mRNA_E-fasciculatus_F_contig11.796.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11.796.1
Unique NamemRNA_E-fasciculatus_F_contig11.796.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11.796.1 vs. uniprot
Match: A0A6H5KKT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpales TaxID=2877 RepID=A0A6H5KKT9_9PHAE)

HSP 1 Score: 421 bits (1081), Expect = 7.750e-144
Identity = 276/306 (90.20%), Postives = 278/306 (90.85%), Query Frame = 1 
Query:    1 QQMVSPVFGSAGPVLTKGVDLDEVFSDCYFAFGGAEGGNSLAPAPGESSNESAGETLDVEGAGSGQGGLXLGAMAAGAQQAGFVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-GQKPSRGIGXXXXXXXXXASAHRGMKRELSDPNLTGAAGWGGRNDMGWGGMGGDARRSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPI 915
            + MVSPVFGSAGP LTKGVDLDEVFSDCYFAFGGAEGG SLA APGESSNESAGE LDVEG GSG+G L L AMAA AQ      XXXXXXXXXXX     XXXXXXXXXXXXXXXXX  GQKPSRGI XXXXXXXXXASAHRGMKRELSD NL GAA WGGRNDMGWGGMGGD RRSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPI
Sbjct:    2 EDMVSPVFGSAGPALTKGVDLDEVFSDCYFAFGGAEGGTSLAAAPGESSNESAGEALDVEGPGSGEGSLGLEAMAARAQXXXXXXXXXXXXXXXXXLTPPGXXXXXXXXXXXXXXXXXXXGQKPSRGIXXXXXXXXXXASAHRGMKRELSDSNLAGAADWGGRNDMGWGGMGGDPRRSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPI 307
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BLAST of mRNA_E-fasciculatus_F_contig11.796.1 vs. uniprot
Match: A0A126X2H4_9PHAE (Putative LOV domain-containing protein n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A126X2H4_9PHAE)

HSP 1 Score: 375 bits (964), Expect = 2.700e-126
Identity = 237/312 (75.96%), Postives = 240/312 (76.92%), Query Frame = 1 
Query:    1 QQMVSPVFGSAGPVLTKGVDLDEVFSDCYFAFGGAEG--GNSLAPAPGESSNESAGETLDVEGAGSGQGGLXLGAMAAGAQQAGFVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQKPSRGIGXXXXXXXXXASAHRGMKRELSDPNLTGAAGWGGRNDMGWGGMGGDARRSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPIVYASQ 930
            + MVSPVFGSAGP LTKGVDLDEVFSDCYFAFGG EG  G SLA APGESSNESAGETLDVEG          GA            XXXXXXXXX                        AGQKPSRGIG         A+AHRGMKRELSDPN+ GAAG  G  D GWGGMGGDARRSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAA VFEKCINEKALVLSGK T SAQPILSDDEEETKEPNCLLLEPDFQLMQALM SQQNFTISDPSMPDNPIVYASQ
Sbjct:    2 EDMVSPVFGSAGPSLTKGVDLDEVFSDCYFAFGGGEGDGGTSLA-APGESSNESAGETLDVEG--------FDGAXXX------XXXXXXXXXXXXAPPAATATPSAAASALGGVAGLDTAGQKPSRGIGIGIGV----ATAHRGMKRELSDPNVAGAAGRDGM-DAGWGGMGGDARRSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAAAVFEKCINEKALVLSGKGTGSAQPILSDDEEETKEPNCLLLEPDFQLMQALMASQQNFTISDPSMPDNPIVYASQ 293
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11.796.1 vs. uniprot
Match: D7FRW8_ECTSI (Aureochrome 4 n=2 Tax=Ectocarpales TaxID=2877 RepID=D7FRW8_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 5.540e-101
Identity = 162/167 (97.01%), Postives = 164/167 (98.20%), Query Frame = 1 
Query:  430 MKRELSDPNLTGAAGWGGRNDMGWGGMGGDARRSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPIVYASQ 930
            MKRELSD NL GAA WGGRNDMGWGG+GGDARRSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEA+TVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPIVYASQ
Sbjct:    1 MKRELSDSNLAGAADWGGRNDMGWGGLGGDARRSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEASTVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPIVYASQ 167
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11.796.1 vs. uniprot
Match: A0A126X320_SARHM (Putative LOV domain-containing protein n=4 Tax=Sargassum TaxID=3015 RepID=A0A126X320_SARHM)

HSP 1 Score: 278 bits (711), Expect = 6.050e-88
Identity = 189/323 (58.51%), Postives = 212/323 (65.63%), Query Frame = 1 
Query:   10 VSPVFGSAGPVLTKGVDLDEVFSDCYFAFGGAE-------GGNSLAPAPGESSNESA-GETLDVEGAGSGQGGLXLG---AMAAGAQQAGFVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQKPSRGIGXXXXXXXXXASA--HRGMKRELSDPNLTGAA--GWGGRNDMGWGGMGGDARRSMSEQQKLERR-ERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPIVYASQ 930
            V+PVFGSAGP + KG+DLDE+FS+ +FAF   E       GG +  P    SSN+SA GE  DVEG G G   L +G   A+ AG ++    A                                 A  + SRGI          ASA  HRG+KRELS+ N+ G       G++   +        RSMSEQQKLERR ERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAA VFEKC NEKALVLSGK+TESAQPI SD+E+ETKEPNCLLLEPDFQLM+ALM SQQNFTISDPSMPDNPIVYASQ
Sbjct:    7 VTPVFGSAGPAVAKGIDLDEMFSE-FFAFSDGEDTTKPIAGGTTRDP----SSNDSASGEPFDVEGFGGGIEELDVGVDPAVGAGEEKIFSAASMSDTSAGTT-----------------------AAGRGSRGISIGIGVAAGAASANQHRGLKRELSESNIAGGTMGSMSGKHGSIYXXXXXXXXRSMSEQQKLERRQERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAAKVFEKCTNEKALVLSGKNTESAQPIQSDEEDETKEPNCLLLEPDFQLMRALMESQQNFTISDPSMPDNPIVYASQ 301
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11.796.1 vs. uniprot
Match: A0A126WWZ7_9PHAE (Putative LOV domain-containing protein n=1 Tax=Sargassum integerrimum TaxID=1159339 RepID=A0A126WWZ7_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 2.750e-85
Identity = 196/317 (61.83%), Postives = 228/317 (71.92%), Query Frame = 1 
Query:   10 VSPVFGSAGPVLTKGVDLDEVFSDCYFAFGGAEGGNSLAP-APGESSNES-AGETLDVEGAGSGQGGLXLG---AMAAGAQQAGFVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQKPSRGIGXXXXXXXXX--ASAHRGMKRELSDPNLTGAAGWGGRNDMGWGG--MGGDARRSMSEQQKLERR-ERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPIVYASQ 930
            V+PVFGSAGP + +G+DLDE+FS+ +FAF  ++G ++  P A G + N+S +GET DVEG GSG   L +G   A+  G ++A                             XXXXX   AG+       XXXXXXXXX  A+ HRG+KRELS+ ++ G     G++   +G   MG  + RSMSEQQKLERR ERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAA VFEKC NEKALVLSGK+TESAQPI SD+E+E KEPNCLLLEPDFQLM+ALM SQQNFTISDPSMPDNPIVYASQ
Sbjct:    5 VTPVFGSAGPGVARGIDLDEMFSE-FFAF--SDGEDTTKPTAGGMAGNDSTSGETFDVEGFGSGIDDLDVGIEIAVGTGEEKA-------------------PSSSSVGDTSXXXXXTMAAGRXXXXXXXXXXXXXXXXXXANQHRGVKRELSESSIAGRMSGQGKHGSIYGSRSMGNMSGRSMSEQQKLERRQERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAAKVFEKCTNEKALVLSGKNTESAQPIQSDEEDEAKEPNCLLLEPDFQLMRALMESQQNFTISDPSMPDNPIVYASQ 299
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BLAST of mRNA_E-fasciculatus_F_contig11.796.1 vs. uniprot
Match: A0A126WZ27_9PHAE (Putative LOV domain-containing protein n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A126WZ27_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 1.930e-83
Identity = 188/313 (60.06%), Postives = 208/313 (66.45%), Query Frame = 1 
Query:    4 QMVSPVFGSAGPVLTKGVDLDEVFSDCYFAFGGAEG----GNSLAPAPGESSNESAGETLDVEGAGSGQGGLXLGAMAAGAQQAGFVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQKPSRGIGXXXXXXXXXASAHRGMKRELSDPNLTGAAGWGGRNDMGWGGMGGDARRSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPIVYASQ 930
            Q+V PVFG AGP++ K VDLD+VF+  YFAFG  +G    G  +A    E   E  G  LDVEG GS      LG        AG                                     G +  RGIG XXXXXXXXA A+RG+KRELS+  L G+  +         G+G  A RSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQN+ALRQ+VKE+MP+EAA VFEKCINEKALVLSGK T SAQPI SDDEEE++E NCLLLEPDFQLMQALM SQQNFTISDPSMPDNPIVYASQ
Sbjct:    5 QLVPPVFGPAGPLVNKAVDLDDVFAG-YFAFGDQDGCQLGGKEMAQDSSEGGVE--GPALDVEGFGS------LGTDV----NAGI------------------------GLEPRPPSHTFTGGR--RGIGIXXXXXXXXAGANRGVKRELSETRLGGSFPF---------GVGEAAGRSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNMALRQIVKENMPNEAAAVFEKCINEKALVLSGKGTASAQPIPSDDEEESRESNCLLLEPDFQLMQALMESQQNFTISDPSMPDNPIVYASQ 269
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BLAST of mRNA_E-fasciculatus_F_contig11.796.1 vs. uniprot
Match: A0A126X057_SARFS (Putative LOV domain-containing protein n=1 Tax=Sargassum fusiforme TaxID=590727 RepID=A0A126X057_SARFS)

HSP 1 Score: 234 bits (598), Expect = 7.750e-73
Identity = 130/145 (89.66%), Postives = 136/145 (93.79%), Query Frame = 1 
Query:  499 WGGMGGDARRSMSEQQKLERR-ERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPIVYASQ 930
            +G MG  + RSMSEQQKLERR ERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAA VFEKC NEKALVLSGK+TESAQPI SD+E+ETKEPNCLLLEPDFQLM+ALM SQQNFTISDPSMPDNPIVYASQ
Sbjct:   11 YGTMGNMSGRSMSEQQKLERRQERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAAKVFEKCTNEKALVLSGKNTESAQPIQSDEEDETKEPNCLLLEPDFQLMRALMESQQNFTISDPSMPDNPIVYASQ 155
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BLAST of mRNA_E-fasciculatus_F_contig11.796.1 vs. uniprot
Match: U3M7T2_SACJA (Aureochrome1 (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=U3M7T2_SACJA)

HSP 1 Score: 223 bits (567), Expect = 3.670e-69
Identity = 120/133 (90.23%), Postives = 126/133 (94.74%), Query Frame = 1 
Query:  532 MSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPIVYASQ 930
            MSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQN+ALRQVVKEHMP+EAATVFEKC++EKAL LSGK T SAQ I SDDE+E+KEPNCLLLEPDFQLMQALM SQQNFTISDPSM DNPIVYASQ
Sbjct:    1 MSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNMALRQVVKEHMPNEAATVFEKCVHEKALALSGKGTGSAQAIQSDDEDESKEPNCLLLEPDFQLMQALMESQQNFTISDPSMADNPIVYASQ 133
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11.796.1 vs. uniprot
Match: A0A126X1P8_SACJA (Putative LOV domain-containing protein n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A126X1P8_SACJA)

HSP 1 Score: 179 bits (455), Expect = 5.410e-52
Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 1 
Query:  610 MLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPIVYASQ 930
            MLECLQEQLLAMRKQN+ALRQVVKEHMP+EAATVFEKC++EKAL LSGK T SAQ I SDDE+E+KEPNCLLLEPDFQLMQALM SQQNFTISDPSM DNPIVYASQ
Sbjct:    1 MLECLQEQLLAMRKQNMALRQVVKEHMPNEAATVFEKCVHEKALALSGKGTGSAQAIQSDDEDESKEPNCLLLEPDFQLMQALMESQQNFTISDPSMADNPIVYASQ 107
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11.796.1 vs. uniprot
Match: A0A836CJE1_9STRA (Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJE1_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.770e-48
Identity = 91/139 (65.47%), Postives = 114/139 (82.01%), Query Frame = 1 
Query:  514 GDARRSMSEQQKLERRERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPIVYASQ 930
            G + + +SEQQK+ERRERNREHAKRSR+RKKFMLECLQEQLLA+RK+N+ LRQ V+EHMPD A  +F K ++E+ALVLSG +  + Q       + +++PNCLL+EPDFQL+ ALM SQQNF +SDPS+PDNPIVYASQ
Sbjct:    9 GKSGKDLSEQQKIERRERNREHAKRSRVRKKFMLECLQEQLLALRKENMNLRQAVQEHMPDVATDIFTKVVSERALVLSGDAGSTPQQ----QAQTSRKPNCLLVEPDFQLISALMDSQQNFAVSDPSLPDNPIVYASQ 143
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11.796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKT9_9PHAE7.750e-14490.20Uncharacterized protein n=2 Tax=Ectocarpales TaxID... [more]
A0A126X2H4_9PHAE2.700e-12675.96Putative LOV domain-containing protein n=3 Tax=Scy... [more]
D7FRW8_ECTSI5.540e-10197.01Aureochrome 4 n=2 Tax=Ectocarpales TaxID=2877 RepI... [more]
A0A126X320_SARHM6.050e-8858.51Putative LOV domain-containing protein n=4 Tax=Sar... [more]
A0A126WWZ7_9PHAE2.750e-8561.83Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A126WZ27_9PHAE1.930e-8360.06Putative LOV domain-containing protein n=1 Tax=Dic... [more]
A0A126X057_SARFS7.750e-7389.66Putative LOV domain-containing protein n=1 Tax=Sar... [more]
U3M7T2_SACJA3.670e-6990.23Aureochrome1 (Fragment) n=1 Tax=Saccharina japonic... [more]
A0A126X1P8_SACJA5.410e-5287.85Putative LOV domain-containing protein n=3 Tax=Pha... [more]
A0A836CJE1_9STRA1.770e-4865.47Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11contigE-fasciculatus_F_contig11:122..3802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.1
Seed ortholog evalue3.7e-83
Seed eggNOG ortholog2880.D7FRW8
KEGG koko:K20715
GOsGO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0007623,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009605,GO:0009606,GO:0009628,GO:0009637,GO:0009638,GO:0009657,GO:0009658,GO:0009785,GO:0009881,GO:0009882,GO:0009898,GO:0009902,GO:0009903,GO:0009904,GO:0009986,GO:0009987,GO:0010119,GO:0010155,GO:0010181,GO:0010359,GO:0010360,GO:0010361,GO:0010362,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019750,GO:0022898,GO:0023052,GO:0030522,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032553,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035556,GO:0036094,GO:0036211,GO:0038023,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043271,GO:0043412,GO:0044070,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046777,GO:0048037,GO:0048511,GO:0048519,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051644,GO:0051649,GO:0051656,GO:0051667,GO:0051716,GO:0060089,GO:0065007,GO:0065009,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:0104004,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903792,GO:1903959,GO:1903960,GO:1904062
EggNOG free text desc.negative regulation of anion channel activity by blue light
EggNOG OGs2QPPH@2759,KOG0610@1
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionaureochrome 4
Ec32 orthologEc-03_003420.1
Exons5
Model size930
Cds size924
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11.796.1prot_E-fasciculatus_F_contig11.796.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11 122..3796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927600.681783-CDS-E-fasciculatus_F_contig11:121..2951622927600.681783-CDS-E-fasciculatus_F_contig11:121..295Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11 122..295 -
1695995614.3176978-CDS-E-fasciculatus_F_contig11:121..2951695995614.3176978-CDS-E-fasciculatus_F_contig11:121..295Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11 122..295 -
1622927600.6932554-CDS-E-fasciculatus_F_contig11:1021..11051622927600.6932554-CDS-E-fasciculatus_F_contig11:1021..1105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11 1022..1105 -
1695995614.329528-CDS-E-fasciculatus_F_contig11:1021..11051695995614.329528-CDS-E-fasciculatus_F_contig11:1021..1105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11 1022..1105 -
1622927600.7047577-CDS-E-fasciculatus_F_contig11:1587..16981622927600.7047577-CDS-E-fasciculatus_F_contig11:1587..1698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11 1588..1698 -
1695995614.3385878-CDS-E-fasciculatus_F_contig11:1587..16981695995614.3385878-CDS-E-fasciculatus_F_contig11:1587..1698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11 1588..1698 -
1622927600.7180023-CDS-E-fasciculatus_F_contig11:2146..26281622927600.7180023-CDS-E-fasciculatus_F_contig11:2146..2628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11 2147..2628 -
1695995614.3479674-CDS-E-fasciculatus_F_contig11:2146..26281695995614.3479674-CDS-E-fasciculatus_F_contig11:2146..2628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11 2147..2628 -
1622927600.7314382-CDS-E-fasciculatus_F_contig11:3723..37961622927600.7314382-CDS-E-fasciculatus_F_contig11:3723..3796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11 3724..3796 -
1695995614.3657987-CDS-E-fasciculatus_F_contig11:3723..37961695995614.3657987-CDS-E-fasciculatus_F_contig11:3723..3796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11 3724..3796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927600.7457561-UTR-E-fasciculatus_F_contig11:3796..38021622927600.7457561-UTR-E-fasciculatus_F_contig11:3796..3802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11 3797..3802 -
1695995614.3753011-UTR-E-fasciculatus_F_contig11:3796..38021695995614.3753011-UTR-E-fasciculatus_F_contig11:3796..3802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11 3797..3802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11.796.1

>prot_E-fasciculatus_F_contig11.796.1 ID=prot_E-fasciculatus_F_contig11.796.1|Name=mRNA_E-fasciculatus_F_contig11.796.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=308bp
MVSPVFGSAGPVLTKGVDLDEVFSDCYFAFGGAEGGNSLAPAPGESSNES
AGETLDVEGAGSGQGGLGLGAMAAGAQQAGFVAAAAPPSAAAAAATAAAA
AAAAAAAPGGAGGASAAGQKPSRGIGIGIGVAAGAASAHRGMKRELSDPN
LTGAAGWGGRNDMGWGGMGGDARRSMSEQQKLERRERNREHAKRSRIRKK
FMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGK
STESAQPILSDDEEETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPD
NPIVYASQ
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mRNA from alignment at E-fasciculatus_F_contig11:122..3802-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11.796.1 ID=mRNA_E-fasciculatus_F_contig11.796.1|Name=mRNA_E-fasciculatus_F_contig11.796.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3681bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11:122..3802- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAACAGATGGTGTCTCCGGTGTTTGGGTCAGCGGGCCCTGTGCTGACGAA
AGGAGTCGATCTAGACGAAGTATTCTCAGGTGCGGAACTTGCGTTGCCTA
CAGATTACAGATATGTAATTCCGGTGTACGTGGGTCGAATAGACTGCCGT
AATTGATTGCCTGGCTGACGTTTCGTATGCATACAATATGAGCTGGCTCT
TTGCACTCTTTGCACGTGTGTTTGATGGGCTACTGCTGTATGCATAGAAC
TACTGCTTGTTGCCCGTGATCACGCATGTCTGACTTTAGTCTATTGAACA
AGGCATGGATTACAAGTAAGGGTTGTGGGCATGTCAGGCACCACAGCATG
TAAGTAGACTGGTTGACACCGCCCATCCTTGATTTGGGTCCATCGTCCAT
CACCAAACACGAAAACAGCAGCAGTGGCGGTATGCATTACGACCGTGAGT
ACAGCAGTAGAGGCATGTGTTTGTTCCGGGAGTTATGGGCTTCATGCCAC
TGCTGGTTGCTCTGCGGGCCGAATGTATTTTGAGTTGTAGCATACTTTGG
CAGGCCGAGGTCGCCTCTATCGCGACGGCTAAGGACTCGCACTCGGGAGG
ACAGCTCTAGGTTTTATTATCGGTTGTATGCGTGCAGAGAGTCGTGCGAA
ACAGTAGAGAAGTTGCATTGCACATGCGTCGCGTGTGTTAAGCGTACCAT
CCCATTAGTTCCGGGCGCCAGTTGTTTACACCTTTTTACGCTTTACCCTG
AGTTGTTTTGGACGCAGCAGCCAGGGAAGGCCACGCAGTTTGTTTGTTTC
TCTGTCCACGTTCCCTCTGCGGTGCCTTCCTCATTTTTATCGTTTTGTCG
CGAGAAAGATTAAGATTCAGGCGTTCCTTCCCTCGTCGGTGGTCTTCCTA
CCCTTCCTACCTGTAGTTAATCAACGGCTGTAAGAGCATGACTCGAAGCA
ATTCCGGTCACGCCGGCTCACTGCTGCGAACCAAGTAGCGGGCGGTATTG
GGAGTGTCTCGGGCGGGGTGTTTATCTCCAACGTAATGTACGGAGGCGTG
ATCATACGCATACGAGCGTGATGTGCCGATGTGCCGTAGGCTGTCGCTCG
ATGGGGCTCGGTGGGTCATGTTGTACAGCTGTGACACAAGCCCCAATCAT
CCACGCTCTGGACCTGCAAAACAGACTGCTACTTCGCGTTCGGAGGGGCG
GAGGGGGGCAACTCGCTAGCGCCCGCGCCCGGGGAATCCTCGAACGAAAG
CGCCGGCGAGACGCTTGACGTGGAAGGGGCAGGCAGCGGGCAGGGTGGTC
TTGGGTTGGGGGCTATGGCGGCAGGAGCACAACAAGCAGGATTCGTGGCA
GCAGCAGCACCACCATCAGCGGCAGCAGCAGCGGCGACAGCTGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCACCTGGGGGGGCGGGAGGTGCGAGCGCGG
CGGGGCAGAAGCCTAGCCGCGGGATCGGGATTGGTATTGGCGTGGCCGCT
GGCGCAGCAAGCGCCCACCGTGGCATGAAGCGGGAGCTGAGCGACCCGAA
TCTCACCGGAGCGGCAGGATGGGGCGGTCGGAACGACATGGGCTGGGGCG
GGATGGGAGGAGATGCGCGTAGGTCGATGTCTGAGCAGCAGAAGCTGGAG
AGGAGGGTGAGACTAGAAAGGGAGCGGGCGAAGGAGGGTGTTACACACAC
GGTGTTGCGGTTGTAGGGTTGGGATTTCCGCTAGGTAGCCTTATCGCTCC
CCGCGAACATCAGCGACTTGTAGAGCGGGTAGGCTAACTAGACGTCGGTT
GAATCCGCTGAAACCTCAAATGTGTGTTGACTATAATAGCAGCAGTCCTC
TCTTCCGGGTACGATACACGCGAGCCCGCCGCACGGCTGGGACAAGATAT
GTATCTGGAATTTGTATTTCGCCGATAGTCCGTAGCCGGCCACGTCGGCG
CTGCGTAAGGTGGACCAGAGCGTCAATGAATCACACACCAACCTACCACT
ACGTACGTACATCATGACCCCGTCTCCGAGTTTTTCCTCCGTGTTTTTTC
TCCTTGTGCTCATCCATGCACACACACGCCGCTGACTCCATCACACCCCT
GCAGGAGCGGAACCGTGAGCACGCGAAGCGATCGCGGATTCGCAAGAAGT
TCATGCTGGAATGTCTGCAGGAGCAGCTCCTGGCCATGCGGAAGCAGAAC
CTGGCCCTCAGACAGGTTACTGGAAGTTCCTTATATATCGCACACGCTCA
GCAGTAGTGTGACACGTAGGGGGTAGGCCACACAGGGCTGCCGTCCTGTG
CAAAAGGATCTGCGCTAGTAGGTGAACACACCTCTGCTGCACAAGCCTGG
CCTGGCTGTAAAAACTTTGCATCGTGGGTGCTGTTCGATTGCTTTGAAGT
ATTGACAGACAGTAGCGTAGCTGGTGAGGAGATGGCAGATCGATTGCACT
TGCAGTGTGAAAACGAGCGTTTGTTTCTCAGTGCATCGTGACAGCACTCT
TAGGTATCCTTGAAGATATTCCTGCCGTGACTCTCGTTTGAAGAGCATGC
CTGAACCTTGCGGATCAAACTGTAATACACCCTATCCCATGTAAAACCAT
AATTGAATCCTGGCGCAAGAGATCGTGTGTTCGGTCTGTCTGTCTGTCGA
TGTTTCCCGTCTCATGCATGGTGAATTGCCTTGGCGATCGATCCCAGGTG
GTGAAAGAGCACATGCCTGACGAGGCAGCCACGGTGTTCGAGAAGTGCAT
CAACGAGAAGGCTCTCGTGCTCTCCGGGAAGGTGAAGCCAGTCAGATTAG
ACAACCCCGTCCGTCCGTTGTGTTTAACCCTCCTAGTACTGGAAGCCCTT
TTGGGGACACTTTGGGGACACACAACTCAAAAGCCTATTTACCGCACCGT
AGTCACCCTAGGCACCGCTGTGTCAAACGCACGTGAGAACCCTTGGTCTA
TCGTGCTTGGCTGAGGTAGTATGCTCTGCGATGTGCTGTGTGATGCCTCT
CCTCAGCCTCTGGCTTGCTGTCACCGCCTCCCAAGCCGCGTGTCCCCAAG
GTGGTAAAACTGTACATCGCCTAGAACTGCAAAAATTCGCTGACTTCGCT
TCAGTGTGAAAAGTGTCCCCACGTGTTTTGGAGACACTTTTAATACTGAA
GCCAAGTCACCCTTTGTCTGGCAAGCAGCGGCGATTCTTTGGAGGGACTG
TAACTCCTCGACCAATGGCTGAGAAGCATTTTTGGGACATTTTTTTTTGC
GGCGGACTGGGTACTAGGAGGGTTAACCTCTTTTAGCGAACAATCATTCT
CTAGCGCTGATCTACCCTTCACGCAGTCGGTGCTTGCTCAGCTGATCGTC
TTCAACTTGACACGCAGCAGTGCCCTTTATCCTCCAGTGTCTGTGGAGCC
CAGGCCACAACCTCTCTCATCGTGCAACTGCCCCCCCAAGCACCTACTGC
TACTGTTTCAACATATCTAGAACACACGTCCCTTCGCTTCTGGTTCCTCT
TGTGTAGAGCACGGAATCGGCGCAGCCTATCCTCTCAGACGACGAGGAGG
AGACGAAGGAACCGAACTGCCTCTTGCTGGAGCCGGACTTCCAGCTGATG
CAGGCCCTCATGACGAGCCAGCAGAACTTCACCATCTCGGACCCTAGCAT
GCCGGACAACCCGATCGTATACGCCAGTCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11:122..3802-

>mRNA_E-fasciculatus_F_contig11.796.1 ID=mRNA_E-fasciculatus_F_contig11.796.1|Name=mRNA_E-fasciculatus_F_contig11.796.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1848bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11:122..3802- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGTCTCCGGTGTTTGGGTCAGCGGGCCCTGTGCTGACGAAAGGAGT
CGATCTAGACGAAGTATTCTCAGATGGTGTCTCCGGTGTTTGGGTCAGCG
GGCCCTGTGCTGACGAAAGGAGTCGATCTAGACGAAGTATTCTCAGACTG
CTACTTCGCGTTCGGAGGGGCGGAGGGGGGCAACTCGCTAGCGCCCGCGC
CCGGGGAATCCTCGAACGAAAGCGCCGGCGAGACGCTTGACGTGGAAGGG
GCAGGCAGCGGGCAGGGTGGTCTTGGGTTGGGGGCTATGGCGGCAGGAGC
ACAACAAGCAGGATTCGTGGCAGCAGCAGCACCACCATCAGCGGCAGCAG
CAGCGGCGACAGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCTGGG
GGGGCGGGAGGTGCGAGCGCGGCGGGGCAGAAGCCTAGCCGCGGGATCGG
GATTGGTATTGGCGTGGCCGCTGGCGCAGCAAGCGCCCACCGTGGCATGA
AGCGGGAGCTGAGCGACCCGAATCTCACCGGAGCGGCAGGATGGGGCGGT
CGGAACGACATGGGCTGGGGCGGGATGGGAGGAGATGCGCGTAGGTCGAT
GTCTGAGCAGCAGAAGCTGGAGAGGAGGACTGCTACTTCGCGTTCGGAGG
GGCGGAGGGGGGCAACTCGCTAGCGCCCGCGCCCGGGGAATCCTCGAACG
AAAGCGCCGGCGAGACGCTTGACGTGGAAGGGGCAGGCAGCGGGCAGGGT
GGTCTTGGGTTGGGGGCTATGGCGGCAGGAGCACAACAAGCAGGATTCGT
GGCAGCAGCAGCACCACCATCAGCGGCAGCAGCAGCGGCGACAGCTGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCACCTGGGGGGGCGGGAGGTGCGAGC
GCGGCGGGGCAGAAGCCTAGCCGCGGGATCGGGATTGGTATTGGCGTGGC
CGCTGGCGCAGCAAGCGCCCACCGTGGCATGAAGCGGGAGCTGAGCGACC
CGAATCTCACCGGAGCGGCAGGATGGGGCGGTCGGAACGACATGGGCTGG
GGCGGGATGGGAGGAGATGCGCGTAGGTCGATGTCTGAGCAGCAGAAGCT
GGAGAGGAGGGAGCGGAACCGTGAGCACGCGAAGCGATCGCGGATTCGCA
AGAAGTTCATGCTGGAATGTCTGCAGGAGCAGCTCCTGGCCATGCGGAAG
CAGAACCTGGCCCTCAGACAGGAGCGGAACCGTGAGCACGCGAAGCGATC
GCGGATTCGCAAGAAGTTCATGCTGGAATGTCTGCAGGAGCAGCTCCTGG
CCATGCGGAAGCAGAACCTGGCCCTCAGACAGGTGGTGAAAGAGCACATG
CCTGACGAGGCAGCCACGGTGTTCGAGAAGTGCATCAACGAGAAGGCTCT
CGTGCTCTCCGGGAAGGTGGTGAAAGAGCACATGCCTGACGAGGCAGCCA
CGGTGTTCGAGAAGTGCATCAACGAGAAGGCTCTCGTGCTCTCCGGGAAG
AGCACGGAATCGGCGCAGCCTATCCTCTCAGACGACGAGGAGGAGACGAA
GGAACCGAACTGCCTCTTGCTGGAGCCGGACTTCCAGCTGATGCAGGCCC
TCATGACGAGCCAGCAGAACTTCACCATCTCGGACCCTAGCATGCCGGAC
AACCCGATCGTATACGCCAGTCAGAGCACGGAATCGGCGCAGCCTATCCT
CTCAGACGACGAGGAGGAGACGAAGGAACCGAACTGCCTCTTGCTGGAGC
CGGACTTCCAGCTGATGCAGGCCCTCATGACGAGCCAGCAGAACTTCACC
ATCTCGGACCCTAGCATGCCGGACAACCCGATCGTATACGCCAGTCAG
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