mRNA_E-fasciculatus_F_contig10939.755.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10939.755.1
Unique NamemRNA_E-fasciculatus_F_contig10939.755.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10939.755.1 vs. uniprot
Match: A0A6H5J509_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J509_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.820e-43
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 1
Query:   19 ESSTVQAFGLLGALSPIIWFACFTAIVIVTNLLLCGGYPPQGRIPLGTRAYLSWWYMNTMLNVWESIGEPWLLDTKLIILVYRCMGAKV 285
            ESS ++A GLLGALSPIIWFACFTAIVIVT LLL GGYP Q R+PLGTRAYLSWWYMNTMLN+WESIG  WLLDTKLII +YRCMGAK+
Sbjct:  106 ESSKMRALGLLGALSPIIWFACFTAIVIVTKLLLFGGYP-QVRVPLGTRAYLSWWYMNTMLNLWESIGGTWLLDTKLIIFIYRCMGAKI 193          
BLAST of mRNA_E-fasciculatus_F_contig10939.755.1 vs. uniprot
Match: D7FRT1_ECTSI (Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT1_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.130e-41
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1
Query:   22 SSTVQAFGLLGALSPIIWFACFTAIVIVTNLLLCGGYPPQGRIPLGTRAYLSWWYMNTMLNVWESIGEPWLLDTKLIILVYRCMGAKV 285
            SS ++  GLLGALSPIIWFACFTAIVIVT LLL GGYP Q R+PLGTRAYLSWWYMNTMLNVWES+G  WLLDTKLII +YRCMGA++
Sbjct: 1338 SSKMRVLGLLGALSPIIWFACFTAIVIVTKLLLIGGYP-QVRVPLGTRAYLSWWYMNTMLNVWESVGGTWLLDTKLIIFIYRCMGAQI 1424          
BLAST of mRNA_E-fasciculatus_F_contig10939.755.1 vs. uniprot
Match: D7FH92_ECTSI (Putative peptide synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH92_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 7.490e-39
Identity = 67/89 (75.28%), Postives = 75/89 (84.27%), Query Frame = 1
Query:   19 ESSTVQAFGLLGALSPIIWFACFTAIVIVTNLLLCGGYPPQGRIPLGTRAYLSWWYMNTMLNVWESIGEPWLLDTKLIILVYRCMGAKV 285
             SS V+A GLLGALSP+IWFACFTAIVIVT +LL  G  PQ R+PLGTRAYLSWWYMN MLNVWE +G  WLLDTK+II +YRCMGAK+
Sbjct:  307 SSSKVRALGLLGALSPMIWFACFTAIVIVTKILL--GAHPQERVPLGTRAYLSWWYMNAMLNVWECVGGTWLLDTKMIIFIYRCMGAKI 393          
BLAST of mRNA_E-fasciculatus_F_contig10939.755.1 vs. uniprot
Match: D7G4W3_ECTSI (Acyl CoA Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W3_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 6.730e-38
Identity = 66/89 (74.16%), Postives = 74/89 (83.15%), Query Frame = 1
Query:   19 ESSTVQAFGLLGALSPIIWFACFTAIVIVTNLLLCGGYPPQGRIPLGTRAYLSWWYMNTMLNVWESIGEPWLLDTKLIILVYRCMGAKV 285
            ESS VQA GLLG LSPIIWF CFTAI++VT LLL  G  P+ R+PLGTRAYLSWWYMNTMLNVWE +G  WLLDTKL+I +YR MGAK+
Sbjct:  747 ESSKVQALGLLGVLSPIIWFTCFTAIIVVTKLLL--GAHPEERVPLGTRAYLSWWYMNTMLNVWECVGGAWLLDTKLMIFIYRRMGAKI 833          
BLAST of mRNA_E-fasciculatus_F_contig10939.755.1 vs. uniprot
Match: A0A6H5JSY1_9PHAE (Carrier domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSY1_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 3.180e-37
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 1
Query:   13 PTESSTVQAFGLLGALSPIIWFACFTAIVIVTNLLLCGGYPPQGRIPLGTRAYLSWWYMNTMLNVWESIGEPWLLDTKLIILVYRCMGAKV 285
            P  SS V+A GLLGALSPIIWF CFTAIVIVT ++L  G  PQ R+PLGTRAYLSWWYMN MLNVWE +G   LLDTK+II +YRCMGAK+
Sbjct:  752 PGSSSKVRALGLLGALSPIIWFTCFTAIVIVTKIVL--GAHPQERVPLGTRAYLSWWYMNAMLNVWECVGGTCLLDTKMIIFIYRCMGAKI 840          
BLAST of mRNA_E-fasciculatus_F_contig10939.755.1 vs. uniprot
Match: A0A6H5L033_9PHAE (Carrier domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L033_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 8.820e-28
Identity = 57/89 (64.04%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   19 ESSTVQAFGLLGALSPIIWFACFTAIVIVTNLLLCGGYPPQGRIPLGTRAYLSWWYMNTMLNVWESIGEPWLLDTKLIILVYRCMGAKV 285
            +  TV+  GLL AL+PIIWFA FT +VIV   L+ G    QG IPLGT  YLSWWY NTML+VWE+ G  WLLDTKL IL YR MGAKV
Sbjct:  558 DDGTVRTPGLLVALAPIIWFASFTVMVIVAKWLVLGRQA-QGCIPLGTHVYLSWWYTNTMLSVWETTGGRWLLDTKLAILFYRMMGAKV 645          
BLAST of mRNA_E-fasciculatus_F_contig10939.755.1 vs. uniprot
Match: A0A6H5JSS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSS7_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.330e-13
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  124 GGYPPQGRI----PLGTRAYLSWWYMNTMLNVWESIGEPWLLDTKLIILVYRCMGAKV 285
            GGY  +  +    P   RAYLSW YMNTMLNVWE +G  WLLDTKL+I +YR MGAK+
Sbjct:   45 GGYNKEPWLDSASPSCLRAYLSWCYMNTMLNVWECVGGAWLLDTKLMIFIYRRMGAKI 102          
BLAST of mRNA_E-fasciculatus_F_contig10939.755.1 vs. uniprot
Match: A0A7S1YEF2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YEF2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 7.120e-6
Identity = 20/63 (31.75%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   97 VIVTNLLLCGGYPPQGRIPLGTRAYLSWWYMNTMLNVWESIGEPWLLDTKLIILVYRCMGAKV 285
            V++   L+ G Y    +  +G+ +Y+ WW+++ ++++WE     ++LDT L+ L YR +GAK+
Sbjct:  646 VVIAKWLVVGRYRADEQTFVGSISYVRWWFIDRLVHLWEQWVGVFILDTPLLWLFYRMLGAKI 708          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10939.755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5J509_9PHAE2.820e-4383.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRT1_ECTSI1.130e-4180.68Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus ... [more]
D7FH92_ECTSI7.490e-3975.28Putative peptide synthetase n=1 Tax=Ectocarpus sil... [more]
D7G4W3_ECTSI6.730e-3874.16Acyl CoA Synthase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JSY1_9PHAE3.180e-3772.53Carrier domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L033_9PHAE8.820e-2864.04Carrier domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JSS7_9PHAE1.330e-1360.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1YEF2_9STRA7.120e-631.75Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10939contigE-fasciculatus_F_contig10939:3569..3855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue7.5e-35
Seed eggNOG ortholog2880.D7FRT1
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0318@1,KOG3628@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size289
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.5371468-CDS-E-fasciculatus_F_contig10939:3568..38531622927594.5371468-CDS-E-fasciculatus_F_contig10939:3568..3853Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10939 3569..3853 +
1695995611.9286237-CDS-E-fasciculatus_F_contig10939:3568..38531695995611.9286237-CDS-E-fasciculatus_F_contig10939:3568..3853Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10939 3569..3853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10939.755.1prot_E-fasciculatus_F_contig10939.755.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10939 3569..3853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10939.755.1

>prot_E-fasciculatus_F_contig10939.755.1 ID=prot_E-fasciculatus_F_contig10939.755.1|Name=mRNA_E-fasciculatus_F_contig10939.755.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=95bp
CPCHPTESSTVQAFGLLGALSPIIWFACFTAIVIVTNLLLCGGYPPQGRI
PLGTRAYLSWWYMNTMLNVWESIGEPWLLDTKLIILVYRCMGAKV
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mRNA from alignment at E-fasciculatus_F_contig10939:3569..3855+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10939.755.1 ID=mRNA_E-fasciculatus_F_contig10939.755.1|Name=mRNA_E-fasciculatus_F_contig10939.755.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=287bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10939:3569..3855+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTCCTTGCCACCCGACAGAGTCTTCCACCGTGCAGGCTTTCGGGCTTCT CGGAGCGCTTTCACCAATCATATGGTTCGCGTGTTTTACGGCGATCGTCA TCGTGACAAACCTACTGCTGTGTGGCGGGTACCCCCCTCAAGGGCGTATC CCGCTGGGCACGCGGGCGTACCTCTCCTGGTGGTACATGAACACCATGCT GAACGTGTGGGAGTCCATTGGTGAGCCGTGGTTGCTCGATACGAAGCTGA TCATCCTCGTTTACCGGTGCATGGGCGCAAAGGTGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10939:3569..3855+

>mRNA_E-fasciculatus_F_contig10939.755.1 ID=mRNA_E-fasciculatus_F_contig10939.755.1|Name=mRNA_E-fasciculatus_F_contig10939.755.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=570bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10939:3569..3855+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTCCTTGCCACCCGACAGAGTCTTCCACCGTGCAGGCTTTCGGGCTTCT
CGGAGCGCTTTCACCAATCATATGGTTCGCGTGTTTTACGGCGATCGTCA
TCGTGACAAACCTACTGCTGTGTGGCGGGTACCCCCCTCAAGGGCGTATC
CCGCTGGGCACGCGGGCGTACCTCTCCTGGTGGTACATGAACACCATGCT
GAACGTGTGGGAGTCCATTGGTGAGCCGTGGTTGCTCGATACGAAGCTGA
TCATCCTCGTTTACCGGTGCATGGGCGCAAAGGTGTGTCCTTGCCACCCG
ACAGAGTCTTCCACCGTGCAGGCTTTCGGGCTTCTCGGAGCGCTTTCACC
AATCATATGGTTCGCGTGTTTTACGGCGATCGTCATCGTGACAAACCTAC
TGCTGTGTGGCGGGTACCCCCCTCAAGGGCGTATCCCGCTGGGCACGCGG
GCGTACCTCTCCTGGTGGTACATGAACACCATGCTGAACGTGTGGGAGTC
CATTGGTGAGCCGTGGTTGCTCGATACGAAGCTGATCATCCTCGTTTACC
GGTGCATGGGCGCAAAGGTG
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