mRNA_E-fasciculatus_F_contig11040.840.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11040.840.1
Unique NamemRNA_E-fasciculatus_F_contig11040.840.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig11040.840.1 vs. uniprot
Match: D7FRZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.870e-33
Identity = 62/79 (78.48%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    1 PPFCPCERTSMVLYRLGHGAGVRPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFL-RWPTRNEQDSISDAFERRTGFR 234
            P F PCERT+MVLYRLGHGAG R TAALFGVSDGWV+SCT EFI RV A L P+FL  WPTRN+QD+IS AFERRTGFR
Sbjct:   71 PAFHPCERTAMVLYRLGHGAGARATAALFGVSDGWVTSCTCEFITRVTARLIPRFLWSWPTRNDQDNISAAFERRTGFR 149          
BLAST of mRNA_E-fasciculatus_F_contig11040.840.1 vs. uniprot
Match: A0A6H5JA50_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA50_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.290e-30
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    1 PPFCPCERTSMVLYRLGHGAGVRPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWPTRNEQDSISDAFERRTGFRDAMAAMDGSHIPVPSPSERDRGAYYNYKGFYSVILLAIV 351
            P   PCER ++ L+R+GHG+GVR TA+ F +++G V + T    +R+   L  +++RWP+  EQ  IS A+E+    R  +  +DGSHI +P+P+E  + AYYNYK FYS+ILLAIV
Sbjct:   36 PYIDPCERVAVFLFRVGHGSGVRATASHFNMAEGAVVNWTMSVARRIRKRLLCEYVRWPSPEEQSEISTAWEKEKSLRKVVGGIDGSHIKIPAPTEHQQLAYYNYKKFYSIILLAIV 152          
BLAST of mRNA_E-fasciculatus_F_contig11040.840.1 vs. uniprot
Match: A0A6H5JSG7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG7_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.180e-25
Identity = 54/117 (46.15%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    1 PPFCPCERTSMVLYRLGHGAGVRPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWPTRNEQDSISDAFERRTGFRDAMAAMDGSHIPVPSPSERDRGAYYNYKGFYSVILLAIV 351
            PPF PCER ++ ++RLG  + VR TA  FG+SDG VS  T E  +RV   L  + + WP+  EQ  +S A+E     R  + A+DGSHI + +P +  + +YYNYK FYS+ LLAIV
Sbjct:    9 PPFDPCERVAVFMWRLGGDSTVRQTALQFGLSDGTVSQVTLEVARRVDKYLRDECVWWPSPEEQRDMSAAWELEKHLRGVIGAIDGSHIKILAPPDSLQTSYYNYKHFYSISLLAIV 125          
BLAST of mRNA_E-fasciculatus_F_contig11040.840.1 vs. uniprot
Match: A0A1E1XA83_9ACAR (Putative transposase (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1XA83_9ACAR)

HSP 1 Score: 83.6 bits (205), Expect = 1.630e-16
Identity = 47/111 (42.34%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   19 ERTSMVLYRLGHGAGVRPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWPTRNEQDSISDAFERRTGFRDAMAAMDGSHIPVPSPSERDRGAYYNYKGFYSVILLAIV 351
            +R ++ LYRL   A  R  A LFGVS   V+   +EF   +   L P+ +R+P+ N        FE  TGF     A+DG HI V  P E  +  YYNYKG+YS+ILLA+V
Sbjct:  107 QRVALSLYRLATSAEERTVAHLFGVSRPSVNIIFREFCDVIVDVLEPQVVRFPSLNNVRDHVRQFEACTGFPQGFGALDGCHIKVSPPKENAQD-YYNYKGWYSIILLAVV 216          
BLAST of mRNA_E-fasciculatus_F_contig11040.840.1 vs. uniprot
Match: UPI001889A618 (uncharacterized protein LOC119186492 n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI001889A618)

HSP 1 Score: 79.7 bits (195), Expect = 4.880e-16
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 1
Query:   13 PCERTSMVLYRLGHGAGVRPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWPTRNEQDSISDAFERRTGFRDAMAAMDGSHIPVPSPSERDRGAYYNYKGFYSVILLAIV 351
            P +R  + LY+L   A  R  A LF V    V++  ++F + V   L  ++++  T  E       FE  TGFR  + A+DG H P+  P E     YYNYKG+YS+ILLA+V
Sbjct:    7 PEKRVGIALYKLCSSAEDRTVANLFAVGRSTVNTLYRQFCEAVVTVLEHEWIKMVTTEEMARHIQEFEAVTGFRQGVGALDGCHFPISPPKEHATD-YYNYKGWYSIILLALV 118          
BLAST of mRNA_E-fasciculatus_F_contig11040.840.1 vs. uniprot
Match: UPI001176274E (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like n=1 Tax=Myripristis murdjan TaxID=586833 RepID=UPI001176274E)

HSP 1 Score: 79.3 bits (194), Expect = 1.200e-15
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   19 ERTSMVLYRLGHGAGVRPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWPTRNEQDSISDAFERRTGFRDAMAAMDGSHIPVPSPSERDRGAYYNYKGFYSVILLAIV 351
            +R ++ +++L   A  R  A LFGVS      C K F   V   L P+ +++P  +E   +++ FE R G    + A+DGSHIP+ +P E     YYN KG+YS++L A+V
Sbjct:   16 QRVAIAVWKLATNADYRSIAHLFGVSRLIACKCLKAFCSAVEDILLPEAIQFPNADEPQEMANYFENRWGLPHCVGAIDGSHIPILAPQEYHT-EYYNRKGWYSIVLQAVV 125          
BLAST of mRNA_E-fasciculatus_F_contig11040.840.1 vs. uniprot
Match: UPI001887926C (uncharacterized protein LOC119185156 n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI001887926C)

HSP 1 Score: 78.2 bits (191), Expect = 1.260e-15
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   13 PCERTSMVLYRLGHGAGVRPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWPTRNEQDSISDAFERRTGFRDAMAAMDGSHIPVPSPSERDRGAYYNYKGFYSVILLAIV 351
            P +R  + LY L   A  R  A LFGV    V++  ++F + V A L  + ++  T  E       FE  TGFR  + A+DG H P+ SP +     YYNY+G+YS+ILLA+V
Sbjct:    7 PEKRVGIALYNLCSSAEDRTVANLFGVGRSTVNTLYRQFCEAVVAVLEHECIKMVTAEETARHIQEFEAVTGFRQGVGALDGCHFPI-SPPKGHVTDYYNYRGWYSIILLALV 118          
BLAST of mRNA_E-fasciculatus_F_contig11040.840.1 vs. uniprot
Match: A0A6P7VV54_IXOSC (uncharacterized protein LOC115325516 n=2 Tax=Ixodes TaxID=6944 RepID=A0A6P7VV54_IXOSC)

HSP 1 Score: 79.7 bits (195), Expect = 2.200e-15
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   19 ERTSMVLYRLGHGAGVRPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWPTRNEQDSISDAFERRTGFRDAMAAMDGSHIPVPSPSERDRGAYYNYKGFYSVILLAIV 351
            +R ++ +YRL   A  R    LFGVS   VS   +EF   + + L P+F+R+P  ++ +     F   TGF   + A+DG HI +  P E     Y+NYKG+YS+ILLA+V
Sbjct:   16 KRVAIGMYRLATSAEDRTVGNLFGVSRSSVSMIFREFCDVILSELEPRFVRFPKPDQLEDHMQRFTAVTGFPQGVGALDGCHIEICPPKEY-ASDYHNYKGWYSMILLAVV 125          
BLAST of mRNA_E-fasciculatus_F_contig11040.840.1 vs. uniprot
Match: A0A0K8TKD6_TABBR (Putative nuclease harbi1-like isoform x1 (Fragment) n=1 Tax=Tabanus bromius TaxID=304241 RepID=A0A0K8TKD6_TABBR)

HSP 1 Score: 77.8 bits (190), Expect = 2.290e-15
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   19 ERTSMVLYRLGHGAGVRPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLR-WPTRNEQ-DSISDAFERRTGFRDAMAAMDGSHIPVPSPSERDRGAYYNYKGFYSVILLA 345
            +R ++ LY +G  +  R    LFG+    V     EF + V  T  PKFL  +P   E+   I D FE + GF     A+DG+HI +  P E     Y+NYKG+YS++LLA
Sbjct:   54 KRVAVALYAIGSSSEYRTVGNLFGIGRTTVGEIVNEFCEAVWTTFQPKFLSTFPANQEKVKDIVDGFESKWGFPQCFGAVDGTHIEIQPPKEHATD-YFNYKGWYSIVLLA 163          
BLAST of mRNA_E-fasciculatus_F_contig11040.840.1 vs. uniprot
Match: UPI00189582D0 (uncharacterized protein LOC119381191 n=2 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI00189582D0)

HSP 1 Score: 79.7 bits (195), Expect = 4.530e-15
Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    1 PPFCPCERTSMVLYRLGHGAGVRPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWPTRNEQDSISDAFERRTGFRDAMAAMDGSHIPVPSPSERDRGAYYNYKGFYSVILLAIV 351
            P     +R ++ LYRL   A     A LFGV    V+   +EF   V  TL  ++LR   R E       F R +GF  A+ A+DG HIPV SP E     Y+NYKG+YS+ILLA+V
Sbjct:  138 PAVSVAKRIAIGLYRLRSTAEDATIAHLFGVGRSTVNVICREFFAAVIKTLEGQWLRMIRRAEMGEHIRKFHRVSGFPQAIGALDGCHIPV-SPPEEHATDYFNYKGWYSMILLALV 253          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11040.840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRZ1_ECTSI2.870e-3378.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA50_9PHAE1.290e-3046.15DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JSG7_9PHAE3.180e-2546.15DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A1E1XA83_9ACAR1.630e-1642.34Putative transposase (Fragment) n=1 Tax=Amblyomma ... [more]
UPI001889A6184.880e-1638.05uncharacterized protein LOC119186492 n=1 Tax=Rhipi... [more]
UPI001176274E1.200e-1536.94protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN... [more]
UPI001887926C1.260e-1538.94uncharacterized protein LOC119185156 n=1 Tax=Rhipi... [more]
A0A6P7VV54_IXOSC2.200e-1538.74uncharacterized protein LOC115325516 n=2 Tax=Ixode... [more]
A0A0K8TKD6_TABBR2.290e-1537.84Putative nuclease harbi1-like isoform x1 (Fragment... [more]
UPI00189582D04.530e-1541.88uncharacterized protein LOC119381191 n=2 Tax=Rhipi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11040contigE-fasciculatus_F_contig11040:2267..2938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.6
Seed ortholog evalue6.5e-11
Seed eggNOG ortholog8090.ENSORLP00000000333
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs38NKY@33154,3BK0T@33208,3D11T@33213,488QT@7711,KOG4585@1,KOG4585@2759
COG Functional cat.L
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11040.840.1prot_E-fasciculatus_F_contig11040.840.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11040 2267..2908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927609.9389675-CDS-E-fasciculatus_F_contig11040:2266..23841622927609.9389675-CDS-E-fasciculatus_F_contig11040:2266..2384Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11040 2267..2384 -
1695995617.8831217-CDS-E-fasciculatus_F_contig11040:2266..23841695995617.8831217-CDS-E-fasciculatus_F_contig11040:2266..2384Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11040 2267..2384 -
1622927609.9578621-CDS-E-fasciculatus_F_contig11040:2705..29081622927609.9578621-CDS-E-fasciculatus_F_contig11040:2705..2908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11040 2706..2908 -
1695995617.8951678-CDS-E-fasciculatus_F_contig11040:2705..29081695995617.8951678-CDS-E-fasciculatus_F_contig11040:2705..2908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11040 2706..2908 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927609.9718413-UTR-E-fasciculatus_F_contig11040:2908..29381622927609.9718413-UTR-E-fasciculatus_F_contig11040:2908..2938Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11040 2909..2938 -
1695995617.904551-UTR-E-fasciculatus_F_contig11040:2908..29381695995617.904551-UTR-E-fasciculatus_F_contig11040:2908..2938Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11040 2909..2938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11040.840.1

>prot_E-fasciculatus_F_contig11040.840.1 ID=prot_E-fasciculatus_F_contig11040.840.1|Name=mRNA_E-fasciculatus_F_contig11040.840.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
MVLYRLGHGAGVRPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWPT
RNEQDSISDAFERRTGFRDAMAAMDGSHIPVPSPSERDRGAYYNYKGFYS
VILLAIV
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mRNA from alignment at E-fasciculatus_F_contig11040:2267..2938-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11040.840.1 ID=mRNA_E-fasciculatus_F_contig11040.840.1|Name=mRNA_E-fasciculatus_F_contig11040.840.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11040:2267..2938- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCCGTTCTGCCCCTGTGAACGAACTTCCATGGTTCTCTATCGTCTTGG ACACGGGGCAGGTGTACGTCCGACGGCCGCGCTTTTCGGGGTCTCTGATG GGTGGGTATCAAGCTGTACGAAAGAATTCATCAAAAGGGTTTGCGCCACT CTTACTCCGAAGTTCTTGCGGTGGCCTACCAGGAACGAGCAAGACAGCAT CTCGGACGCTTTCGAGAGACGTACAGGCTTCAGGTAATGACCGGGCCTCA GTAAGGTTTGCGAAGTGGTGCCTCTGATTGTTATTTTTTTTTTTAATTTC GTCGTTGTGTTTCACAGACCGGCGCAACGAAGCCCTTGTGCTACAAGCCA AGACTCCTTAACGCAGCACGAGAGAAATAAGTAAACATCAACAGGCAAGA AAACGCTTTGATATGCGCCAAACTCCCCCACGTTCTGTGCGTCACATGGG TCCCAACCTCGCTGAAAATATTATACCCGGCTCATGATAACGCACCTCAA AGCTGTTCCCGTGTCCTTTTGTTATCTCCCGTATCTAATATATGGTCTGT CTAGGGATGCCATGGCGGCGATGGATGGCAGTCATATCCCTGTACCGTCA CCGTCAGAACGTGACAGGGGTGCCTACTACAATTACAAGGGCTTTTACTC CGTCATCCTACTAGCTATCGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11040:2267..2938-

>mRNA_E-fasciculatus_F_contig11040.840.1 ID=mRNA_E-fasciculatus_F_contig11040.840.1|Name=mRNA_E-fasciculatus_F_contig11040.840.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11040:2267..2938- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCTCTATCGTCTTGGACACGGGGCAGGTGTACGTCCGACGGCCGC
GCTTTTCGGGGTCTCTGATGGGTGGGTATCAAGCTGTACGAAAGAATTCA
TCAAAAGGGTTTGCGCCACTCTTACTCCGAAGTTCTTGCGGTGGCCTACC
AGGAACGAGCAAGACAGCATCTCGGACGCTTTCGAGAGACGTACAGGCTT
CAGATGGTTCTCTATCGTCTTGGACACGGGGCAGGTGTACGTCCGACGGC
CGCGCTTTTCGGGGTCTCTGATGGGTGGGTATCAAGCTGTACGAAAGAAT
TCATCAAAAGGGTTTGCGCCACTCTTACTCCGAAGTTCTTGCGGTGGCCT
ACCAGGAACGAGCAAGACAGCATCTCGGACGCTTTCGAGAGACGTACAGG
CTTCAGGGATGCCATGGCGGCGATGGATGGCAGTCATATCCCTGTACCGT
CACCGTCAGAACGTGACAGGGGTGCCTACTACAATTACAAGGGCTTTTAC
TCCGTCATCCTACTAGCTATCGTCGGATGCCATGGCGGCGATGGATGGCA
GTCATATCCCTGTACCGTCACCGTCAGAACGTGACAGGGGTGCCTACTAC
AATTACAAGGGCTTTTACTCCGTCATCCTACTAGCTATCGTC
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