mRNA_E-fasciculatus_F_contig10997.792.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10997.792.1
Unique NamemRNA_E-fasciculatus_F_contig10997.792.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10997.792.1 vs. uniprot
Match: D7FPT4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT4_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.580e-46
Identity = 81/85 (95.29%), Postives = 85/85 (100.00%), Query Frame = 1 
Query:    1 PATAEISLPSLTRLDLNNNILHNLDDLKALWNIAPSLTVLDMRGNPLRAARTYRGAAIRGIPSLELLDGKSVTHREVSLHNACRT 255
            PATA+ISLPSLTRLDLNNNILHNLDDLKALWNIAP+LTVLDMRGNPLRAARTYRGAA+RGIPSLE+LDGKSVTHREVSLHNACRT
Sbjct: 1256 PATADISLPSLTRLDLNNNILHNLDDLKALWNIAPNLTVLDMRGNPLRAARTYRGAAVRGIPSLEVLDGKSVTHREVSLHNACRT 1340
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BLAST of mRNA_E-fasciculatus_F_contig10997.792.1 vs. uniprot
Match: A0A6H5L7J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J2_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.290e-25
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 PATAEISLPSLTRLDLNNNILHNLDDLK----ALWNIAPSLTVLDMRGNPLRAARTYRGAAI 174
            PATA+ISLPSLTRLD NNNILHNLDDLK    ALWNIAP+LTVLDMRGNPLRAARTYRGAAI
Sbjct: 1390 PATADISLPSLTRLDFNNNILHNLDDLKVGGQALWNIAPNLTVLDMRGNPLRAARTYRGAAI 1451
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10997.792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPT4_ECTSI1.580e-4695.29Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5L7J2_9PHAE1.290e-2588.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10997contigE-fasciculatus_F_contig10997:491..2203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue1.7e-39
Seed eggNOG ortholog2880.D7FPT4
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size287
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10997.792.1prot_E-fasciculatus_F_contig10997.792.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10997 493..2203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927600.2556493-CDS-E-fasciculatus_F_contig10997:492..5231622927600.2556493-CDS-E-fasciculatus_F_contig10997:492..523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10997 493..523 -
1695995614.1615844-CDS-E-fasciculatus_F_contig10997:492..5231695995614.1615844-CDS-E-fasciculatus_F_contig10997:492..523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10997 493..523 -
1622927600.2684832-CDS-E-fasciculatus_F_contig10997:1055..11331622927600.2684832-CDS-E-fasciculatus_F_contig10997:1055..1133Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10997 1056..1133 -
1695995614.173075-CDS-E-fasciculatus_F_contig10997:1055..11331695995614.173075-CDS-E-fasciculatus_F_contig10997:1055..1133Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10997 1056..1133 -
1622927600.2795293-CDS-E-fasciculatus_F_contig10997:1596..16881622927600.2795293-CDS-E-fasciculatus_F_contig10997:1596..1688Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10997 1597..1688 -
1695995614.1827905-CDS-E-fasciculatus_F_contig10997:1596..16881695995614.1827905-CDS-E-fasciculatus_F_contig10997:1596..1688Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10997 1597..1688 -
1622927600.2902083-CDS-E-fasciculatus_F_contig10997:2119..22031622927600.2902083-CDS-E-fasciculatus_F_contig10997:2119..2203Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10997 2120..2203 -
1695995614.1922588-CDS-E-fasciculatus_F_contig10997:2119..22031695995614.1922588-CDS-E-fasciculatus_F_contig10997:2119..2203Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10997 2120..2203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10997.792.1

>prot_E-fasciculatus_F_contig10997.792.1 ID=prot_E-fasciculatus_F_contig10997.792.1|Name=mRNA_E-fasciculatus_F_contig10997.792.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=95bp
PATAEISLPSLTRLDLNNNILHNLDDLKALWNIAPSLTVLDMRGNPLRAA
RTYRGAAIRGIPSLELLDGKSVTHREVSLHNACRTLTLDMLRRNG
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mRNA from alignment at E-fasciculatus_F_contig10997:491..2203-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10997.792.1 ID=mRNA_E-fasciculatus_F_contig10997.792.1|Name=mRNA_E-fasciculatus_F_contig10997.792.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1713bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10997:491..2203- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGGCCACGGCGGAGATCTCTCTACCTTCCTTGACGAGGTTGGATCTGAA
CAACAACATCTTGCACAATTTGGATGACCTGAAGGTGGGCGGCGAGGTGG
AGTGCGTGTATTTGGAATCAGGCAGCGAGAACGTGTCGCACGCTTTATGC
GCATGTATGCTGCTCGTTGCAGTCATTTTGTGACAGATGTTTCTTGTACT
GTGATCGCAACGTGCTTGCTTGTCAAACAGTCGGCAACACGCCGTTTGGT
AAGAAAATCTGGCGTTTGATCAATGCCTGGTGTTCGCTCGAAGCACGAGC
AGGTACTTCTCTATCCAATAGAGAGAATTGGAGCCATGGCCGCAGAGGGA
TCCTCCCGTGTCACCCTCAGAAGGAAATACCGTGGGGGTAGTTTTTTGCT
GCAAGCAACGGTATTCGTGGAACGGCCAGATGGGACGGTTAGTCAGATGG
GTCCGATCCGGTTTGGTCTAATCCTCTTCGATGCTCCGTACCACGACACA
ACCCGTAAAACGCAGGCTTTGTGGAACATCGCCCCGTCGTTGACCGTCCT
TGACATGCGGGGGAACCCGCTCAGGGCGGCGAGGACGTACCGAGGCGCGG
CTATCAGGTACGATGCACATCTACAGACTTGTTATTTCGTCGTGCAAGGG
GCGTCTTGGGTCGACCATACAGACCCAAACTCGTTTGCGAAAGAAGGGAC
CGCTTGGAATATCAATTGAGCGTGATTGTGCGCACAAGAACTCCCTGGCA
TGAGACGTGCTGGGATGTGTCATCGCACGTCACTGGATAGCCAATGCATT
GGGTTCTTCAAGGGAAGTTCGCCCACGGCCACCGCTTTCACGAGACGGTA
CCCAAAATCGTGCAATGTTTTCTTCGGACATTCCGGAGCGCCATCCCACC
CTGCCTCCACCCGGCCTGCCCCCCCTTCTCCCCGAACCACAGGCGGCCTT
ACGAAGGAAGGTAGGTATACACCACAATAGGCGTAAGTTGGCGTGCCCCG
CCTTAAAAAAGACATGATGTTTTGTGGTTCACTGTTCTTGCCGTTGCACG
GACCGAAACAACAAACCCAGGGGCATCCCTAGCCTGGAGTTGCTGGATGG
GAAGTCGGTCACGCACAGAGAGGTTTCCCTGCACAACGCCTGCCGCACGT
GAGAACATTCCTGGATGTTTATTGAGATCGCTTCATGAGCATAGGCACAC
GAAAGACAATTTTGACCAATGCACAGAAACACGAGCTGTGCCGTTGTCGT
TTGTAGTCTTTTATTGAACTTCGTTTTGACCATCAAAAGGCAACACGGGC
AGCAGTAACTCTGCTGGTCGGTGCCAGTGCTCGGGCTTGCCTCGCGACGT
TTAATCAAGCGATTGAATCTTCGGATTGCAGCAAGATTATTCTCGTAGCG
CGAGCAAAGTCCTGTCATGCGGTGTCGAAATCGTCTGCCGCAGCCAACGT
ACACGAGCCCGTTAGAGACACTACTAACATGTATTGTGTATTCTGTAAAC
AAGAGAGCGATTTCTTTGAATCCCCCGAAGCATGCCATTCTTCGGCTGGA
AATCCGTTCAAAACTTGGTGAGGTGGACATGCCTTGTTGAGGCCGGTTGG
GTCGCCGCCGATCCCCACCTCCGTTCTCTGACCCCGTCCCGTTCCACCTC
GACACGCCAACGCTGGCGGTACGCGCGCAGTCTAACGTTGGACATGCTGC
GGCGTAACGGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10997:491..2203-

>mRNA_E-fasciculatus_F_contig10997.792.1 ID=mRNA_E-fasciculatus_F_contig10997.792.1|Name=mRNA_E-fasciculatus_F_contig10997.792.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=570bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10997:491..2203- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGGCCACGGCGGAGATCTCTCTACCTTCCTTGACGAGGTTGGATCTGAA
CAACAACATCTTGCACAATTTGGATGACCTGAAGCCGGCCACGGCGGAGA
TCTCTCTACCTTCCTTGACGAGGTTGGATCTGAACAACAACATCTTGCAC
AATTTGGATGACCTGAAGGCTTTGTGGAACATCGCCCCGTCGTTGACCGT
CCTTGACATGCGGGGGAACCCGCTCAGGGCGGCGAGGACGTACCGAGGCG
CGGCTATCAGGCTTTGTGGAACATCGCCCCGTCGTTGACCGTCCTTGACA
TGCGGGGGAACCCGCTCAGGGCGGCGAGGACGTACCGAGGCGCGGCTATC
AGGGGCATCCCTAGCCTGGAGTTGCTGGATGGGAAGTCGGTCACGCACAG
AGAGGTTTCCCTGCACAACGCCTGCCGCACGGGCATCCCTAGCCTGGAGT
TGCTGGATGGGAAGTCGGTCACGCACAGAGAGGTTTCCCTGCACAACGCC
TGCCGCACTCTAACGTTGGACATGCTGCGGCGTAACGGGTCTAACGTTGG
ACATGCTGCGGCGTAACGGG
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