mRNA_E-fasciculatus_F_contig10939.754.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10939.754.1
Unique NamemRNA_E-fasciculatus_F_contig10939.754.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10939.754.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.230e-14
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:  176 PVYMTITRVPSARKAPGFDSNSKRINVRHHFLWQLVEQKEAEIIHAASSYHHADSLPKTLPEREFLFYQD 385
            P+Y          K P  +SNSK I+VRHHFL QLV++KE EIIH AS Y HAD L K LPEREF+F++D
Sbjct:  361 PLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPEREFVFHRD 430
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10939.754.1 vs. uniprot
Match: A0A6H5KIL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.340e-14
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:  176 PVYMTITRVPSARKAPGFDSNSKRINVRHHFLWQLVEQKEAEIIHAASSYHHADSLPKTLPEREFLFYQD 385
            P+Y          K P  +SNSK I+VRHHFL QLV++KE EIIH AS Y HAD L K LPEREF+F++D
Sbjct:  990 PLYEDNEGAIQIAKHPVSNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPEREFVFHRD 1059
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10939.754.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.160e-14
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:  176 PVYMTITRVPSARKAPGFDSNSKRINVRHHFLWQLVEQKEAEIIHAASSYHHADSLPKTLPEREFLFYQD 385
            P+Y          K P  +SNSK I+VRHHFL QLV++KE EIIH AS Y HADSL K LPERE +F++D
Sbjct:  542 PLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKALPEREVVFHRD 611
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10939.754.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.490e-14
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:  176 PVYMTITRVPSARKAPGFDSNSKRINVRHHFLWQLVEQKEAEIIHAASSYHHADSLPKTLPEREFLFYQD 385
            P+Y          K P  +SNSK I+VRHHFL QLV++KE EIIH AS Y HAD L K LPER+F+F++D
Sbjct:  309 PLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPERDFVFHRD 378
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10939.754.1 vs. uniprot
Match: A0A6H5KDS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS1_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.950e-14
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 2 
Query:  176 PVYMTITRVPSARKAPGFDSNSKRINVRHHFLWQLVEQKEAEIIHAASSYHHADSLPKTLPEREFLFYQD 385
            P+Y          K P  +SNSK I+V HHFL QLV++KE EI+H AS Y HAD L   LPER F+F++D
Sbjct:   28 PLYEDNEGAIQIAKHPILNSNSKHIDVLHHFLRQLVDEKEVEIVHVASQYQHADFLTNVLPERGFVFHRD 97
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10939.754.1 vs. uniprot
Match: A0A6H5JFL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.100e-14
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 2 
Query:  176 PVYMTITRVPSARKAPGFDSNSKRINVRHHFLWQLVEQKEAEIIHAASSYHHADSLPKTLPEREFLFYQD 385
            P+Y          K P  +SNSK I+ RHHFL QLV++KE EIIH AS Y HAD L K LPEREF+ ++D
Sbjct:   56 PLYEDNEGAIQIAKHPISNSNSKHIDARHHFLRQLVDEKEVEIIHVASKYQHADFLTKALPEREFVSHRD 125
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10939.754.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.240e-14
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:  176 PVYMTITRVPSARKAPGFDSNSKRINVRHHFLWQLVEQKEAEIIHAASSYHHADSLPKTLPEREFLFYQD 385
            P+Y          K P  +SNSK I+VRHHFL QLV++KE EIIH AS Y HAD L K LPER+F+F++D
Sbjct:  613 PLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPERDFVFHRD 682
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10939.754.1 vs. uniprot
Match: A0A6H5JKV2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.070e-14
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:  236 NSKRINVRHHFLWQLVEQKEAEIIHAASSYHHADSLPKTLPEREFLFYQD 385
            NSK I+VRHHFL QLV++KE EIIH AS Y HAD L K LPEREF+ ++D
Sbjct:   76 NSKHIDVRHHFLRQLVDEKEVEIIHVASKYQHADFLTKALPEREFVSHRD 125
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10939.754.1 vs. uniprot
Match: A0A6H5JYT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT9_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.510e-13
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  230 DSNSKRINVRHHFLWQLVEQKEAEIIHAASSYHHADSLPKTLPEREFLFYQD 385
            +SNSK I+VRHHFL QLV++KE EIIH AS Y HADSL K LPEREF+ ++D
Sbjct:  943 NSNSKHIDVRHHFLRQLVDEKEVEIIHVASKYQHADSLTKALPEREFVSHRD 994
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10939.754.1 vs. uniprot
Match: A0A6H5KFD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.530e-13
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 2 
Query:  176 PVYMTITRVPSARKAPGFDSNSKRINVRHHFLWQLVEQKEAEIIHAASSYHHADSLPKTLPEREFLFYQD 385
            P+Y          K P  +SNSK I+VRHHFL QLV++KE EIIH AS Y HAD L K LPEREF+ ++D
Sbjct:  382 PLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASKYQHADFLTKALPEREFVSHRD 451
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10939.754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRZ9_9PHAE1.230e-1457.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KIL0_9PHAE1.340e-1457.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K307_9PHAE2.160e-1457.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWK8_9PHAE2.490e-1455.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KDS1_9PHAE3.950e-1451.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFL1_9PHAE4.100e-1454.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR13_9PHAE4.240e-1455.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKV2_9PHAE8.070e-1468.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYT9_9PHAE1.510e-1369.23Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFD2_9PHAE1.530e-1355.71Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10939contigE-fasciculatus_F_contig10939:2..683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size682
Cds size498
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.4817703-UTR-E-fasciculatus_F_contig10939:1..1851622927594.4817703-UTR-E-fasciculatus_F_contig10939:1..185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10939 2..185 +
1695995611.9085183-UTR-E-fasciculatus_F_contig10939:1..1851695995611.9085183-UTR-E-fasciculatus_F_contig10939:1..185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10939 2..185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.493872-CDS-E-fasciculatus_F_contig10939:185..6831622927594.493872-CDS-E-fasciculatus_F_contig10939:185..683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10939 186..683 +
1695995611.9200423-CDS-E-fasciculatus_F_contig10939:185..6831695995611.9200423-CDS-E-fasciculatus_F_contig10939:185..683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10939 186..683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10939.754.1prot_E-fasciculatus_F_contig10939.754.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10939 186..683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10939.754.1

>prot_E-fasciculatus_F_contig10939.754.1 ID=prot_E-fasciculatus_F_contig10939.754.1|Name=mRNA_E-fasciculatus_F_contig10939.754.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=166bp
MTITRVPSARKAPGFDSNSKRINVRHHFLWQLVEQKEAEIIHAASSYHHA
DSLPKTLPEREFLFYQDCTCDGFEGNCFGWCVGGFFNLFFDKSEVYYYSH
RDDRNCAFVTATACEVSTASRTAVACTCAIRRRLCRYNHATRIRVVDSAT
RNAPRNTTPARFYLRF
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mRNA from alignment at E-fasciculatus_F_contig10939:2..683+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10939.754.1 ID=mRNA_E-fasciculatus_F_contig10939.754.1|Name=mRNA_E-fasciculatus_F_contig10939.754.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=682bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10939:2..683+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTAGCTTGGGACTAGCAACGCCGACGATATTCGTCGGCTTGCTTTCAACA
ATGTGTATATAGACTACCTTTTTTCTGGGGAAAAGGGAAAGATCTGATCG
ATTGGGGGAAGTGGATTCTGGTTTTGGGCGCATTCGGCGTTTTTCGTTGC
CGAAGAAGTTGCCGCGGTGCACCCCCCTGTCTACATGACGATCACGAGGG
TGCCATCAGCTCGCAAAGCACCCGGTTTCGACTCCAACTCAAAGCGCATC
AATGTGCGCCACCACTTTCTTTGGCAGCTCGTAGAGCAGAAGGAGGCAGA
GATCATCCACGCAGCGTCAAGTTACCATCATGCTGACTCCCTCCCGAAGA
CGCTGCCGGAAAGGGAGTTTCTGTTCTACCAGGACTGTACGTGTGATGGA
TTTGAAGGGAATTGTTTTGGGTGGTGTGTTGGGGGATTCTTCAACTTGTT
TTTTGATAAATCCGAAGTTTATTACTACTCTCATCGCGACGATCGAAATT
GCGCATTCGTCACAGCCACCGCTTGCGAAGTCTCTACAGCCAGTCGAACA
GCCGTCGCGTGCACATGCGCCATACGCCGACGGCTCTGCCGATACAACCA
CGCCACCCGCATACGCGTCGTCGACTCGGCCACACGCAATGCGCCACGTA
ACACCACACCCGCCAGGTTTTACTTACGTTTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10939:2..683+

>mRNA_E-fasciculatus_F_contig10939.754.1 ID=mRNA_E-fasciculatus_F_contig10939.754.1|Name=mRNA_E-fasciculatus_F_contig10939.754.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=996bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10939:2..683+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGATCACGAGGGTGCCATCAGCTCGCAAAGCACCCGGTTTCGACTC
CAACTCAAAGCGCATCAATGTGCGCCACCACTTTCTTTGGCAGCTCGTAG
AGCAGAAGGAGGCAGAGATCATCCACGCAGCGTCAAGTTACCATCATGCT
GACTCCCTCCCGAAGACGCTGCCGGAAAGGGAGTTTCTGTTCTACCAGGA
CTGTACGTGTGATGGATTTGAAGGGAATTGTTTTGGGTGGTGTGTTGGGG
GATTCTTCAACTTGTTTTTTGATAAATCCGAAGTTTATTACTACTCTCAT
CGCGACGATCGAAATTGCGCATTCGTCACAGCCACCGCTTGCGAAGTCTC
TACAGCCAGTCGAACAGCCGTCGCGTGCACATGCGCCATACGCCGACGGC
TCTGCCGATACAACCACGCCACCCGCATACGCGTCGTCGACTCGGCCACA
CGCAATGCGCCACGTAACACCACACCCGCCAGGTTTTACTTACGTTTCAT
GACGATCACGAGGGTGCCATCAGCTCGCAAAGCACCCGGTTTCGACTCCA
ACTCAAAGCGCATCAATGTGCGCCACCACTTTCTTTGGCAGCTCGTAGAG
CAGAAGGAGGCAGAGATCATCCACGCAGCGTCAAGTTACCATCATGCTGA
CTCCCTCCCGAAGACGCTGCCGGAAAGGGAGTTTCTGTTCTACCAGGACT
GTACGTGTGATGGATTTGAAGGGAATTGTTTTGGGTGGTGTGTTGGGGGA
TTCTTCAACTTGTTTTTTGATAAATCCGAAGTTTATTACTACTCTCATCG
CGACGATCGAAATTGCGCATTCGTCACAGCCACCGCTTGCGAAGTCTCTA
CAGCCAGTCGAACAGCCGTCGCGTGCACATGCGCCATACGCCGACGGCTC
TGCCGATACAACCACGCCACCCGCATACGCGTCGTCGACTCGGCCACACG
CAATGCGCCACGTAACACCACACCCGCCAGGTTTTACTTACGTTTC
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