mRNA_E-fasciculatus_F_contig1094.756.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1094.756.1
Unique NamemRNA_E-fasciculatus_F_contig1094.756.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1094.756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1094contigE-fasciculatus_F_contig1094:1045..2443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.5692706-CDS-E-fasciculatus_F_contig1094:1044..11651622927594.5692706-CDS-E-fasciculatus_F_contig1094:1044..1165Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1094 1045..1165 +
1695995611.9386754-CDS-E-fasciculatus_F_contig1094:1044..11651695995611.9386754-CDS-E-fasciculatus_F_contig1094:1044..1165Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1094 1045..1165 +
1622927594.5804615-CDS-E-fasciculatus_F_contig1094:2266..24421622927594.5804615-CDS-E-fasciculatus_F_contig1094:2266..2442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1094 2267..2442 +
1695995611.946666-CDS-E-fasciculatus_F_contig1094:2266..24421695995611.946666-CDS-E-fasciculatus_F_contig1094:2266..2442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1094 2267..2442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1094.756.1prot_E-fasciculatus_F_contig1094.756.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1094 1045..2442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1094.756.1

>prot_E-fasciculatus_F_contig1094.756.1 ID=prot_E-fasciculatus_F_contig1094.756.1|Name=mRNA_E-fasciculatus_F_contig1094.756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=99bp
RYTKRFQLTTRHHRATSSSSLASASEDRVFAWVISPLGCKETKNATKPWT
TLGTTRPWGCEHHARDHPRSTWSEELPPSTTTATTAAVLEARSSCSNFR
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mRNA from alignment at E-fasciculatus_F_contig1094:1045..2443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1094.756.1 ID=mRNA_E-fasciculatus_F_contig1094.756.1|Name=mRNA_E-fasciculatus_F_contig1094.756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1399bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1094:1045..2443+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGATACACCAAGCGATTTCAGCTCACAACACGACATCATCGCGCGACAAG
CTCGAGCTCTCTGGCGTCCGCTAGTGAAGATAGAGTCTTCGCTTGGGTTA
TCAGCCCCCTCGGGTGTAAAGGCAAGTACCAGGGACGCGAGAGGTGTCCA
CGCCATGCACGTGTACATGTATGTGAGAGAGTAGCAGGATCGTTGGCAGG
CCGTCCGATCCTGGTTTTTCAACGTGTTGCAGATCTCAGAGGTAGCAGCA
GACCTGTGGGAGTCATACTTTTCTTTAGTGCTCGCGCTTCTTGTAGCACT
GCGTCAGGCGTGCGTCGTAAATGCGTCGCCCGAGAGCCGTGGCTGATGTA
CTGATGTTCTGTAGGATCCACAGGCGGCGGTACATCCATGTATGGCACCC
GCTCTTCCGCTTCACCACTCGAAGAAACCTATACTCTCTCGTAGCCTACA
CGCACGCGCGGGGCCCGGGGGATTCTCCCTGATCCCTCCGAATGGCACGG
GTACGGCGGTGTGAGTTGTTGTTCTAGGGCCCAGGTTGATGCGGTTAAGG
CATGGGCTGTCAACAGGAAGTGTACTCTTTTCTCTTCTTTTATTTCTCGG
GACATCTCTTTCGGCTGCAAACACACCAAAGTCTTGCTCCCTCGAACACC
CCTCAAGTCTTCGTCCGCACGGGAGTACCGCGATCGCAATGGTGACTCAT
GCGTTCTGATTGTTTTGGTAGATGTCCCGAACGGCGAACTTGATAGGCAA
TCGCTGTCGCGGTGTGAAATATTTGTGGGCAGGATTTGCAGTCTGATCAT
CTGCTGTTCTTTGCTGCATGTTCGTGCGTACTCCAGCCTACTGTAGATGT
AGGTGAAAGCCTGTGCTCGGCGTATTTTCGCTTATTGCGTACTCTATGTA
TAATTTTGCTACTCCATCGTTCCGCGCACTTACCATGTTGGTTGATTTGA
TACGTTTGGGCAGGGTTGTTGTAGTCAAATTTCACCTATCGTAGCCTACA
CGTATCTACTGCTGGGAATTTTCAACTCGTCCACGTTTCCTACCGGTAGA
CGTATCCCCGCGCTCGACATTGTCCGCTTCTGCTTACCCCCGTTGGTGCT
AGAGGCCGCGAGGAACACTCTCGCTGTGTCTTGTCCTGGCTTAAGCGCAG
TTACAGGTATATTACAACCGCGCAGGTACGCTTGACTTGATATTGTTTGT
AATCTGGCCCCGTTGGAACCAGAGACCAAGAACGCGACGAAGCCATGGAC
AACGCTGGGGACAACCAGGCCCTGGGGCTGCGAACACCACGCGCGCGACC
ACCCTCGTTCGACGTGGTCCGAAGAACTGCCACCATCAACAACAACAGCA
ACAACGGCAGCAGTGCTAGAGGCACGCTCGTCCTGCTCCAACTTCAGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1094:1045..2443+

>mRNA_E-fasciculatus_F_contig1094.756.1 ID=mRNA_E-fasciculatus_F_contig1094.756.1|Name=mRNA_E-fasciculatus_F_contig1094.756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=594bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1094:1045..2443+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGATACACCAAGCGATTTCAGCTCACAACACGACATCATCGCGCGACAAG
CTCGAGCTCTCTGGCGTCCGCTAGTGAAGATAGAGTCTTCGCTTGGGTTA
TCAGCCCCCTCGGGTGTAAAGCGATACACCAAGCGATTTCAGCTCACAAC
ACGACATCATCGCGCGACAAGCTCGAGCTCTCTGGCGTCCGCTAGTGAAG
ATAGAGTCTTCGCTTGGGTTATCAGCCCCCTCGGGTGTAAAGAGACCAAG
AACGCGACGAAGCCATGGACAACGCTGGGGACAACCAGGCCCTGGGGCTG
CGAACACCACGCGCGCGACCACCCTCGTTCGACGTGGTCCGAAGAACTGC
CACCATCAACAACAACAGCAACAACGGCAGCAGTGCTAGAGGCACGCTCG
TCCTGCTCCAACTTCAGAAGACCAAGAACGCGACGAAGCCATGGACAACG
CTGGGGACAACCAGGCCCTGGGGCTGCGAACACCACGCGCGCGACCACCC
TCGTTCGACGTGGTCCGAAGAACTGCCACCATCAACAACAACAGCAACAA
CGGCAGCAGTGCTAGAGGCACGCTCGTCCTGCTCCAACTTCAGA
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