTGACCTCAGGCGCCCGCTCGAAGATGGCAAGAAGAAGGGGTTCCAACCC
CCTCCCGGCGCGGGGCCCTTCGCCGGGGTGGAGCAGTGGGTGTACTTCGA
CGTCGGACGTGACCTCAGGCGCCCGCTCGAAGATATTCGGTCGGCTCTGG
AGTACGTGGTCGGGGAGCACGTCGGCGGCGCCAGGTCATCCGAGAGGGAG
ACTCGCCTCATCAACACCGTCGCCCAGGCCTTCGTAGGAGAAGAAGAGCG
GGCAAACCCCACTAAGATTCGGTCGGCTCTGGAGTACGTGGTCGGGGAGC
ACGTCGGCGGCGCCAGGTCATCCGAGAGGGAGACTCGCCTCATCAACACC
GTCGCCCAGGCCTTCGTAGGAGAAGAAGAGCGGGCAAACCCCACTAAGCC
CGGGGGTGGACACGACCGCTCGCAACACCACCACGGCACCATGAAGGCGT
ACAACGTGGACGCGGACGATGACTACGAGTTCCACCGCCCCGGCCACGGG
GGCTCCGAGTACCGCGGGTCAGGGTACGGCGCCTACCGGGGCTACGGCGA
CGGCAGCAGCGGAGCCAACGTCTCCTCCTCGTCTCGCGGCGGCAGCAGCG
GCGGGTTCGGCAGCAGCTCCGCCATGGGCGGCGCCCACGGAGGTTACTCC
CGAGGCGGCGGCGGGGCGGGGGGCCACTACAGCAGCAGCAGCTACAGCGG
CGGCGGTGGTGGCGGCGGCGGCGGCAGCCACGTTCAAAACGGAGCGGGGT
ACCCGCCGTACGGCGGCGGCGGCGGCGACCGCAGCGGTGACCACCGAGGC
GACAGCAGTCGCGGCGGAAGCGGCGGCCACTACGGCAAGTCGTCCCCGCC
CCTGAGCGAGAAACCTCCTCCCCACGCCGTGGGAGGAGGAGGAGGAGGAG
ACGCCCGGTACGCCGCCCCGCAAGCCGCCCCCAAGCTCGGCCACGGGTCC
TCCATGTCCGGCGGCGGCTCATCCGCCATGTCGGGGTCCGCGCACGCCGG
CGGCTCGTTCGGCAGCTACAGCCACTACGGCGGCGTCAGTCGCGGGAGCG
GCGGCGGCAGCGGCGGTGCAACCCCGCTCGGACCCGGTGGGGGGCCCGCC
CGCTACAACCCCTCCAACGGGGACTCGTCGGGGGGCGGGGGTTACCAAGG
AGGCGGCAGGGGGGATCCCGGCAGCGTGTCTCAGCCCCGCTCGTTGGCCC
GCCCGGGAGGCGTGGCGTCGCACGAGTTCACCCGCGGCCCCATGAGGCCG
TCTACGCACTCCCCCGTGTCCACCGTGCTCGGCGGCGAGTACCACAACTA
CGCCGTGCCTCCGGGCAGCGCGCCGCTCGGGGGCGGCGGCGGTGGCGGCG
AGGGGGGGGCGGGGCACCCGCAGCACCACTACGTGTCGAGGAGCGTCCCC
ATGGCGCGCGGGGAGGACTCGCGCGACCGGGATGGCCACGGCGGGCGGGG
GGGAAAGCGCGGCCGCTGGTAACCCGGGGGTGGACACGACCGCTCGCAAC
ACCACCACGGCACCATGAAGGCGTACAACGTGGACGCGGACGATGACTAC
GAGTTCCACCGCCCCGGCCACGGGGGCTCCGAGTACCGCGGGTCAGGGTA
CGGCGCCTACCGGGGCTACGGCGACGGCAGCAGCGGAGCCAACGTCTCCT
CCTCGTCTCGCGGCGGCAGCAGCGGCGGGTTCGGCAGCAGCTCCGCCATG
GGCGGCGCCCACGGAGGTTACTCCCGAGGCGGCGGCGGGGCGGGGGGCCA
CTACAGCAGCAGCAGCTACAGCGGCGGCGGTGGTGGCGGCGGCGGCGGCA
GCCACGTTCAAAACGGAGCGGGGTACCCGCCGTACGGCGGCGGCGGCGGC
GACCGCAGCGGTGACCACCGAGGCGACAGCAGTCGCGGCGGAAGCGGCGG
CCACTACGGCAAGTCGTCCCCGCCCCTGAGCGAGAAACCTCCTCCCCACG
CCGTGGGAGGAGGAGGAGGAGGAGACGCCCGGTACGCCGCCCCGCAAGCC
GCCCCCAAGCTCGGCCACGGGTCCTCCATGTCCGGCGGCGGCTCATCCGC
CATGTCGGGGTCCGCGCACGCCGGCGGCTCGTTCGGCAGCTACAGCCACT
ACGGCGGCGTCAGTCGCGGGAGCGGCGGCGGCAGCGGCGGTGCAACCCCG
CTCGGACCCGGTGGGGGGCCCGCCCGCTACAACCCCTCCAACGGGGACTC
GTCGGGGGGCGGGGGTTACCAAGGAGGCGGCAGGGGGGATCCCGGCAGCG
TGTCTCAGCCCCGCTCGTTGGCCCGCCCGGGAGGCGTGGCGTCGCACGAG
TTCACCCGCGGCCCCATGAGGCCGTCTACGCACTCCCCCGTGTCCACCGT
GCTCGGCGGCGAGTACCACAACTACGCCGTGCCTCCGGGCAGCGCGCCGC
TCGGGGGCGGCGGCGGTGGCGGCGAGGGGGGGGCGGGGCACCCGCAGCAC
CACTACGTGTCGAGGAGCGTCCCCATGGCGCGCGGGGAGGACTCGCGCGA
CCGGGATGGCCACGGCGGGCGGGGGGGAAAGCGCGGCCGCTGGTAA
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