mRNA_E-fasciculatus_F_contig10971.781.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10971.781.1 vs. uniprot
Match: A0A6H5LCE7_9PHAE (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE7_9PHAE) HSP 1 Score: 221 bits (563), Expect = 6.470e-68 Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 1
Query: 4 QVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGAKERLMLLVDSEHKDVQRHALQCVSKIMVNKWEFIR 330
+VMSG LKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGAKERLMLLVDSEHKD+QRHALQCVSKIMVNKWEFIR
Sbjct: 413 EVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGAKERLMLLVDSEHKDIQRHALQCVSKIMVNKWEFIR 521
BLAST of mRNA_E-fasciculatus_F_contig10971.781.1 vs. uniprot
Match: D7FH73_ECTSI (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH73_ECTSI) HSP 1 Score: 155 bits (391), Expect = 4.070e-47 Identity = 72/76 (94.74%), Postives = 76/76 (100.00%), Query Frame = 1
Query: 1 LQVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGAK 228
++VMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG++
Sbjct: 1 MKVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGSR 76
BLAST of mRNA_E-fasciculatus_F_contig10971.781.1 vs. uniprot
Match: F0XWY7_AURAN (V-ATPase_H_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWY7_AURAN) HSP 1 Score: 150 bits (379), Expect = 5.560e-45 Identity = 68/107 (63.55%), Postives = 87/107 (81.31%), Query Frame = 1
Query: 4 QVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSE-DKSVVSIACYDLGEFVRFYPSGKTIVKHLGAKERLMLLVDSEHKDVQRHALQCVSKIMVNKWE 321
+V SG L WG VHT+KFWRE AR EAD+F ++K L++LL + D +VVSIACYD+GEFVRFYP+GK +VKHLGAK+++M L+D E ++QRHALQCVSKI+V WE
Sbjct: 9 EVRSGDLAWGLVHTDKFWRENARAAEADDFALIKLLVQLLDGDRDPTVVSIACYDVGEFVRFYPNGKAVVKHLGAKDKIMALIDHEDPEIQRHALQCVSKILVTNWE 115
BLAST of mRNA_E-fasciculatus_F_contig10971.781.1 vs. uniprot
Match: A0A835Z9Q6_9STRA (V-type H+-transporting ATPase 54 kd subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q6_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.230e-44 Identity = 72/109 (66.06%), Postives = 92/109 (84.40%), Query Frame = 1
Query: 4 QVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGAKERLMLLVDSEHKDVQRHALQCVSKIMVNKWEFIR 330
+V SG L+WG VHTE+FWRE AR EAD+F +++ LI LL+SED++VV+IACYDLGEFVRFYP+GK I+KHLGAK +M LV+ + +V+R ALQCVSK+MVNKWEF+R
Sbjct: 350 EVRSGRLRWGVVHTERFWRENARATEADDFALIRALIGLLRSEDETVVAIACYDLGEFVRFYPTGKAILKHLGAKPTVMALVEHANPEVRRQALQCVSKLMVNKWEFVR 458
BLAST of mRNA_E-fasciculatus_F_contig10971.781.1 vs. uniprot
Match: A0A7S2H8Z8_9STRA (V-type proton ATPase subunit H n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H8Z8_9STRA) HSP 1 Score: 155 bits (393), Expect = 2.250e-43 Identity = 74/110 (67.27%), Postives = 92/110 (83.64%), Query Frame = 1
Query: 4 QVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGAKERLMLLV-DSEHKDVQRHALQCVSKIMVNKWEFIR 330
+V S LKWG VH EKFWRE A++ E +EF +LK+LIELL+S+D VVS+ACYDLGEFVRFYP+GK+IVK+LGAK+ +M + D E +VQRHALQC+SKIMVNKWEF+R
Sbjct: 341 EVKSKQLKWGLVHQEKFWRENAKELEVNEFALLKELIELLRSDDPEVVSVACYDLGEFVRFYPNGKSIVKNLGAKDLVMGKIGDKEPPEVQRHALQCMSKIMVNKWEFMR 450
BLAST of mRNA_E-fasciculatus_F_contig10971.781.1 vs. uniprot
Match: A0A7S2SKW2_9STRA (V-type proton ATPase subunit H n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKW2_9STRA) HSP 1 Score: 153 bits (387), Expect = 1.510e-42 Identity = 74/110 (67.27%), Postives = 90/110 (81.82%), Query Frame = 1
Query: 4 QVMSGHLKWGP-VHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGAKERLMLLVDSEHKDVQRHALQCVSKIMVNKWEFIR 330
+VMS LKWG VH EKFWRE AR E ++F +LK LI LLKSED VVS+ACYDLGEFVRFYP+G++IVK+LGAK+ +ML ++ E +VQRHALQC+SKIMVN WEF+R
Sbjct: 334 EVMSRRLKWGSLVHEEKFWRENARCLEDNDFELLKALIGLLKSEDNEVVSVACYDLGEFVRFYPNGRSIVKNLGAKDLVMLKINDEEPEVQRHALQCMSKIMVNHWEFMR 443
BLAST of mRNA_E-fasciculatus_F_contig10971.781.1 vs. uniprot
Match: A0A1E7FC18_9STRA (ARM repeat-containing protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FC18_9STRA) HSP 1 Score: 145 bits (367), Expect = 3.690e-39 Identity = 66/111 (59.46%), Postives = 89/111 (80.18%), Query Frame = 1
Query: 4 QVMSGHLKWGPVHTEKFWREQARKFEADE--FFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGAKERLMLLVDSEHKDVQRHALQCVSKIMVNKWEFIR 330
+V GHL+WG HTE F++E A+ FE + FF+LK LI LL S+D+ VV+IACYD+GEFVRFYP+G++I K LGAKE +M L++S++ D+QRHALQCVSKIMV WE+++
Sbjct: 404 EVEKGHLQWGSTHTEAFFKENAKMFEGSDGDFFLLKVLITLLSSKDEEVVAIACYDIGEFVRFYPNGRSITKRLGAKELVMPLIESDNVDLQRHALQCVSKIMVQNWEYVK 514
BLAST of mRNA_E-fasciculatus_F_contig10971.781.1 vs. uniprot
Match: B7G9S7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9S7_PHATC) HSP 1 Score: 135 bits (340), Expect = 5.610e-39 Identity = 61/111 (54.95%), Postives = 84/111 (75.68%), Query Frame = 1
Query: 4 QVMSGHLKWGPVHTEKFWREQARKFEADE--FFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGAKERLMLLVDSEHKDVQRHALQCVSKIMVNKWEFIR 330
+V SGHL+WG HTE F++E AR E + F +LK LI LL + D+ V ++ACYD+GEFVR YP+G+ I K LGAK+ +M L++ E+ ++QRHALQCVSKIMVN WE+++
Sbjct: 10 EVESGHLQWGSTHTEAFFKENARMIEGSDGDFHLLKVLIALLSNHDEEVAAVACYDIGEFVRHYPNGRAIAKRLGAKDVVMPLIEHENVELQRHALQCVSKIMVNNWEYVK 120
BLAST of mRNA_E-fasciculatus_F_contig10971.781.1 vs. uniprot
Match: A0A7S0ATY0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ATY0_9STRA) HSP 1 Score: 136 bits (343), Expect = 6.750e-39 Identity = 64/111 (57.66%), Postives = 85/111 (76.58%), Query Frame = 1
Query: 4 QVMSGHLKWGPVHTEKFWREQARKFEADE--FFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGAKERLMLLVDSEHKDVQRHALQCVSKIMVNKWEFIR 330
+V SGHL+WG HTE F++E AR E + F +LK LI LL S+D+ V SIAC+D+GEFVR+YP+G+ I K LGAKE +M L++ ++ D+QRHALQCVSKIMV WEF++
Sbjct: 49 EVESGHLQWGTCHTEAFFKENARMVEGTDGDFRLLKVLIALLSSKDEEVASIACHDIGEFVRYYPNGRAIAKRLGAKELVMPLIEHDNVDLQRHALQCVSKIMVQHWEFVK 159
BLAST of mRNA_E-fasciculatus_F_contig10971.781.1 vs. uniprot
Match: I2CP76_NANGC (V-type proton ATPase subunit H n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP76_NANGC) HSP 1 Score: 141 bits (356), Expect = 5.360e-38 Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 1
Query: 4 QVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGAKERLMLLVDSEHKDVQRHALQCVSKIMVNKWEFIR 330
+V SG L+WG VH+EKFW+E R EAD+F +LK LI LL SED+ VV+IACYD+GEF RFYP+G++IVK GAK++ M L++ +V R+ALQCVSKIMV W IR
Sbjct: 335 EVASGQLRWGIVHSEKFWKENVRSLEADDFKVLKSLISLLASEDEEVVAIACYDIGEFARFYPNGRSIVKLFGAKDKAMHLIEHPSPEVSRYALQCVSKIMVVNWAHIR 443 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10971.781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10971.781.1 >prot_E-fasciculatus_F_contig10971.781.1 ID=prot_E-fasciculatus_F_contig10971.781.1|Name=mRNA_E-fasciculatus_F_contig10971.781.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp MSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACback to top mRNA from alignment at E-fasciculatus_F_contig10971:1091..2422- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10971.781.1 ID=mRNA_E-fasciculatus_F_contig10971.781.1|Name=mRNA_E-fasciculatus_F_contig10971.781.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1332bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10971:1091..2422- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10971:1091..2422- >mRNA_E-fasciculatus_F_contig10971.781.1 ID=mRNA_E-fasciculatus_F_contig10971.781.1|Name=mRNA_E-fasciculatus_F_contig10971.781.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10971:1091..2422- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |