mRNA_E-fasciculatus_F_contig1100.808.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1100.808.1
Unique NamemRNA_E-fasciculatus_F_contig1100.808.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1100.808.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.230e-49
Identity = 107/134 (79.85%), Postives = 110/134 (82.09%), Query Frame = 3 
Query:    3 EDGMPAAAAAAAE-ESGSLFELRDALRSREEDLLRLKRDVSVVTTSARGFQHLSASLGSGNGERSSSFAFQRIRSHGKDAGGANTD-SDLQSRNGSAFLGAGSDGGRASGAGVDNVNEEAFRPHRTEHGGAVGG 398
            EDGMPAA       ESG LFELRDALRSREEDLLRLKRDVSVV TSARGF+HLSASLGSGN ERSSSF+FQR R HGKDA GANTD SDL S NGSAF G GSDG RA GAGVD +NEEAFRPH   HGGAVGG
Sbjct:  337 EDGMPAAXXXXXXAESGPLFELRDALRSREEDLLRLKRDVSVVATSARGFRHLSASLGSGNVERSSSFSFQRSRGHGKDASGANTDDSDLPSGNGSAFRGGGSDGSRAGGAGVDKINEEAFRPH---HGGAVGG 467
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1100.808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEF4_ECTSI1.230e-4979.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1100contigE-fasciculatus_F_contig1100:9494..9891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002080.1
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927603.386934-UTR-E-fasciculatus_F_contig1100:9493..95041622927603.386934-UTR-E-fasciculatus_F_contig1100:9493..9504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1100 9494..9504 +
1695995615.8294187-UTR-E-fasciculatus_F_contig1100:9493..95041695995615.8294187-UTR-E-fasciculatus_F_contig1100:9493..9504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1100 9494..9504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927603.4023645-CDS-E-fasciculatus_F_contig1100:9504..98911622927603.4023645-CDS-E-fasciculatus_F_contig1100:9504..9891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1100 9505..9891 +
1695995615.8386824-CDS-E-fasciculatus_F_contig1100:9504..98911695995615.8386824-CDS-E-fasciculatus_F_contig1100:9504..9891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1100 9505..9891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1100.808.1prot_E-fasciculatus_F_contig1100.808.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1100 9505..9891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1100.808.1

>prot_E-fasciculatus_F_contig1100.808.1 ID=prot_E-fasciculatus_F_contig1100.808.1|Name=mRNA_E-fasciculatus_F_contig1100.808.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=129bp
MPAAAAAAAEESGSLFELRDALRSREEDLLRLKRDVSVVTTSARGFQHLS
ASLGSGNGERSSSFAFQRIRSHGKDAGGANTDSDLQSRNGSAFLGAGSDG
GRASGAGVDNVNEEAFRPHRTEHGGAVGG
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mRNA from alignment at E-fasciculatus_F_contig1100:9494..9891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1100.808.1 ID=mRNA_E-fasciculatus_F_contig1100.808.1|Name=mRNA_E-fasciculatus_F_contig1100.808.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=398bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1100:9494..9891+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAGGACGGGATGCCGGCGGCGGCGGCGGCGGCGGCGGAGGAGTCGGGC
TCTTTGTTCGAGCTGCGGGATGCGCTGAGGTCGAGGGAGGAAGACCTCCT
CCGGCTCAAGCGGGACGTTTCCGTCGTCACCACAAGCGCAAGGGGTTTCC
AGCACCTTTCCGCGTCTCTGGGGAGCGGCAACGGAGAAAGGAGCTCGTCG
TTCGCGTTCCAGCGTATCCGCAGCCACGGCAAGGATGCAGGCGGCGCGAA
CACAGACAGCGACTTGCAATCGCGCAATGGGAGTGCTTTTCTTGGTGCGG
GTTCCGACGGAGGCCGTGCGAGCGGTGCCGGCGTTGACAATGTCAACGAG
GAGGCGTTTCGGCCCCACCGCACGGAGCACGGCGGGGCTGTCGGCGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1100:9494..9891+

>mRNA_E-fasciculatus_F_contig1100.808.1 ID=mRNA_E-fasciculatus_F_contig1100.808.1|Name=mRNA_E-fasciculatus_F_contig1100.808.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=774bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1100:9494..9891+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGGCGGCGGCGGCGGCGGCGGCGGAGGAGTCGGGCTCTTTGTTCGA
GCTGCGGGATGCGCTGAGGTCGAGGGAGGAAGACCTCCTCCGGCTCAAGC
GGGACGTTTCCGTCGTCACCACAAGCGCAAGGGGTTTCCAGCACCTTTCC
GCGTCTCTGGGGAGCGGCAACGGAGAAAGGAGCTCGTCGTTCGCGTTCCA
GCGTATCCGCAGCCACGGCAAGGATGCAGGCGGCGCGAACACAGACAGCG
ACTTGCAATCGCGCAATGGGAGTGCTTTTCTTGGTGCGGGTTCCGACGGA
GGCCGTGCGAGCGGTGCCGGCGTTGACAATGTCAACGAGGAGGCGTTTCG
GCCCCACCGCACGGAGCACGGCGGGGCTGTCGGCGGGATGCCGGCGGCGG
CGGCGGCGGCGGCGGAGGAGTCGGGCTCTTTGTTCGAGCTGCGGGATGCG
CTGAGGTCGAGGGAGGAAGACCTCCTCCGGCTCAAGCGGGACGTTTCCGT
CGTCACCACAAGCGCAAGGGGTTTCCAGCACCTTTCCGCGTCTCTGGGGA
GCGGCAACGGAGAAAGGAGCTCGTCGTTCGCGTTCCAGCGTATCCGCAGC
CACGGCAAGGATGCAGGCGGCGCGAACACAGACAGCGACTTGCAATCGCG
CAATGGGAGTGCTTTTCTTGGTGCGGGTTCCGACGGAGGCCGTGCGAGCG
GTGCCGGCGTTGACAATGTCAACGAGGAGGCGTTTCGGCCCCACCGCACG
GAGCACGGCGGGGCTGTCGGCGGG
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