mRNA_E-fasciculatus_F_contig11029.828.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11029.828.1
Unique NamemRNA_E-fasciculatus_F_contig11029.828.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11029.828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11029contigE-fasciculatus_F_contig11029:2341..2711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size371
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11029.828.1prot_E-fasciculatus_F_contig11029.828.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11029 2348..2656 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927605.6930451-UTR-E-fasciculatus_F_contig11029:2340..23471622927605.6930451-UTR-E-fasciculatus_F_contig11029:2340..2347Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11029 2341..2347 +
1695995617.0505-UTR-E-fasciculatus_F_contig11029:2340..23471695995617.0505-UTR-E-fasciculatus_F_contig11029:2340..2347Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11029 2341..2347 +
1622927605.7495003-UTR-E-fasciculatus_F_contig11029:2656..27111622927605.7495003-UTR-E-fasciculatus_F_contig11029:2656..2711Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11029 2657..2711 +
1695995617.073064-UTR-E-fasciculatus_F_contig11029:2656..27111695995617.073064-UTR-E-fasciculatus_F_contig11029:2656..2711Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11029 2657..2711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927605.7096202-CDS-E-fasciculatus_F_contig11029:2347..26561622927605.7096202-CDS-E-fasciculatus_F_contig11029:2347..2656Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11029 2348..2656 +
1695995617.062274-CDS-E-fasciculatus_F_contig11029:2347..26561695995617.062274-CDS-E-fasciculatus_F_contig11029:2347..2656Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11029 2348..2656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11029.828.1

>prot_E-fasciculatus_F_contig11029.828.1 ID=prot_E-fasciculatus_F_contig11029.828.1|Name=mRNA_E-fasciculatus_F_contig11029.828.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=103bp
MDVTQTREALVVNKVREPLCCNREREGGKPMLCSDASRVFDLPPYTMGEA
TPIPRALMKQYFPANDNDSPIIHRSHPPHPGCPAFPRNVSKTFLQEKRAI
PT*
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mRNA from alignment at E-fasciculatus_F_contig11029:2341..2711+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11029.828.1 ID=mRNA_E-fasciculatus_F_contig11029.828.1|Name=mRNA_E-fasciculatus_F_contig11029.828.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=371bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11029:2341..2711+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTATGATATGGATGTGACACAAACGCGGGAGGCACTTGTTGTGAACAAGG
TTCGAGAGCCACTCTGCTGCAATCGGGAACGAGAGGGGGGAAAGCCTATG
CTATGTAGCGACGCATCCCGTGTGTTTGATCTACCGCCGTACACAATGGG
CGAAGCAACCCCAATTCCCCGCGCCCTAATGAAACAATATTTTCCAGCAA
ATGACAACGATTCGCCTATTATCCACAGAAGCCACCCCCCCCACCCCGGG
TGTCCGGCGTTCCCACGCAACGTATCTAAGACGTTCTTGCAAGAGAAAAG
AGCAATTCCAACCTAGTCCAACCTAGCGAAAAAAACTCGCGCACCCGTGA
TGTCGTTGTACAGCAGGCCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11029:2341..2711+

>mRNA_E-fasciculatus_F_contig11029.828.1 ID=mRNA_E-fasciculatus_F_contig11029.828.1|Name=mRNA_E-fasciculatus_F_contig11029.828.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11029:2341..2711+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATGTGACACAAACGCGGGAGGCACTTGTTGTGAACAAGGTTCGAGA
GCCACTCTGCTGCAATCGGGAACGAGAGGGGGGAAAGCCTATGCTATGTA
GCGACGCATCCCGTGTGTTTGATCTACCGCCGTACACAATGGGCGAAGCA
ACCCCAATTCCCCGCGCCCTAATGAAACAATATTTTCCAGCAAATGACAA
CGATTCGCCTATTATCCACAGAAGCCACCCCCCCCACCCCGGGTGTCCGG
CGTTCCCACGCAACGTATCTAAGACGTTCTTGCAAGAGAAAAGAGCAATT
CCAACCTAGATGGATGTGACACAAACGCGGGAGGCACTTGTTGTGAACAA
GGTTCGAGAGCCACTCTGCTGCAATCGGGAACGAGAGGGGGGAAAGCCTA
TGCTATGTAGCGACGCATCCCGTGTGTTTGATCTACCGCCGTACACAATG
GGCGAAGCAACCCCAATTCCCCGCGCCCTAATGAAACAATATTTTCCAGC
AAATGACAACGATTCGCCTATTATCCACAGAAGCCACCCCCCCCACCCCG
GGTGTCCGGCGTTCCCACGCAACGTATCTAAGACGTTCTTGCAAGAGAAA
AGAGCAATTCCAACCTAG
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