mRNA_E-fasciculatus_F_contig110.805.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig110.805.1
Unique NamemRNA_E-fasciculatus_F_contig110.805.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig110.805.1 vs. uniprot
Match: D8LMU3_ECTSI (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU3_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 9.550e-7
Identity = 35/65 (53.85%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:  352 LSPDSFTQWLGVLEIDPSPHPQXXXXXXXRGGGRVPEGMEESFEPTNLVRHESLPDLHLNARCLK 546
            +S DS  Q L  LE +P    Q XXX   R GGR    +EE+F+   LVRHESLP LHLNARC+K
Sbjct:    1 MSLDSSPQPLDELEGEPEQ--QEXXXQLSRAGGRGRRDLEEAFKAPGLVRHESLPSLHLNARCIK 63
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig110.805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMU3_ECTSI9.550e-753.85Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig110contigE-fasciculatus_F_contig110:26104..27413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size550
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig110.805.1prot_E-fasciculatus_F_contig110.805.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig110 26166..27255 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927602.4042516-UTR-E-fasciculatus_F_contig110:26103..261651622927602.4042516-UTR-E-fasciculatus_F_contig110:26103..26165Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig110 26104..26165 +
1695995615.3431716-UTR-E-fasciculatus_F_contig110:26103..261651695995615.3431716-UTR-E-fasciculatus_F_contig110:26103..26165Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig110 26104..26165 +
1622927602.448525-UTR-E-fasciculatus_F_contig110:27255..274131622927602.448525-UTR-E-fasciculatus_F_contig110:27255..27413Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig110 27256..27413 +
1695995615.3760726-UTR-E-fasciculatus_F_contig110:27255..274131695995615.3760726-UTR-E-fasciculatus_F_contig110:27255..27413Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig110 27256..27413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927602.4195435-CDS-E-fasciculatus_F_contig110:26165..264441622927602.4195435-CDS-E-fasciculatus_F_contig110:26165..26444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig110 26166..26444 +
1695995615.3577087-CDS-E-fasciculatus_F_contig110:26165..264441695995615.3577087-CDS-E-fasciculatus_F_contig110:26165..26444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig110 26166..26444 +
1622927602.4322867-CDS-E-fasciculatus_F_contig110:27204..272551622927602.4322867-CDS-E-fasciculatus_F_contig110:27204..27255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig110 27205..27255 +
1695995615.3674765-CDS-E-fasciculatus_F_contig110:27204..272551695995615.3674765-CDS-E-fasciculatus_F_contig110:27204..27255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig110 27205..27255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig110.805.1

>prot_E-fasciculatus_F_contig110.805.1 ID=prot_E-fasciculatus_F_contig110.805.1|Name=mRNA_E-fasciculatus_F_contig110.805.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp
MRTTIGWAREKQFITAGVDLREVASVVPGYPEDKEEGRVPTGATKPFSVA
GTQQQAVFILRPGTADFHEKSSGDGDKTHSIILGRRYRMGPPEARVPVAR
QLYTVARCA*
back to top

mRNA from alignment at E-fasciculatus_F_contig110:26104..27413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig110.805.1 ID=mRNA_E-fasciculatus_F_contig110.805.1|Name=mRNA_E-fasciculatus_F_contig110.805.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1310bp|location=Sequence derived from alignment at E-fasciculatus_F_contig110:26104..27413+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCATTGTTCTGGTGTTGGAGTGAAGAGCACTCTGTACGTATCATTGTA
CATACAAGGCGCATGCGCACCACCATCGGTTGGGCCAGGGAAAAGCAATT
CATTACTGCTGGTGTAGACTTGAGGGAGGTGGCAAGCGTTGTTCCTGGTT
ACCCAGAAGACAAGGAAGAGGGCCGCGTGCCGACGGGCGCAACAAAGCCT
TTCTCTGTGGCTGGGACACAGCAGCAGGCGGTGTTTATCCTTCGACCGGG
GACGGCAGATTTCCATGAAAAGAGTTCTGGTGATGGCGACAAGACGCATT
CGATCATCCTCGGACGGCGATATCGGATGGGCCCCCCAGAGGTATGCATT
CTACCGAAGCGGTTATTGTGTCACGTGCTGACTCAGCTACAACTACCAAA
GTCAACCAGGGCTAGGCTGGAGCAGGACCTCTCACTGAGCCTGAACCGCG
TACTCCTTTGCTTGCCCGCTGCAACGGTGACACCCTTCTCGTACCAAGGG
AGGCGCATTGTTGGGCACTGCATTCTTTTTTTTTTTCTGGGTGCACAGAT
GAGGAGACAAGCGCAGCAGCGTCGTTTTTGTTTTTTCTTCTGTTTTTTCA
TGTGTAGTCTAACAGTTGTTGAAGGTGAAGAAGCGTGGCCCGGGTAGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTCTTCATTAACCTGCACTATTGTGAT
AGAAGCGCTAATTATGCTAACGCATACACCATACTACCAGTGCACAGCAA
TTTTACAGTTTTATGCTGCAAGAGGCAGCGCTGCCTTGACCAATCCACCC
TCGAATCTCACAGGCGGATGGGGGGGGCATGCAGCGGCTAGCCTTGTGTT
GGACCCCGTCTACCAGAGGTTGCGAGGTCAAGGACAGACGTCATGGACTA
TTGTCTTATTGGTTTTTGGTCAAGCTCGCTTTCTCTGGATGCTTTCTTGA
GGTTCTTCGCCCTTCTTTTCCTTCCGTTGTTTCCAACGTTGAGAAAGCTG
CACGCTATCCTTACCTGCCCGACGTTCTCGTACACCCAAGCGCCCCCTCG
TGCCGCCATCTCGGGCCGCCGCGCACTGCGTCTTTCGCTTGTGCATTACA
GGCCAGGGTGCCTGTCGCCAGACAGCTTTACACAGTGGCTCGGTGTGCTT
GAAATAGACCCGTCACCGCATCCGCAGCAGCAGGAGCAGCAGCAGCGCAG
GGGGGGGGGGCGTGTACCAGAGGGCATGGAGGAGTCGTTTGAACCAACAA
ACTTGGTCAGGCATGAGTCTTTACCGGATCTTCACCTCAACGCGCGTTGT
CTCAAGGGTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig110:26104..27413+

>mRNA_E-fasciculatus_F_contig110.805.1 ID=mRNA_E-fasciculatus_F_contig110.805.1|Name=mRNA_E-fasciculatus_F_contig110.805.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig110:26104..27413+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCACCACCATCGGTTGGGCCAGGGAAAAGCAATTCATTACTGCTGG
TGTAGACTTGAGGGAGGTGGCAAGCGTTGTTCCTGGTTACCCAGAAGACA
AGGAAGAGGGCCGCGTGCCGACGGGCGCAACAAAGCCTTTCTCTGTGGCT
GGGACACAGCAGCAGGCGGTGTTTATCCTTCGACCGGGGACGGCAGATTT
CCATGAAAAGAGTTCTGGTGATGGCGACAAGACGCATTCGATCATCCTCG
GACGGCGATATCGGATGGGCCCCCCAGAGATGCGCACCACCATCGGTTGG
GCCAGGGAAAAGCAATTCATTACTGCTGGTGTAGACTTGAGGGAGGTGGC
AAGCGTTGTTCCTGGTTACCCAGAAGACAAGGAAGAGGGCCGCGTGCCGA
CGGGCGCAACAAAGCCTTTCTCTGTGGCTGGGACACAGCAGCAGGCGGTG
TTTATCCTTCGACCGGGGACGGCAGATTTCCATGAAAAGAGTTCTGGTGA
TGGCGACAAGACGCATTCGATCATCCTCGGACGGCGATATCGGATGGGCC
CCCCAGAGGCCAGGGTGCCTGTCGCCAGACAGCTTTACACAGTGGCTCGG
TGTGCTTGAGCCAGGGTGCCTGTCGCCAGACAGCTTTACACAGTGGCTCG
GTGTGCTTGA
back to top