mRNA_E-fasciculatus_F_contig11080.864.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11080.864.1
Unique NamemRNA_E-fasciculatus_F_contig11080.864.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig11080.864.1 vs. uniprot
Match: D8LPN0_ECTSI (ABC1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN0_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 1.040e-55
Identity = 99/119 (83.19%), Postives = 102/119 (85.71%), Query Frame = 1
Query:    7 VVSRLSRVFPSGLSNFYSGLVASSIDRTAMLDELDFRKEAKNIEDFTGFLDRAGIRDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 363
            + SRL  +    L       +AS I RTAMLDELDFRKEAKNIEDFTGFLDRAGI DAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA
Sbjct:   20 IASRLLEILQPELGRTSFAAIASDI-RTAMLDELDFRKEAKNIEDFTGFLDRAGILDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 137          
BLAST of mRNA_E-fasciculatus_F_contig11080.864.1 vs. uniprot
Match: A0A6H5KTF5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF5_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 2.150e-51
Identity = 97/119 (81.51%), Postives = 101/119 (84.87%), Query Frame = 1
Query:    7 VVSRLSRVFPSGLSNFYSGLVASSIDRTAMLDELDFRKEAKNIEDFTGFLDRAGIRDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 363
            + SRL  +    L       +AS I RTAMLDELDFRKEAKNIEDFTGFL RAGI DAVAPKVYEDLSSKRLLVMERLKGVALTDL+GIKDYSSNPEATLITALNTWSMSVMMAESFHA
Sbjct:  321 IASRLLEILQPELGRTSFAAIASDI-RTAMLDELDFRKEAKNIEDFTGFLGRAGILDAVAPKVYEDLSSKRLLVMERLKGVALTDLDGIKDYSSNPEATLITALNTWSMSVMMAESFHA 438          
BLAST of mRNA_E-fasciculatus_F_contig11080.864.1 vs. uniprot
Match: A0A835YPW4_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW4_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.240e-31
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 1
Query:   85 RTAMLDELDFRKEAKNIEDFTGFLDRAGIRDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 363
            R +MLDELDF KEA NI++F  FL  A +  A AP+VY  LS++R+L MERLKGV LTD+EGI+ YS+NPEATLI ALNTWS+SVMM  SFHA
Sbjct:  262 RASMLDELDFGKEADNIDEFLQFLSDADVTQATAPRVYRSLSTRRVLTMERLKGVPLTDIEGIRRYSANPEATLINALNTWSLSVMMCNSFHA 354          
BLAST of mRNA_E-fasciculatus_F_contig11080.864.1 vs. uniprot
Match: A0A4D9CYJ6_9STRA (ABC1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYJ6_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.170e-28
Identity = 59/121 (48.76%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    1 VCVVSRLSRVFPSGLSNFYSGLVASSIDRTAMLDELDFRKEAKNIEDFTGFLDRAGIRDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 363
            + + SRL       L+    G + + I R+++L+E+DF KE  N+E+F  FLD+AG+  A  PKVY +LS++++L MERL+GV+L DLEGI+ Y+ +PE  LITALNTWS+SV++  SFHA
Sbjct:  216 IYLASRLIETLAPDLARTSLGDIVADI-RSSILEEVDFSKEQANLEEFRMFLDQAGVTAATCPKVYPELSTRKVLTMERLRGVSLIDLEGIRAYTDDPEGALITALNTWSLSVVLCPSFHA 335          
BLAST of mRNA_E-fasciculatus_F_contig11080.864.1 vs. uniprot
Match: A0A7S0XPK8_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XPK8_HEMAN)

HSP 1 Score: 112 bits (280), Expect = 2.340e-26
Identity = 61/101 (60.40%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   61 GLVASSIDRTAMLDELDFRKEAKNIEDFTGFLDRAGIRDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 363
            G +A  I RT MLDELDFRKEA NI+DF  FL  + I + V P VY   SSKRLL M+RL G  LTDLE I  YS+NPE TL+ ALNTW  SV+  +SFHA
Sbjct:  296 GNIAEDI-RTTMLDELDFRKEADNIQDFQAFLTASDIDNVVCPFVYRGESSKRLLTMQRLYGRPLTDLEAIASYSANPEETLLNALNTWMASVVACKSFHA 395          
BLAST of mRNA_E-fasciculatus_F_contig11080.864.1 vs. uniprot
Match: A0A6T5M278_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5M278_HETAK)

HSP 1 Score: 111 bits (277), Expect = 3.670e-26
Identity = 62/120 (51.67%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    7 VVSRLSRVFPSGLSNFYSGLVASSIDRTAMLDELDFRKEAKNIEDFTGFLDRAGIRD-AVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 363
            V SR+  +    L       +A  I RT+MLDELDF KEA NI +F  FL R G+   A AP+VY +LS +R+L MER  GV LTDL+ I+ YSS PE TLI ALNTW+ SV++ ++FHA
Sbjct:  198 VTSRVLELLSPELGRVALADIAGDI-RTSMLDELDFTKEAANIAEFRDFLVREGLTGVAAAPRVYPELSGRRVLCMERFDGVPLTDLDNIRRYSSQPEKTLIDALNTWTASVLLCDTFHA 316          
BLAST of mRNA_E-fasciculatus_F_contig11080.864.1 vs. uniprot
Match: A0A6C1NIZ5_9GAMM (AarF/ABC1/UbiB kinase family protein n=1 Tax=Halomonadaceae bacterium TaxID=2026746 RepID=A0A6C1NIZ5_9GAMM)

HSP 1 Score: 110 bits (274), Expect = 5.990e-26
Identity = 57/99 (57.58%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   67 VASSIDRTAMLDELDFRKEAKNIEDFTGFLDRAGIRDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 363
            V   I RT M++E DF KEA N+E F  FL+  G RDA  PKVY DLSS+R+L MER  GV LTDLE I+ +S +PE TLITA+NTW  S+   E FHA
Sbjct:  173 VVQEIQRT-MMEECDFVKEANNLETFARFLEDTGNRDATVPKVYRDLSSRRVLTMERFHGVPLTDLESIRRFSKDPERTLITAMNTWFASLTQCEFFHA 270          
BLAST of mRNA_E-fasciculatus_F_contig11080.864.1 vs. uniprot
Match: D8LFG3_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG3_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 9.470e-26
Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   85 RTAMLDELDFRKEAKNIEDFTGFLDRAGI-RDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 363
            R++MLDELDF+KEA N E F  FL  +GI  +  APKV+ + S++R+L MERL GV LTDLEGI+  S NPEATLI+ALNTW++SVM  + FHA
Sbjct:  273 RSSMLDELDFKKEAANQEVFRTFLKESGIDHEVTAPKVFPEASTERVLTMERLYGVPLTDLEGIQKVSKNPEATLISALNTWTLSVMNCDFFHA 366          
BLAST of mRNA_E-fasciculatus_F_contig11080.864.1 vs. uniprot
Match: A0A6H5KMH0_9PHAE (ABC1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.270e-25
Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   85 RTAMLDELDFRKEAKNIEDFTGFLDRAGI-RDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 363
            R++MLDELDF+KEA N E F  FL  +GI  +  APKV+ + S++R+L MERL GV LTDLEGI+  S NPEATLI+ALNTW++SVM  + FHA
Sbjct:  292 RSSMLDELDFKKEAANQEIFRAFLKESGIDHEVTAPKVFPEASTERVLTMERLYGVPLTDLEGIQKVSQNPEATLISALNTWTLSVMNCDFFHA 385          
BLAST of mRNA_E-fasciculatus_F_contig11080.864.1 vs. uniprot
Match: A0A1D1ZEB0_9ARAE (Putative aarF domain-containing protein kinase At5g05200, chloroplastic (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZEB0_9ARAE)

HSP 1 Score: 110 bits (274), Expect = 1.530e-25
Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   85 RTAMLDELDFRKEAKNIEDFTGFLDRAGI-RDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 363
            + +ML+E+DFRKEA NIE F G+L+  G+ R A+APKVY+  S++R+L MERL GV LTDL+ IK  SS+PE TL+TALN W  S++  E+FHA
Sbjct:  298 KESMLEEVDFRKEAANIESFRGYLENMGLTRQAIAPKVYQHCSTRRILTMERLYGVPLTDLDSIKSLSSDPEMTLVTALNVWFGSLLARETFHA 391          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11080.864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPN0_ECTSI1.040e-5583.19ABC1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KTF5_9PHAE2.150e-5181.51Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835YPW4_9STRA1.240e-3166.67ABC1 family-domain-containing protein n=1 Tax=Trib... [more]
A0A4D9CYJ6_9STRA1.170e-2848.76ABC1 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S0XPK8_HEMAN2.340e-2660.40Hypothetical protein n=3 Tax=Hemiselmis andersenii... [more]
A0A6T5M278_HETAK3.670e-2651.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6C1NIZ5_9GAMM5.990e-2657.58AarF/ABC1/UbiB kinase family protein n=1 Tax=Halom... [more]
D8LFG3_ECTSI9.470e-2660.64Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KMH0_9PHAE1.270e-2560.64ABC1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A1D1ZEB0_9ARAE1.530e-2557.45Putative aarF domain-containing protein kinase At5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11080contigE-fasciculatus_F_contig11080:466..1348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue1.4e-44
Seed eggNOG ortholog2880.D8LPN0
KEGG koko:K08869
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0010287,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
Ec32 ortholog descriptionUbiB domain
Ec32 orthologEc-06_004750.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Hectar predicted targeting categorymitochondrion
Exons2
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927613.494927-CDS-E-fasciculatus_F_contig11080:465..6631622927613.494927-CDS-E-fasciculatus_F_contig11080:465..663Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11080 466..663 -
1695995619.5987527-CDS-E-fasciculatus_F_contig11080:465..6631695995619.5987527-CDS-E-fasciculatus_F_contig11080:465..663Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11080 466..663 -
1622927613.508737-CDS-E-fasciculatus_F_contig11080:1156..13481622927613.508737-CDS-E-fasciculatus_F_contig11080:1156..1348Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11080 1157..1348 -
1695995619.6093912-CDS-E-fasciculatus_F_contig11080:1156..13481695995619.6093912-CDS-E-fasciculatus_F_contig11080:1156..1348Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11080 1157..1348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11080.864.1prot_E-fasciculatus_F_contig11080.864.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11080 466..1348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11080.864.1

>prot_E-fasciculatus_F_contig11080.864.1 ID=prot_E-fasciculatus_F_contig11080.864.1|Name=mRNA_E-fasciculatus_F_contig11080.864.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp
VCVVSRLSRVFPSGLSNFYSGLVASSIDRTAMLDELDFRKEAKNIEDFTG
FLDRAGIRDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEA
TLITALNTWSMSVMMAESFHAVRSIVLLVL
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mRNA from alignment at E-fasciculatus_F_contig11080:466..1348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11080.864.1 ID=mRNA_E-fasciculatus_F_contig11080.864.1|Name=mRNA_E-fasciculatus_F_contig11080.864.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=883bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11080:466..1348- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTTGTGTGGTTTCCAGATTGTCGCGTGTTTTTCCTTCCGGTCTCTCTAA CTTTTATAGTGGACTGGTTGCTTCATCTATTGATAGGACGGCTATGCTGG ATGAGCTCGACTTCCGCAAGGAGGCGAAGAACATCGAAGACTTCACCGGG TTCCTGGATAGGGCGGGCATCCGGGATGCGGTCGCCCCCAAGGTGTGTTT TTTCTCTTTTTTTGCGCTTGTTTTTCGTTTGTTAGGGGAAATTAGTTGTC CTGCATGCTCGACCATCTCCACGGACCCCTTTCTGCCAAAACGAAAACCG CTAGAAATGAAAACTCCCGTATTTGATTGAAAAAGCGATGCCATTCCCGC TCAAAGACCGTCCGTGAATAAGAGAGAACCGACGGGTTGCTGGCCTTCGA AAATATATAACGTGGAGTGCGTAAGGACGAAGGTTTGTTCTCTTGACATC TCAGGCATGCGTGGACCTTGCATCATACCTATATACACAGAGTCGTGGGC CCAATTCAAAGCGTCAACAAGCTGACTATGTTGTCTGTGCCGAACGGAGT TCACCCAGCCTCTCAAATCAAACAAGTAAACAACTTGGTTATATCTGTGC CAAAGAGAGGGTCCAACAACAGCAACCAAAGAGAGTCCAACAACAACAAC AACAACAACAACGTCATCGACTGTTGTGAACAAAGGTGTACGAGGATCTC AGCTCGAAGCGACTGCTGGTGATGGAGCGCCTGAAGGGCGTGGCTCTCAC CGACCTCGAGGGCATCAAGGACTACAGCAGCAACCCGGAAGCCACCCTCA TCACGGCCCTCAACACCTGGAGCATGAGCGTCATGATGGCTGAGAGCTTC CACGCGGTGCGTTCAATTGTGTTGTTGGTGTTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11080:466..1348-

>mRNA_E-fasciculatus_F_contig11080.864.1 ID=mRNA_E-fasciculatus_F_contig11080.864.1|Name=mRNA_E-fasciculatus_F_contig11080.864.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11080:466..1348- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTTGTGTGGTTTCCAGATTGTCGCGTGTTTTTCCTTCCGGTCTCTCTAA
CTTTTATAGTGGACTGGTTGCTTCATCTATTGATAGGACGGCTATGCTGG
ATGAGCTCGACTTCCGCAAGGAGGCGAAGAACATCGAAGACTTCACCGGG
TTCCTGGATAGGGCGGGCATCCGGGATGCGGTCGCCCCCAAGGTTTGTGT
GGTTTCCAGATTGTCGCGTGTTTTTCCTTCCGGTCTCTCTAACTTTTATA
GTGGACTGGTTGCTTCATCTATTGATAGGACGGCTATGCTGGATGAGCTC
GACTTCCGCAAGGAGGCGAAGAACATCGAAGACTTCACCGGGTTCCTGGA
TAGGGCGGGCATCCGGGATGCGGTCGCCCCCAAGGTGTACGAGGATCTCA
GCTCGAAGCGACTGCTGGTGATGGAGCGCCTGAAGGGCGTGGCTCTCACC
GACCTCGAGGGCATCAAGGACTACAGCAGCAACCCGGAAGCCACCCTCAT
CACGGCCCTCAACACCTGGAGCATGAGCGTCATGATGGCTGAGAGCTTCC
ACGCGGTGCGTTCAATTGTGTTGTTGGTGTTGGTGTACGAGGATCTCAGC
TCGAAGCGACTGCTGGTGATGGAGCGCCTGAAGGGCGTGGCTCTCACCGA
CCTCGAGGGCATCAAGGACTACAGCAGCAACCCGGAAGCCACCCTCATCA
CGGCCCTCAACACCTGGAGCATGAGCGTCATGATGGCTGAGAGCTTCCAC
GCGGTGCGTTCAATTGTGTTGTTGGTGTTG
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