mRNA_E-fasciculatus_F_contig1098.785.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1098.785.1
Unique NamemRNA_E-fasciculatus_F_contig1098.785.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1098.785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1098contigE-fasciculatus_F_contig1098:17657..18445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size789
Cds size642
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927599.208217-UTR-E-fasciculatus_F_contig1098:17656..178031622927599.208217-UTR-E-fasciculatus_F_contig1098:17656..17803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1098 17657..17803 +
1695995613.6388602-UTR-E-fasciculatus_F_contig1098:17656..178031695995613.6388602-UTR-E-fasciculatus_F_contig1098:17656..17803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1098 17657..17803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927599.2220626-CDS-E-fasciculatus_F_contig1098:17803..184451622927599.2220626-CDS-E-fasciculatus_F_contig1098:17803..18445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1098 17804..18445 +
1695995613.6480477-CDS-E-fasciculatus_F_contig1098:17803..184451695995613.6480477-CDS-E-fasciculatus_F_contig1098:17803..18445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1098 17804..18445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1098.785.1prot_E-fasciculatus_F_contig1098.785.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1098 17804..18445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1098.785.1

>prot_E-fasciculatus_F_contig1098.785.1 ID=prot_E-fasciculatus_F_contig1098.785.1|Name=mRNA_E-fasciculatus_F_contig1098.785.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=214bp
MLMERMCRRTAPSPMSLFPYNITNPDSFGRGHVFPTNLRHRGPRNSATPG
AHIGLGPVVMTWTTLSTVGHECSHVFVWLVLELASCLPGIGLPCQCVTDR
PTPPLEQPNYFFFTCTHLHELPGGGSRKWGWKFYHRSSHTVFESGLLYAA
SWQSAACWGTAVPVYAGPTFHCHDSGGHCKLESSRGVQTTHMGPATPASR
KDPVCSASSIVTLN
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mRNA from alignment at E-fasciculatus_F_contig1098:17657..18445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1098.785.1 ID=mRNA_E-fasciculatus_F_contig1098.785.1|Name=mRNA_E-fasciculatus_F_contig1098.785.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=789bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1098:17657..18445+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCAAGACGACTATGGGGTTGACTCTGGCCTTCCAGGAAGAACGCCCCCG
AAAGGTTTCGGCACAGATCCTTGCAGCTTGGCGGGGGCACATGTCGAAGG
CATGGTAGAAAGGCCTAACAGTAGTCACTTTCTACCTACTATCCATTATG
TTGATGGAAAGGATGTGCAGGCGCACTGCGCCCTCGCCCATGTCTCTCTT
TCCATACAATATAACGAACCCTGACTCGTTTGGGCGGGGACACGTCTTTC
CTACCAACCTTCGGCACAGAGGCCCCCGTAACTCTGCTACGCCCGGTGCA
CACATCGGCCTGGGACCCGTTGTCATGACTTGGACAACACTTTCAACTGT
TGGGCATGAGTGCTCGCATGTGTTCGTGTGGCTAGTGCTTGAACTGGCCT
CCTGCCTCCCGGGTATCGGCCTTCCCTGTCAATGCGTAACGGACAGACCC
ACACCTCCCCTAGAACAACCCAACTATTTCTTCTTTACGTGCACACACCT
ACATGAACTGCCAGGGGGGGGCTCGAGGAAATGGGGGTGGAAGTTTTACC
ATAGGTCATCTCATACAGTGTTCGAGAGCGGACTGTTGTATGCTGCGTCA
TGGCAGTCTGCTGCCTGCTGGGGGACAGCAGTACCGGTGTATGCGGGGCC
AACTTTCCACTGCCACGACAGCGGGGGCCACTGCAAACTCGAGTCAAGTC
GTGGTGTACAGACTACACATATGGGGCCGGCAACCCCCGCATCTAGGAAA
GACCCGGTATGCTCAGCTTCAAGTATAGTTACTCTCAAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1098:17657..18445+

>mRNA_E-fasciculatus_F_contig1098.785.1 ID=mRNA_E-fasciculatus_F_contig1098.785.1|Name=mRNA_E-fasciculatus_F_contig1098.785.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1284bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1098:17657..18445+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGATGGAAAGGATGTGCAGGCGCACTGCGCCCTCGCCCATGTCTCT
CTTTCCATACAATATAACGAACCCTGACTCGTTTGGGCGGGGACACGTCT
TTCCTACCAACCTTCGGCACAGAGGCCCCCGTAACTCTGCTACGCCCGGT
GCACACATCGGCCTGGGACCCGTTGTCATGACTTGGACAACACTTTCAAC
TGTTGGGCATGAGTGCTCGCATGTGTTCGTGTGGCTAGTGCTTGAACTGG
CCTCCTGCCTCCCGGGTATCGGCCTTCCCTGTCAATGCGTAACGGACAGA
CCCACACCTCCCCTAGAACAACCCAACTATTTCTTCTTTACGTGCACACA
CCTACATGAACTGCCAGGGGGGGGCTCGAGGAAATGGGGGTGGAAGTTTT
ACCATAGGTCATCTCATACAGTGTTCGAGAGCGGACTGTTGTATGCTGCG
TCATGGCAGTCTGCTGCCTGCTGGGGGACAGCAGTACCGGTGTATGCGGG
GCCAACTTTCCACTGCCACGACAGCGGGGGCCACTGCAAACTCGAGTCAA
GTCGTGGTGTACAGACTACACATATGGGGCCGGCAACCCCCGCATCTAGG
AAAGACCCGGTATGCTCAGCTTCAAGTATAGTTACTCTCAATATGTTGAT
GGAAAGGATGTGCAGGCGCACTGCGCCCTCGCCCATGTCTCTCTTTCCAT
ACAATATAACGAACCCTGACTCGTTTGGGCGGGGACACGTCTTTCCTACC
AACCTTCGGCACAGAGGCCCCCGTAACTCTGCTACGCCCGGTGCACACAT
CGGCCTGGGACCCGTTGTCATGACTTGGACAACACTTTCAACTGTTGGGC
ATGAGTGCTCGCATGTGTTCGTGTGGCTAGTGCTTGAACTGGCCTCCTGC
CTCCCGGGTATCGGCCTTCCCTGTCAATGCGTAACGGACAGACCCACACC
TCCCCTAGAACAACCCAACTATTTCTTCTTTACGTGCACACACCTACATG
AACTGCCAGGGGGGGGCTCGAGGAAATGGGGGTGGAAGTTTTACCATAGG
TCATCTCATACAGTGTTCGAGAGCGGACTGTTGTATGCTGCGTCATGGCA
GTCTGCTGCCTGCTGGGGGACAGCAGTACCGGTGTATGCGGGGCCAACTT
TCCACTGCCACGACAGCGGGGGCCACTGCAAACTCGAGTCAAGTCGTGGT
GTACAGACTACACATATGGGGCCGGCAACCCCCGCATCTAGGAAAGACCC
GGTATGCTCAGCTTCAAGTATAGTTACTCTCAAT
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